Author results

1MCP
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PHOSPHOCHOLINE BINDING IMMUNOGLOBULIN FAB MC/PC603. AN X-RAY DIFFRACTION STUDY AT 2.7 ANGSTROMS
Descriptor:IGA-KAPPA MCPC603 FAB (LIGHT CHAIN), IGA-KAPPA MCPC603 FAB (HEAVY CHAIN), SULFATE ION
Authors:Satow, Y., Cohen, G.H., Padlan, E.A., Davies, D.R.
Deposit date:1984-07-09
Release date:1985-01-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Phosphocholine binding immunoglobulin Fab McPC603. An X-ray diffraction study at 2.7 A.
J.Mol.Biol., 190, 1986
3VW3
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ANTIBODY 64M-5 FAB IN COMPLEX WITH A DOUBLE-STRANDED DNA (6-4) PHOTOPRODUCT
Descriptor:Anti-(6-4) photoproduct antibody 64M-5 Fab (light chain), Anti-(6-4) photoproduct antibody 64M-5 Fab (heavy chain), DNA (5'-D(*GP*CP*GP*AP*GP*TP*GP*AP*(64T)P*(5PY)P*AP*TP*GP*GP*AP*CP*GP*G)-3'), ...
Authors:Yokoyama, H., Mizutani, R., Satow, Y.
Deposit date:2012-07-30
Release date:2013-03-27
Last modified:2014-04-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of a double-stranded DNA (6-4) photoproduct in complex with the 64M-5 antibody Fab
Acta Crystallogr.,Sect.D, 69, 2013
1ITQ
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HUMAN RENAL DIPEPTIDASE
Descriptor:RENAL DIPEPTIDASE, N-ACETYL-D-GLUCOSAMINE, ZINC ION
Authors:Nitanai, Y., Satow, Y., Adachi, H., Tsujimoto, M.
Deposit date:2002-02-02
Release date:2002-08-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of Human Renal Dipeptidase Involved in beta-Lactam Hydrolysis
J.Mol.Biol., 321, 2002
1ITU
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HUMAN RENAL DIPEPTIDASE COMPLEXED WITH CILASTATIN
Descriptor:RENAL DIPEPTIDASE, N-ACETYL-D-GLUCOSAMINE, ZINC ION, ...
Authors:Nitanai, Y., Satow, Y., Adachi, H., Tsujimoto, M.
Deposit date:2002-02-03
Release date:2002-08-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Human Renal Dipeptidase Involved in beta-Lactam Hydrolysis
J.Mol.Biol., 321, 2002
1KEG
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ANTIBODY 64M-2 FAB COMPLEXED WITH DTT(6-4)TT
Descriptor:5'-D(*TP*(64T)P*TP*T)-3', Anti-(6-4) photoproduct antibody 64M-2 Fab (light chain), Anti-(6-4) photoproduct antibody 64M-2 Fab (heavy chain), ...
Authors:Yokoyama, H., Mizutani, R., Satow, Y., Sato, K., Komatsu, Y., Ohtsuka, E., Nikaido, O.
Deposit date:2001-11-15
Release date:2002-11-15
Last modified:2012-03-28
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of the DNA (6-4) photoproduct dTT(6-4)TT in complex with the 64M-2 antibody Fab fragment implies increased antibody-binding affinity by the flanking nucleotides.
Acta Crystallogr.,Sect.D, 68, 2012
1UM2
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CRYSTAL STRUCTURE OF THE VMA1-DERIVED ENDONUCLEASE WITH THE LIGATED EXTEIN SEGMENT
Descriptor:ENDONUCLEASE PI-SCEI, 21-mer from Vacuolar ATP synthase catalytic subunit A
Authors:Mizutani, R., Anraku, Y., Satow, Y.
Deposit date:2003-09-22
Release date:2004-09-22
Last modified:2017-08-23
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Protein splicing of yeast VMA1-derived endonuclease via thiazolidine intermediates.
J.Synchrotron Radiat., 11, 2004
1AT5
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HEN EGG WHITE LYSOZYME WITH A SUCCINIMIDE RESIDUE
Descriptor:LYSOZYME, N-ACETYL-D-GLUCOSAMINE, SODIUM ION, ...
Authors:Noguchi, S., Miyawaki, K., Satow, Y.
Deposit date:1997-08-18
Release date:1998-02-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Succinimide and isoaspartate residues in the crystal structures of hen egg-white lysozyme complexed with tri-N-acetylchitotriose.
J.Mol.Biol., 278, 1998
1AT6
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HEN EGG WHITE LYSOZYME WITH A ISOASPARTATE RESIDUE
Descriptor:LYSOZYME, N-ACETYL-D-GLUCOSAMINE
Authors:Noguchi, S., Miyawaki, K., Satow, Y.
Deposit date:1997-08-19
Release date:1998-02-25
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Succinimide and isoaspartate residues in the crystal structures of hen egg-white lysozyme complexed with tri-N-acetylchitotriose.
J.Mol.Biol., 278, 1998
1EHL
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64M-2 ANTIBODY FAB COMPLEXED WITH D(5HT)(6-4)T
Descriptor:5'-(D(5HT)P*(6-4)T)-3', ANTI-(6-4) PHOTOPRODUCT ANTIBODY 64M-2 FAB (LIGHT CHAIN), ANTI-(6-4) PHOTOPRODUCT ANTIBODY 64M-2 FAB (HEAVY CHAIN)
Authors:Yokoyama, H., Mizutani, R., Satow, Y., Komatsu, Y., Ohtsuka, E., Nikaido, O.
Deposit date:2000-02-21
Release date:2001-02-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the 64M-2 antibody Fab fragment in complex with a DNA dT(6-4)T photoproduct formed by ultraviolet radiation.
J.Mol.Biol., 299, 2000
1JVA
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CRYSTAL STRUCTURE OF THE VMA1-DERIVED ENDONUCLEASE BEARING THE N AND C EXTEIN PROPEPTIDES
Descriptor:VMA1-DERIVED HOMING ENDONUCLEASE X10SSS
Authors:Mizutani, R., Satow, Y.
Deposit date:2001-08-29
Release date:2002-08-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Protein-splicing reaction via a thiazolidine intermediate: crystal structure of the VMA1-derived endonuclease bearing the N and C-terminal propeptides.
J.Mol.Biol., 316, 2002
3AK8
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CRYSTAL STRUCTURE OF THE SEP22 DODECAMER, A DPS-LIKE PROTEIN FROM SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR ENTERITIDIS
Descriptor:DNA protection during starvation protein, SULFATE ION, MAGNESIUM ION
Authors:Miyamoto, T., Asahina, Y., Miyazaki, S., Shimizu, H., Ohto, U., Noguchi, S., Satow, Y.
Deposit date:2010-07-08
Release date:2011-01-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Structures of the SEp22 dodecamer, a Dps-like protein from Salmonella enterica subsp. enterica serovar Enteritidis
Acta Crystallogr.,Sect.F, 67, 2011
3AK9
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CRYSTAL STRUCTURE OF THE SEP22 DODECAMER, A DPS-LIKE PROTEIN FROM SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR ENTERITIDIS, FE-SOAKED FORM
Descriptor:DNA protection during starvation protein, FE (II) ION, SULFATE ION, ...
Authors:Miyamoto, T., Asahina, Y., Miyazaki, S., Shimizu, H., Ohto, U., Noguchi, S., Satow, Y.
Deposit date:2010-07-08
Release date:2011-01-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structures of the SEp22 dodecamer, a Dps-like protein from Salmonella enterica subsp. enterica serovar Enteritidis
Acta Crystallogr.,Sect.F, 67, 2011
1NGP
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N1G9 (IGG1-LAMBDA) FAB FRAGMENT COMPLEXED WITH (4-HYDROXY-3-NITROPHENYL) ACETATE
Descriptor:N1G9 (IGG1-LAMBDA), SULFATE ION, 2-(4-HYDROXY-3-NITROPHENYL)ACETIC ACID
Authors:Mizutani, R., Satow, Y.
Deposit date:1995-06-23
Release date:1996-07-11
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Three-dimensional structures of the Fab fragment of murine N1G9 antibody from the primary immune response and of its complex with (4-hydroxy-3-nitrophenyl)acetate.
J.Mol.Biol., 254, 1995
1NGQ
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N1G9 (IGG1-LAMBDA) FAB FRAGMENT
Descriptor:N1G9 (IGG1-LAMBDA), SULFATE ION
Authors:Mizutani, R., Satow, Y.
Deposit date:1995-06-23
Release date:1996-07-11
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Three-dimensional structures of the Fab fragment of murine N1G9 antibody from the primary immune response and of its complex with (4-hydroxy-3-nitrophenyl)acetate.
J.Mol.Biol., 254, 1995
3W67
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CRYSTAL STRUCTURE OF MOUSE ALPHA-TOCOPHEROL TRANSFER PROTEIN IN COMPLEX WITH ALPHA-TOCOPHEROL AND PHOSPHATIDYLINOSITOL-(3,4)-BISPHOSPHATE
Descriptor:Alpha-tocopherol transfer protein, (2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL, (2R)-3-{[(S)-hydroxy{[(1S,2R,3R,4S,5S,6S)-2,3,6-trihydroxy-4,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dibutanoate
Authors:Ohto, U., Satow, Y.
Deposit date:2013-02-11
Release date:2013-05-01
Last modified:2013-09-04
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Impaired alpha-TTP-PIPs interaction underlies familial vitamin E deficiency
Science, 340, 2013
3W68
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CRYSTAL STRUCTURE OF MOUSE ALPHA-TOCOPHEROL TRANSFER PROTEIN IN COMPLEX WITH ALPHA-TOCOPHEROL AND PHOSPHATIDYLINOSITOL-(4,5)-BISPHOSPHATE
Descriptor:Alpha-tocopherol transfer protein, (2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL, (2R)-3-{[(S)-{[(2S,3R,5S,6S)-2,6-DIHYDROXY-3,4,5-TRIS(PHOSPHONOOXY)CYCLOHEXYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-(1-HYDROXYBUTOXY)PROPYL BUTYRATE, ...
Authors:Ohto, U., Satow, Y.
Deposit date:2013-02-11
Release date:2013-05-01
Last modified:2014-01-29
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Impaired alpha-TTP-PIPs interaction underlies familial vitamin E deficiency
Science, 340, 2013
1A0F
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CRYSTAL STRUCTURE OF GLUTATHIONE S-TRANSFERASE FROM ESCHERICHIA COLI COMPLEXED WITH GLUTATHIONESULFONIC ACID
Descriptor:GLUTATHIONE S-TRANSFERASE, GLUTATHIONE SULFONIC ACID
Authors:Nishida, M., Harada, S., Noguchi, S., Inoue, H., Takahashi, K., Satow, Y.
Deposit date:1997-11-29
Release date:1999-01-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Three-dimensional structure of Escherichia coli glutathione S-transferase complexed with glutathione sulfonate: catalytic roles of Cys10 and His106.
J.Mol.Biol., 281, 1998
1RNH
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STRUCTURE OF RIBONUCLEASE H PHASED AT 2 ANGSTROMS RESOLUTION BY MAD ANALYSIS OF THE SELENOMETHIONYL PROTEIN
Descriptor:RIBONUCLEASE HI, SULFATE ION
Authors:Yang, W., Hendrickson, W.A., Crouch, R.J., Satow, Y.
Deposit date:1990-07-11
Release date:1991-10-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of ribonuclease H phased at 2 A resolution by MAD analysis of the selenomethionyl protein.
Science, 249, 1990
1RTU
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USTILAGO SPHAEROGENA RIBONUCLEASE U2
Descriptor:RIBONUCLEASE U2, SULFATE ION
Authors:Noguchi, S., Satow, Y., Uchida, T., Sasaki, C., Matsuzaki, T.
Deposit date:1995-05-12
Release date:1996-11-08
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of Ustilago sphaerogena ribonuclease U2 at 1.8 A resolution.
Biochemistry, 34, 1995
1UJ3
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CRYSTAL STRUCTURE OF A HUMANIZED FAB FRAGMENT OF ANTI-TISSUE-FACTOR ANTIBODY IN COMPLEX WITH TISSUE FACTOR
Descriptor:IgG Fab light chain, IgG Fab heavy chain, tissue factor
Authors:Ohto, U., Mizutani, R., Nakamura, M., Adachi, H., Satow, Y.
Deposit date:2003-07-25
Release date:2004-07-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of a humanized Fab fragment of anti-tissue-factor antibody in complex with tissue factor.
J.Synchrotron Radiat., 11, 2004
2E56
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CRYSTAL STRUCTURE OF HUMAN MD-2
Descriptor:Lymphocyte antigen 96, N-ACETYL-D-GLUCOSAMINE, MYRISTIC ACID
Authors:Ohto, U., Satow, Y.
Deposit date:2006-12-19
Release date:2007-06-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of human MD-2 and its complex with antiendotoxic lipid IVa.
Science, 316, 2007
2E59
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CRYSTAL STRUCTURE OF HUMAN MD-2 IN COMPLEX WITH LIPID IVA
Descriptor:Lymphocyte antigen 96, N-ACETYL-D-GLUCOSAMINE, (R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE, ...
Authors:Ohto, U., Satow, Y.
Deposit date:2006-12-19
Release date:2007-06-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Crystal structures of human MD-2 and its complex with antiendotoxic lipid IVa
Science, 316, 2007
3AGX
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CRYSTAL STRUCTURE OF HUMAN HSP40 HDJ1 PEPTIDE-BINDING DOMAIN
Descriptor:DnaJ homolog subfamily B member 1
Authors:Suzuki, H., Noguchi, S., Satow, Y.
Deposit date:2010-04-12
Release date:2011-02-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Peptide-binding sites as revealed by the crystal structures of the human Hsp40 Hdj1 C-terminal domain in complex with the octapeptide from human Hsp70
Biochemistry, 49, 2010
3AGY
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CRYSTAL STRUCTURE OF HUMAN HSP40 HDJ1 PEPTIDE-BINDING DOMAIN COMPLEXED WITH A C-TERMINAL PEPTIDE OF HSP70
Descriptor:DnaJ homolog subfamily B member 1, peptide of Heat shock cognate 71 kDa protein
Authors:Suzuki, H., Noguchi, S., Satow, Y.
Deposit date:2010-04-12
Release date:2011-02-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Peptide-binding sites as revealed by the crystal structures of the human Hsp40 Hdj1 C-terminal domain in complex with the octapeptide from human Hsp70
Biochemistry, 49, 2010
3AGZ
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CRYSTAL STRUCTURE OF HUMAN HSP40 HDJ1 PEPTIDE-BINDING DOMAIN COMPLEXED WITH A C-TERMINAL PEPTIDE OF HSP70
Descriptor:DnaJ homolog subfamily B member 1, peptide of Heat shock cognate 71 kDa protein
Authors:Suzuki, H., Noguchi, S., Satow, Y.
Deposit date:2010-04-12
Release date:2011-02-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Peptide-binding sites as revealed by the crystal structures of the human Hsp40 Hdj1 C-terminal domain in complex with the octapeptide from human Hsp70
Biochemistry, 49, 2010
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