1JVA

CRYSTAL STRUCTURE OF THE VMA1-DERIVED ENDONUCLEASE BEARING THE N AND C EXTEIN PROPEPTIDES

Summary for 1JVA

Related1VDE 1EF0
DescriptorVMA1-DERIVED HOMING ENDONUCLEASE X10SSS (2 entities in total)
Functional Keywordsprotein-splicing, vma1-derived endonuclease, intein, thiazolidine intermediate, vde, hydrolase
Biological sourceSaccharomyces cerevisiae (baker's yeast)
Cellular locationEndomembrane system P17255
Total number of polymer chains2
Total molecular weight106300.29
Authors
Mizutani, R.,Satow, Y. (deposition date: 2001-08-29, release date: 2002-08-29, Last modification date: 2011-07-13)
Primary citation
Mizutani, R.,Nogami, S.,Kawasaki, M.,Ohya, Y.,Anraku, Y.,Satow, Y.
Protein-splicing reaction via a thiazolidine intermediate: crystal structure of the VMA1-derived endonuclease bearing the N and C-terminal propeptides.
J.Mol.Biol., 316:919-929, 2002
PubMed: 11884132 (PDB entries with the same primary citation)
DOI: 10.1006/jmbi.2001.5357
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.1 Å)
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Structure validation

ClashscoreRamachandran outliersSidechain outliers151.1%2.3%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

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More Biological unit images

Molmil generated image of 1jva
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Molmil generated image of 1jva
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(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (1jva.pdb1.gz [72.22 KB])
Coordinate files for Biological unit (1jva.pdb2.gz [72.8 KB])