Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1JXH
DownloadVisualize
BU of 1jxh by Molmil
4-Amino-5-hydroxymethyl-2-methylpyrimidine Phosphate Kinase from Salmonella typhimurium
Descriptor: PHOSPHOMETHYLPYRIMIDINE KINASE, SULFATE ION
Authors:Cheng, G, Bennett, E.M, Begley, T.P, Ealick, S.E.
Deposit date:2001-09-07
Release date:2002-02-27
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase from Salmonella typhimurium at 2.3 A resolution.
Structure, 10, 2002
1JXI
DownloadVisualize
BU of 1jxi by Molmil
4-Amino-5-hydroxymethyl-2-methylpyrimidine Phosphate Kinase from Salmonella typhimurium complexed with 4-Amino-5-hydroxymethyl-2-methylpyrimidine
Descriptor: 4-AMINO-5-HYDROXYMETHYL-2-METHYLPYRIMIDINE, PHOSPHOMETHYLPYRIMIDINE KINASE, SULFATE ION
Authors:Cheng, G, Bennett, E.M, Begley, T.P, Ealick, S.E.
Deposit date:2001-09-07
Release date:2002-02-27
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Crystal structure of 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase from Salmonella typhimurium at 2.3 A resolution.
Structure, 10, 2002
5GZO
DownloadVisualize
BU of 5gzo by Molmil
Structure of neutralizing antibody bound to Zika envelope protein
Descriptor: Antibody heavy chain, Antibody light chain, Genome polyprotein
Authors:Wang, Q, Yang, H, Liu, X, Dai, L, Ma, T, Qi, J, Wong, G, Peng, R, Liu, S, Li, J, Li, S, Song, J, Liu, J, He, J, Yuan, H, Xiong, Y, Liao, Y, Li, J, Yang, J, Tong, Z, Griffin, B, Bi, Y, Liang, M, Xu, X, Cheng, G, Wang, P, Qiu, X, Kobinger, G, Shi, Y, Yan, J, Gao, G.F.
Deposit date:2016-09-29
Release date:2017-01-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.755 Å)
Cite:Molecular determinants of human neutralizing antibodies isolated from a patient infected with Zika virus
Sci Transl Med, 8, 2016
5GZN
DownloadVisualize
BU of 5gzn by Molmil
Structure of neutralizing antibody bound to Zika envelope protein
Descriptor: Antibody Heavy chain, Antibody light chain, Genome polyprotein
Authors:Wang, Q, Yang, H, Liu, X, Dai, L, Ma, T, Qi, J, Wong, G, Peng, R, Liu, S, Li, J, Li, S, Song, J, Liu, J, He, J, Yuan, H, Xiong, Y, Liao, Y, Li, J, Yang, J, Tong, Z, Griffin, B, Bi, Y, Liang, M, Xu, X, Cheng, G, Wang, P, Qiu, X, Kobinger, G, Shi, Y, Yan, J, Gao, G.F.
Deposit date:2016-09-29
Release date:2016-12-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:Molecular determinants of human neutralizing antibodies isolated from a patient infected with Zika virus
Sci Transl Med, 8, 2016
4GJH
DownloadVisualize
BU of 4gjh by Molmil
Crystal Structure of the TRAF domain of TRAF5
Descriptor: TNF receptor-associated factor 5
Authors:Zhang, P, Reichardt, A, Liang, H, Wang, Y, Cheng, D, Aliyari, R, Cheng, G, Liu, Y.
Deposit date:2012-08-09
Release date:2012-11-28
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.805 Å)
Cite:Single Amino Acid Substitutions Confer the Antiviral Activity of the TRAF3 Adaptor Protein onto TRAF5
Sci.Signal., 5, 2012
4EFO
DownloadVisualize
BU of 4efo by Molmil
Crystal structure of the ubiquitin-like domain of human TBK1
Descriptor: Serine/threonine-protein kinase TBK1
Authors:Li, J, Li, J, Miyahira, A, Sun, J, Liu, Y, Cheng, G, Liang, H.
Deposit date:2012-03-30
Release date:2012-06-27
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.769 Å)
Cite:Crystal structure of the ubiquitin-like domain of human TBK1.
Protein Cell, 3, 2012
1KZZ
DownloadVisualize
BU of 1kzz by Molmil
DOWNSTREAM REGULATOR TANK BINDS TO THE CD40 RECOGNITION SITE ON TRAF3
Descriptor: TNF receptor associated factor 3, TRAF family member-associated NF-kappa-b activator
Authors:Li, C, Ni, C.-Z, Havert, M.L, Cabezas, E, He, J, Kaiser, D, Reed, J.C, Satterthwait, A.C, Cheng, G, Ely, K.R.
Deposit date:2002-02-08
Release date:2002-04-10
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Downstream regulator TANK binds to the CD40 recognition site on TRAF3.
Structure, 10, 2002
1L0A
DownloadVisualize
BU of 1l0a by Molmil
DOWNSTREAM REGULATOR TANK BINDS TO THE CD40 RECOGNITION SITE ON TRAF3
Descriptor: TNF receptor associated factor 3, TRAF family member-associated NF-kappa-b activator
Authors:Li, C, Ni, C.-Z, Havert, M.L, Cabezas, E, He, J, Kaiser, D, Reed, J.C, Satterthwait, A.C, Cheng, G, Ely, K.R.
Deposit date:2002-02-08
Release date:2002-04-10
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Downstream regulator TANK binds to the CD40 recognition site on TRAF3.
Structure, 10, 2002
4J1J
DownloadVisualize
BU of 4j1j by Molmil
Leanyer orthobunyavirus nucleoprotein-ssDNA complex
Descriptor: DNA (5'-D(P*AP*CP*CP*AP*AP*AP*CP*AP*AP*CP*CP*CP*AP*CP*CP*CP*A)-3'), Nucleocapsid
Authors:Niu, F, Shaw, N, Wang, Y, Jiao, L, Ding, W, Li, X, Zhu, P, Upur, H, Ouyang, S, Cheng, G, Liu, Z.J.
Deposit date:2013-02-01
Release date:2013-04-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structure of the Leanyer orthobunyavirus nucleoprotein-RNA complex reveals unique architecture for RNA encapsidation.
Proc.Natl.Acad.Sci.USA, 110, 2013
4J0U
DownloadVisualize
BU of 4j0u by Molmil
Crystal structure of IFIT5/ISG58
Descriptor: Interferon-induced protein with tetratricopeptide repeats 5
Authors:Liu, Y, Liang, H, Feng, F, Yuan, L, Wang, Y.E, Crowley, C, Lv, Z, Li, J, Zeng, S, Cheng, G.
Deposit date:2013-01-31
Release date:2013-02-13
Method:X-RAY DIFFRACTION (1.969 Å)
Cite:Crystal Structure of IFIT5
To be Published
4J1G
DownloadVisualize
BU of 4j1g by Molmil
Leanyer orthobunyavirus nucleoprotein-ssRNA complex
Descriptor: Nucleocapsid, RNA (45-MER)
Authors:Niu, F, Shaw, N, Wang, Y, Jiao, L, Ding, W, Li, X, Zhu, P, Upur, H, Ouyang, S, Cheng, G, Liu, Z.J.
Deposit date:2013-02-01
Release date:2013-04-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.789 Å)
Cite:Structure of the Leanyer orthobunyavirus nucleoprotein-RNA complex reveals unique architecture for RNA encapsidation.
Proc.Natl.Acad.Sci.USA, 110, 2013
4JBK
DownloadVisualize
BU of 4jbk by Molmil
Molecular basis for abrogation of activation of pro-inflammatory cytokines
Descriptor: DNA (5'-D(P*GP*GP*AP*AP*TP*TP*AP*TP*AP*AP*TP*TP*CP*C)-3'), Interferon-activable protein 202
Authors:Ru, H, Ni, X, Crowley, C, Zhao, L, Ding, W, Hung, L.-W, Shaw, N, Cheng, G, Liu, Z.-J.
Deposit date:2013-02-19
Release date:2013-06-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.963 Å)
Cite:Structural basis for termination of AIM2-mediated signaling by p202
Cell Res., 23, 2013
4JBM
DownloadVisualize
BU of 4jbm by Molmil
Structure of murine DNA binding protein bound with ds DNA
Descriptor: DNA (5'-D(*GP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*C)-3'), Interferon-inducible protein AIM2
Authors:Ru, H, Ni, X, Crowley, C, Zhao, L, Ding, W, Hung, L.-W, Shaw, N, Cheng, G, Liu, Z.-J.
Deposit date:2013-02-19
Release date:2013-06-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.218 Å)
Cite:Structural basis for termination of AIM2-mediated signaling by p202
Cell Res., 23, 2013
4JBJ
DownloadVisualize
BU of 4jbj by Molmil
Structural mimicry for functional antagonism
Descriptor: Interferon-activable protein 202
Authors:Ru, H, Ni, X, Ma, F, Zhao, L, Ding, W, Hung, L.-W, Shaw, N, Cheng, G, Liu, Z.-J.
Deposit date:2013-02-19
Release date:2013-06-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.692 Å)
Cite:Structural basis for termination of AIM2-mediated signaling by p202
Cell Res., 23, 2013
7VMU
DownloadVisualize
BU of 7vmu by Molmil
Crystal Structure of SARS-CoV Spike Receptor-Binding Domain Complexed with Neutralizing Antibody
Descriptor: Spike protein S1, scFv E4
Authors:Guo, Y, Wang, W, Jiao, P, Yang, H, Rao, Z, Cheng, G.
Deposit date:2021-10-09
Release date:2021-11-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:Antibody engineering improves neutralization activity against K417 spike mutant SARS-CoV-2 variants.
Cell Biosci, 12, 2022
5GZR
DownloadVisualize
BU of 5gzr by Molmil
Zika virus E protein complexed with a neutralizing antibody Z23-Fab
Descriptor: Z23 Fab heavy chain, Z23 Fab light chain, structural protein E, ...
Authors:Gao, G.G, Shi, Y, Peng, R, Liu, S.
Deposit date:2016-10-01
Release date:2016-11-30
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (9.4 Å)
Cite:Molecular determinants of human neutralizing antibodies isolated from a patient infected with Zika virus
Sci Transl Med, 8, 2016
4GHU
DownloadVisualize
BU of 4ghu by Molmil
Crystal structure of TRAF3/Cardif
Descriptor: Mitochondrial antiviral-signaling protein, TNF receptor-associated factor 3
Authors:Zhang, P.
Deposit date:2012-08-08
Release date:2012-11-28
Method:X-RAY DIFFRACTION (2.199 Å)
Cite:Single Amino Acid Substitutions Confer the Antiviral Activity of the TRAF3 Adaptor Protein onto TRAF5
Sci.Signal., 5, 2012
6INH
DownloadVisualize
BU of 6inh by Molmil
A glycosyltransferase with UDP and the substrate
Descriptor: 1-O-[(8alpha,9beta,10alpha,13alpha)-13-(beta-D-glucopyranosyloxy)-18-oxokaur-16-en-18-yl]-beta-D-glucopyranose, GLYCEROL, UDP-glycosyltransferase 76G1, ...
Authors:Zhu, X.
Deposit date:2018-10-25
Release date:2019-07-31
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Hydrophobic recognition allows the glycosyltransferase UGT76G1 to catalyze its substrate in two orientations.
Nat Commun, 10, 2019
6INF
DownloadVisualize
BU of 6inf by Molmil
a glycosyltransferase complex with UDP
Descriptor: UDP-glycosyltransferase 76G1, URIDINE-5'-DIPHOSPHATE
Authors:Zhu, X, Yang, T, Naismith, J.H.
Deposit date:2018-10-25
Release date:2019-07-31
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Hydrophobic recognition allows the glycosyltransferase UGT76G1 to catalyze its substrate in two orientations.
Nat Commun, 10, 2019
6ING
DownloadVisualize
BU of 6ing by Molmil
A complex structure of H25A mutant of glycosyltransferase with UDP
Descriptor: GLYCEROL, UDP-glycosyltransferase 76G1, URIDINE-5'-DIPHOSPHATE
Authors:Zhu, X, Naismith, J.H.
Deposit date:2018-10-25
Release date:2019-07-31
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.698 Å)
Cite:Hydrophobic recognition allows the glycosyltransferase UGT76G1 to catalyze its substrate in two orientations.
Nat Commun, 10, 2019
6INI
DownloadVisualize
BU of 6ini by Molmil
a glycosyltransferase complex with UDP and the product
Descriptor: (8alpha,9beta,10alpha,13alpha)-13-{[beta-D-glucopyranosyl-(1->2)-[beta-D-glucopyranosyl-(1->3)]-beta-D-glucopyranosyl]oxy}kaur-16-en-18-oic acid, 1-O-[(8alpha,9beta,10alpha,13alpha)-13-(beta-D-glucopyranosyloxy)-18-oxokaur-16-en-18-yl]-beta-D-glucopyranose, GLYCEROL, ...
Authors:Zhu, X, Yang, T, Naismith, J.H.
Deposit date:2018-10-25
Release date:2019-07-31
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Hydrophobic recognition allows the glycosyltransferase UGT76G1 to catalyze its substrate in two orientations.
Nat Commun, 10, 2019
4QGU
DownloadVisualize
BU of 4qgu by Molmil
protein domain complex with ssDNA
Descriptor: DNA (5'-D(P*AP*GP*GP*CP*CP*GP*GP*CP*GP*TP*GP*A)-3'), Gamma-interferon-inducible protein 16
Authors:Ni, X, Ru, H, Zhao, L, Shaw, N, Ding, W, Songying, O, Liu, Z.-J.
Deposit date:2014-05-25
Release date:2015-06-17
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.545 Å)
Cite:New insights into the structural basis of DNA recognition by HINa and HINb domains of IFI16.
J Mol Cell Biol, 8, 2016
6NZV
DownloadVisualize
BU of 6nzv by Molmil
Crystal structure of HCV NS3/4A protease in complex with compound 12
Descriptor: (1aR,5S,8S,9S,10R,22aR)-5-tert-butyl-N-[(1R,2R)-2-(difluoromethyl)-1-{[(1-methylcyclopropyl)sulfonyl]carbamoyl}cyclopropyl]-9-ethyl-14-methoxy-3,6-dioxo-1,1a,3,4,5,6,9,10,18,19,20,21,22,22a-tetradecahydro-8H-7,10-methanocyclopropa[18,19][1,10,3,6]dioxadiazacyclononadecino[11,12-b]quinoxaline-8-carboxamide, HCV NS3/4A protease, SULFATE ION, ...
Authors:Appleby, T.C, Taylor, J.G.
Deposit date:2019-02-14
Release date:2019-07-10
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Discovery of the pan-genotypic hepatitis C virus NS3/4A protease inhibitor voxilaprevir (GS-9857): A component of Vosevi®.
Bioorg.Med.Chem.Lett., 29, 2019
2GKW
DownloadVisualize
BU of 2gkw by Molmil
Key contacts promote recongnito of BAFF-R by TRAF3
Descriptor: TNF receptor-associated factor 3, Tumor necrosis factor receptor superfamily member 13C
Authors:Ely, K.R.
Deposit date:2006-04-03
Release date:2006-04-11
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Key molecular contacts promote recognition of the BAFF receptor by TNF receptor-associated factor 3: implications for intracellular signaling regulation.
J.Immunol., 173, 2004
4EF4
DownloadVisualize
BU of 4ef4 by Molmil
Crystal structure of STING CTD complex with c-di-GMP
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), CALCIUM ION, Transmembrane protein 173
Authors:Ouyang, S, Ru, H, Shaw, N, Jiang, Y, Niu, F, Zhu, Y, Qiu, W, Li, Y, Liu, Z.-J.
Deposit date:2012-03-29
Release date:2012-05-16
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.147 Å)
Cite:Structural analysis of the STING adaptor protein reveals a hydrophobic dimer interface and mode of cyclic di-GMP binding
Immunity, 36, 2012

 

123>

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon