PDB: 14016 resultsInfo pagesStatus searchChemie searchBIRD

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1V80	Solution structures of ubiquitin at 30 bar and 3 kbar Descriptor: Ubiquitin/60s ribosomal protein L40 fusion Authors: Kitahara, R, Yokoyama, S, Akasaka, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2003-12-27 Release date: 2005-02-15 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: NMR snapshots of a fluctuating protein structure: ubiquitin at 30 bar-3 kbar. J.Mol.Biol., 347, 2005
7B5R	Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: CUL1-RBX1-SKP1-SKP2-CKSHS1-Cyclin A-CDK2-p27 Descriptor: Cullin-1, Cyclin-A2, Cyclin-dependent kinase 2, ... Authors: Horn-Ghetko, D, Prabu, J.R, Schulman, B.A. Deposit date: 2020-12-07 Release date: 2021-02-10 Last modified: 2021-03-10 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Ubiquitin ligation to F-box protein targets by SCF-RBR E3-E3 super-assembly. Nature, 590, 2021
2DEN	Solution Structure of the Ubiquitin-Associated Domain of Human BMSC-UbP and its Complex with Ubiquitin Descriptor: Immunoglobulin G-binding protein G,Ubiquitin-like protein 7, Polyubiquitin-B Authors: Hu, H.Y, Lin, D.H, Chang, Y.G. Deposit date: 2006-02-14 Release date: 2006-06-13 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Solution structure of the ubiquitin-associated domain of human BMSC-UbP and its complex with ubiquitin Protein Sci., 15, 2006
2A4D	Structure of the human ubiquitin-conjugating enzyme E2 variant 1 (UEV-1) Descriptor: Ubiquitin-conjugating enzyme E2 variant 1 Authors: Walker, J.R, Avvakumov, G.V, Xue, S, Newman, E.M, Mackenzie, F, Weigelt, J, Sundstrom, M, Arrowsmith, C, Edwards, A, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC) Deposit date: 2005-06-28 Release date: 2005-07-12 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.69 Å) Cite: A human ubiquitin conjugating enzyme (E2)-HECT E3 ligase structure-function screen. Mol Cell Proteomics, 11, 2012
2BF8	Crystal structure of SUMO modified ubiquitin conjugating enzyme E2- 25K Descriptor: UBIQUITIN-CONJUGATING ENZYME E2-25 KDA, UBIQUITIN-LIKE PROTEIN SMT3C Authors: Pichler, A, Knipscheer, P, Oberhofer, E, Van Dijk, W.J, Korner, R, Velgaard Olsen, J, Jentsch, S, Melchior, F, Sixma, T.K. Deposit date: 2004-12-06 Release date: 2005-02-16 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Sumo Imodification of the Ubiquitin Conjugating Enzyme E2-25K Nat.Struct.Mol.Biol., 12, 2005
2CWB	Solution Structure of the Ubiquitin-Associated Domain of Human BMSC-UbP and its Complex with Ubiquitin Descriptor: Immunoglobulin G-binding protein G,Ubiquitin-like protein 7 Authors: Chang, Y.G, Song, A.X, Gao, Y.G, Shi, Y.H, Lin, X.J, Cao, X.T, Lin, D.H, Hu, H.Y. Deposit date: 2005-06-17 Release date: 2006-06-06 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Solution structure of the ubiquitin-associated domain of human BMSC-UbP and its complex with ubiquitin. Protein Sci., 15, 2006
6QHK	PAO-linked dimer of the catalytic domain of the human ubiquitin-conjugating enzyme UBE2S Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Phenylarsine oxide, ... Authors: Liess, A.K.L, Lorenz, S. Deposit date: 2019-01-16 Release date: 2019-07-17 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.96 Å) Cite: Autoinhibition Mechanism of the Ubiquitin-Conjugating Enzyme UBE2S by Autoubiquitination. Structure, 27, 2019
4GSW	Crystal structure of ubiquitin from Entamoeba histolytica to 2.15 Angstrom Descriptor: SULFATE ION, Ubiquitin Authors: Bosch, D.E, Siderovski, D.P. Deposit date: 2012-08-28 Release date: 2012-12-12 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Structural Determinants of Ubiquitin Conjugation in Entamoeba histolytica. J.Biol.Chem., 288, 2013
7RMA	Structure of the fourth UIM (Ubiquitin Interacting Motif) of ANKRD13D in complex with a high affinity UbV (Ubiquitin Variant) Descriptor: Ankyrin repeat domain-containing protein 13D, SODIUM ION, SULFATE ION, ... Authors: Singer, A.U, Manczyk, N, Veggiani, G, Sicheri, F, Sidhu, S.S. Deposit date: 2021-07-27 Release date: 2022-05-11 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2 Å) Cite: Panel of Engineered Ubiquitin Variants Targeting the Family of Human Ubiquitin Interacting Motifs. Acs Chem.Biol., 17, 2022
4II2	Crystal structure of Ubiquitin activating enzyme 1 (Uba1) in complex with the Ub E2 Ubc4, ubiquitin, and ATP/Mg Descriptor: 1,2-ETHANEDIOL, 2-(2-METHOXYETHOXY)ETHANOL, ADENOSINE-5'-TRIPHOSPHATE, ... Authors: Olsen, S.K, Lima, C.D. Deposit date: 2012-12-19 Release date: 2013-02-13 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structure of a ubiquitin E1-E2 complex: insights to E1-E2 thioester transfer. Mol.Cell, 49, 2013
6QH3	Catalytic domain of the human ubiquitin-conjugating enzyme UBE2S C118M Descriptor: 1,2-ETHANEDIOL, Ubiquitin-conjugating enzyme E2 S Authors: Liess, A.K.L, Lorenz, S. Deposit date: 2019-01-15 Release date: 2019-07-17 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Autoinhibition Mechanism of the Ubiquitin-Conjugating Enzyme UBE2S by Autoubiquitination. Structure, 27, 2019
8C07	Structure of HECT E3 UBR5 forming K48 linked Ubiquitin chains Descriptor: 5-azanylpentan-2-one, E3 ubiquitin-protein ligase UBR5, Polyubiquitin-B Authors: Hehl, L.A, Prabu, J.R, Schulman, B.A. Deposit date: 2022-12-16 Release date: 2023-08-23 Last modified: 2024-02-14 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Structural snapshots along K48-linked ubiquitin chain formation by the HECT E3 UBR5. Nat.Chem.Biol., 20, 2024
2GBJ	Crystal Structure of the 9-10 8 Glycine Insertion Mutant of Ubiquitin. Descriptor: Ubiquitin Authors: Ferraro, D.M, Ferraro, D.J, Ramaswamy, S, Robertson, A.D. Deposit date: 2006-03-10 Release date: 2006-05-16 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.35 Å) Cite: Structures of Ubiquitin Insertion Mutants Support Site-specific Reflex Response to Insertions Hypothesis. J.Mol.Biol., 359, 2006
2GBK	Crystal Structure of the 9-10 MoaD Insertion Mutant of Ubiquitin Descriptor: Ubiquitin Authors: Ferraro, D.M, Ferraro, D.J, Ramaswamy, S, Robertson, A.D. Deposit date: 2006-03-10 Release date: 2006-05-16 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.99 Å) Cite: Structures of Ubiquitin Insertion Mutants Support Site-specific Reflex Response to Insertions Hypothesis. J.Mol.Biol., 359, 2006
4I6N	Crystal structure of Trichinella spiralis UCH37 catalytic domain bound to Ubiquitin vinyl methyl ester Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, METHYL 4-AMINOBUTANOATE, SODIUM ION, ... Authors: Morrow, M.E, Ronau, J.A, White, R.R, Artavanis-Tsakonas, K, Das, C. Deposit date: 2012-11-29 Release date: 2013-05-29 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.701 Å) Cite: Stabilization of an Unusual Salt Bridge in Ubiquitin by the Extra C-Terminal Domain of the Proteasome-Associated Deubiquitinase UCH37 as a Mechanism of Its Exo Specificity. Biochemistry, 52, 2013
6DC6	Crystal structure of human ubiquitin activating enzyme E1 (Uba1) in complex with ubiquitin Descriptor: MAGNESIUM ION, PYROPHOSPHATE 2-, Ubiquitin, ... Authors: Lv, Z, Yuan, L, Williams, K.M, Atkison, J.H, Olsen, S.K. Deposit date: 2018-05-04 Release date: 2018-10-10 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (3.14 Å) Cite: Crystal structure of a human ubiquitin E1-ubiquitin complex reveals conserved functional elements essential for activity. J. Biol. Chem., 293, 2018
4IG7	Crystal structure of Trichinella spiralis UCH37 bound to Ubiquitin vinyl methyl ester Descriptor: METHYL 4-AMINOBUTANOATE, Ubiquitin, Ubiquitin C-terminal hydrolase 37 Authors: Das, C, Kim, M.I, Morrow, M.E. Deposit date: 2012-12-16 Release date: 2013-05-29 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.996 Å) Cite: Stabilization of an Unusual Salt Bridge in Ubiquitin by the Extra C‑Terminal Domain of the Proteasome-Associated Deubiquitinase UCH37 as a Mechanism of Its Exo Specificity. Biochemistry, 52, 2013
2D3G	Double sided ubiquitin binding of Hrs-UIM Descriptor: ubiquitin, ubiquitin interacting motif from hepatocyte growth factor-regulated tyrosine kinase substrate Authors: Hirano, S, Kawasaki, M, Kato, R, Wakatsuki, S. Deposit date: 2005-09-28 Release date: 2005-12-20 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Double-sided ubiquitin binding of Hrs-UIM in endosomal protein sorting Nat.Struct.Mol.Biol., 13, 2006
3L1X	Crystal Structure of U-box Domain of Human E4B Ubiquitin Ligase Descriptor: Ubiquitin conjugation factor E4 B Authors: Benirschke, R, Thompson, J.R, Mer, G. Deposit date: 2009-12-14 Release date: 2010-05-05 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Molecular Basis for the Association of Human E4B U Box Ubiquitin Ligase with E2-Conjugating Enzymes UbcH5c and Ubc4. Structure, 18, 2010
1Y6L	Human ubiquitin conjugating enzyme E2E2 Descriptor: Ubiquitin-conjugating enzyme E2E2 Authors: Walker, J.R, Avvakumov, G.V, Newman, E.M, Mackenzie, F, Kozieradzki, I, Bochkarev, A, Sundstrom, M, Arrowsmith, C, Edwards, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC) Deposit date: 2004-12-06 Release date: 2005-01-11 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.85 Å) Cite: A human ubiquitin conjugating enzyme (E2)-HECT E3 ligase structure-function screen. Mol Cell Proteomics, 11, 2012
1YH2	Ubiquitin-Conjugating Enzyme HSPC150 Descriptor: HSPC150 protein similar to ubiquitin-conjugating enzyme Authors: Walker, J.R, Avvakumov, G.V, Newman, E.M, Mackenzie, F, Kozieradzki, I, Sundstrom, M, Arrowsmith, C, Edwards, A, Bochkarev, A, Dhe-paganon, S, Structural Genomics Consortium (SGC) Deposit date: 2005-01-06 Release date: 2005-02-15 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2 Å) Cite: A human ubiquitin conjugating enzyme (E2)-HECT E3 ligase structure-function screen. Mol Cell Proteomics, 11, 2012
4LCD	Structure of an Rsp5xUbxSna3 complex: Mechanism of ubiquitin ligation and lysine prioritization by a HECT E3 Descriptor: E3 ubiquitin-protein ligase RSP5, Protein SNA3, Ubiquitin Authors: Kamadurai, H.B, Miller, D, Schulman, B.A. Deposit date: 2013-06-21 Release date: 2013-08-14 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Mechanism of ubiquitin ligation and lysine prioritization by a HECT E3. Elife, 2, 2013
1ZDN	Ubiquitin-conjugating enzyme E2S Descriptor: SODIUM ION, Ubiquitin-conjugating enzyme E2S Authors: Walker, J.R, Avvakumov, G.V, Xue, S, Newman, E.M, Mackenzie, F, Sundstrom, M, Arrowsmith, C, Edwards, A, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC) Deposit date: 2005-04-14 Release date: 2005-05-03 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.93 Å) Cite: A human ubiquitin conjugating enzyme (E2)-HECT E3 ligase structure-function screen. Mol Cell Proteomics, 11, 2012
1ZC1	Ufd1 exhibits the AAA-ATPase fold with two distinct ubiquitin interaction sites Descriptor: Ubiquitin fusion degradation protein 1 Authors: Park, S, Isaacson, R, Kim, H.T, Silver, P.A, Wagner, G. Deposit date: 2005-04-10 Release date: 2005-07-26 Last modified: 2022-03-02 Method: SOLUTION NMR Cite: Ufd1 Exhibits the AAA-ATPase Fold with Two Distinct Ubiquitin Interaction Sites Structure, 13, 2005
3H1U	Structure of ubiquitin in complex with Cd ions Descriptor: CADMIUM ION, Ubiquitin Authors: Qureshi, I.A, Ferron, F, Cheung, P, Lescar, J. Deposit date: 2009-04-14 Release date: 2009-05-05 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3 Å) Cite: Crystallographic structure of ubiquitin in complex with cadmium ions BMC RES NOTES, 2, 2009

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