PDB: 218853 resultsInfo pagesStatus searchChemie searchBIRD

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6YRJ	SFX structure of dye-type peroxidase DtpB in the ferric state Descriptor: MAGNESIUM ION, PROTOPORPHYRIN IX CONTAINING FE, Putative iron-dependent peroxidase Authors: Lucic, M, Axford, D.A, Owen, R.L, Worrall, J.A.R, Hough, M.A. Deposit date: 2020-04-20 Release date: 2021-01-13 Last modified: 2021-01-20 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Serial Femtosecond Zero Dose Crystallography Captures a Water-Free Distal Heme Site in a Dye-Decolorising Peroxidase to Reveal a Catalytic Role for an Arginine in Fe IV =O Formation. Angew.Chem.Int.Ed.Engl., 59, 2020
7NES	Crystal structure of the v-Src SH3 domain N117D-V124L mutant Descriptor: GLYCINE, v-Src SH3 domain Authors: Camara-Artigas, A, Salinas-Garcia, M.C. Deposit date: 2021-02-04 Release date: 2021-06-02 Last modified: 2021-06-16 Method: X-RAY DIFFRACTION (1.35 Å) Cite: The impact of oncogenic mutations of the viral Src kinase on the structure and stability of the SH3 domain. Acta Crystallogr D Struct Biol, 77, 2021
7NER	Crystal structure of the v-Src SH3 domain Q128R mutant Descriptor: SULFATE ION, TETRAETHYLENE GLYCOL, v-Src SH3 domain Authors: Camara-Artigas, A, Salinas-Garcia, M.C. Deposit date: 2021-02-04 Release date: 2021-06-02 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.55 Å) Cite: The impact of oncogenic mutations of the viral Src kinase on the structure and stability of the SH3 domain. Acta Crystallogr D Struct Biol, 77, 2021
7NET	Crystal structure of the v-Src SH3 domain W95R-I96T mutant Descriptor: DI(HYDROXYETHYL)ETHER, SULFATE ION, TRIETHYLENE GLYCOL, ... Authors: Camara-Artigas, A, Salinas-Garcia, M.C. Deposit date: 2021-02-04 Release date: 2021-06-02 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.5 Å) Cite: The impact of oncogenic mutations of the viral Src kinase on the structure and stability of the SH3 domain. Acta Crystallogr D Struct Biol, 77, 2021
6Z68	A novel metagenomic alpha/beta-fold esterase Descriptor: Acetyl esterase/lipase, DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, ... Authors: Bollinger, A, Thies, S, Hoeppner, A, Kobus, S, Jaeger, K.-E, Smits, S.H.J. Deposit date: 2020-05-28 Release date: 2020-12-30 Last modified: 2021-06-16 Method: X-RAY DIFFRACTION (1.35 Å) Cite: Crystal structures of a novel family IV esterase in free and substrate-bound form. Febs J., 288, 2021
6ZFW	X-ray structure of the soluble N-terminal domain of T. cruzi PEX-14 Descriptor: ACETATE ION, BETA-MERCAPTOETHANOL, GLYCEROL, ... Authors: Softley, C.A, Ostertag, M.O, Sattler, M, Popowicz, G.P. Deposit date: 2020-06-18 Release date: 2020-12-09 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.58 Å) Cite: Deep learning model predicts water interaction sites on the surface of proteins using limited-resolution data. Chem.Commun.(Camb.), 56, 2020
8GDU	Crystal structure of a mutant methyl transferase from Methanosarcina acetivorans, Northeast Structural Genomics Consortium (NESG) Target MvR53-11M Descriptor: Methyltransferase domain-containing protein, S-ADENOSYL-L-HOMOCYSTEINE Authors: Forouhar, F, Banayan, N.E, Loughlin, B.L, Singh, S, Wong, V, Hunt, H.S, Handelman, S.K, Price, N, Hunt, J.F. Deposit date: 2023-03-06 Release date: 2024-01-24 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.01 Å) Cite: Systematic enhancement of protein crystallization efficiency by bulk lysine-to-arginine (KR) substitution. Protein Sci., 33, 2024
8GDY	Crystal structure of the human PDI first domain with 9 mutations Descriptor: 1,2-ETHANEDIOL, Protein disulfide-isomerase, THIOCYANATE ION Authors: Forouhar, F, Banayan, N.E, Loughlin, B.L, Singh, S, Wong, V, Hunt, H.S, Handelman, S.K, Price, N, Hunt, J.F. Deposit date: 2023-03-06 Release date: 2024-01-24 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Systematic enhancement of protein crystallization efficiency by bulk lysine-to-arginine (KR) substitution. Protein Sci., 33, 2024
6OZ4	Crystal structure of broadly neutralizing antibody N49P6 Fab in complex with HIV-1 BG505 SOSIP.664 Env trimer ectodomain. Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp160, ... Authors: Tolbert, W.D, Pazgier, M. Deposit date: 2019-05-15 Release date: 2020-08-19 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (4.05 Å) Cite: Near-Pan-neutralizing, Plasma Deconvoluted Antibody N49P6 Mimics Host Receptor CD4 in Its Quaternary Interactions with the HIV-1 Envelope Trimer. Mbio, 2021
6Z69	A novel metagenomic alpha/beta-fold esterase Descriptor: 7-hydroxy-4-methyl-2H-chromen-2-one, Acetyl esterase/lipase, MAGNESIUM ION, ... Authors: Bollinger, A, Thies, S, Hoeppner, A, Kobus, S, Jaeger, K.-E, Smits, S.H.J. Deposit date: 2020-05-28 Release date: 2020-12-30 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.81 Å) Cite: Crystal structures of a novel family IV esterase in free and substrate-bound form. Febs J., 288, 2021
6OZ2	Crystal structure of the broadly neutralizing antibody N49P6 Fab in complex with HIV-1 Clade A/E strain 93TH057 gp120 core. Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, N49P6 antibody Fab heavy chain, N49P6 antibody Fab light chain, ... Authors: Tolbert, W.D, Pazgier, M. Deposit date: 2019-05-15 Release date: 2020-08-19 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.55 Å) Cite: Near-Pan-neutralizing, Plasma Deconvoluted Antibody N49P6 Mimics Host Receptor CD4 in Its Quaternary Interactions with the HIV-1 Envelope Trimer. Mbio, 2021
8HDU	De novo design cavitated protein without predefined topology Descriptor: De novo design cavitated protein Authors: Hu, X, Xu, Y. Deposit date: 2022-11-06 Release date: 2023-01-18 Last modified: 2024-04-24 Method: X-RAY DIFFRACTION (2.71 Å) Cite: De novo design of cavity-containing proteins with a backbone-centered neural network energy function. Structure, 32, 2024
8HDV	De novo design cavitated protein without predefined topology Descriptor: De novo design cavitated protein Authors: Hu, X, Xu, Y. Deposit date: 2022-11-06 Release date: 2023-01-18 Last modified: 2024-04-24 Method: X-RAY DIFFRACTION (2.65 Å) Cite: De novo design of cavity-containing proteins with a backbone-centered neural network energy function. Structure, 32, 2024
8HFS	The structure of LcnA, LciA, and the man-PTS of Lactococcus lactis Descriptor: Bacteriocin lactococcin-A, Lactococcin-A immunity protein, Mannose-specific PTS system, ... Authors: Wang, J.W. Deposit date: 2022-11-12 Release date: 2023-02-08 Last modified: 2023-04-19 Method: ELECTRON MICROSCOPY (2.98 Å) Cite: Structural Basis of the Mechanisms of Action and Immunity of Lactococcin A, a Class IId Bacteriocin. Appl.Environ.Microbiol., 89, 2023
7RCO	Crystal structure of human TGF-beta-2 bound to 4A11.V2 Fab Descriptor: 4A11.V2 Fab Heavy Chain, 4A11.V2 Fab Light Chain, Transforming growth factor beta-2 Authors: Yin, J, Lupardus, P.J, Sudhamsu, J. Deposit date: 2021-07-07 Release date: 2021-09-29 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Dramatic activation of an antibody by a single amino acid change in framework. Sci Rep, 11, 2021
6Q84	Crystal structure of RanGTP-Pdr6-eIF5A export complex Descriptor: Eukaryotic translation initiation factor 5A-1, GTP-binding nuclear protein Ran, GUANOSINE-5'-TRIPHOSPHATE, ... Authors: Aksu, M, Trakhanov, S, Vera-Rodriguez, A, Gorlich, D. Deposit date: 2018-12-14 Release date: 2019-05-01 Last modified: 2019-06-12 Method: X-RAY DIFFRACTION (3.7 Å) Cite: Structural basis for the nuclear import and export functions of the biportin Pdr6/Kap122. J.Cell Biol., 218, 2019
4UON	Crystal structure of C-terminal truncated (110-265) Aura virus capsid protease. Descriptor: CAPSID PROTEASE, GLYCEROL Authors: Aggarwal, M, Kumar, P, Tomar, S. Deposit date: 2014-06-05 Release date: 2014-06-18 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.81 Å) Cite: Trans-Protease Activity and Structural Insights Into the Active Form of the Alphavirus Capsid Protease. J.Virol., 88, 2014
7SAX	Structure of GldLM, the proton-powered motor that drives Type IX protein secretion and gliding motility in Sphingobacterium wenxiniae Descriptor: GldL, GldM Authors: Hennell James, R, Deme, J.C, Lea, S.M. Deposit date: 2021-09-23 Release date: 2022-03-23 Last modified: 2022-07-20 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structures of the Type IX Secretion/Gliding Motility Motor from across the Phylum Bacteroidetes. Mbio, 13, 2022
7SB2	Structure of the periplasmic domain of GldM from Capnocytophaga canimorsus Descriptor: GldM Authors: Hennell James, R, Deme, J.C, Lea, S.M. Deposit date: 2021-09-23 Release date: 2022-03-23 Last modified: 2022-07-20 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structures of the Type IX Secretion/Gliding Motility Motor from across the Phylum Bacteroidetes. Mbio, 13, 2022
7SAT	Structure of PorLM, the proton-powered motor that drives Type IX protein secretion Descriptor: Por secretion system protein porL/gldL, Por secretion system protein porM/gldM Authors: Hennell James, R, Deme, J.C, Lea, S.M. Deposit date: 2021-09-23 Release date: 2022-03-23 Last modified: 2022-07-20 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Structures of the Type IX Secretion/Gliding Motility Motor from across the Phylum Bacteroidetes. Mbio, 13, 2022
7SAZ	Structure of GldLM, the proton-powered motor that drives Type IX protein secretion and gliding motility in Capnocytophaga canimorsus Descriptor: GldL, GldM Authors: Hennell James, R, Deme, J.C, Lea, S.M. Deposit date: 2021-09-23 Release date: 2022-03-23 Last modified: 2022-07-20 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structures of the Type IX Secretion/Gliding Motility Motor from across the Phylum Bacteroidetes. Mbio, 13, 2022
7T8W	Structure of antibody 3G12 bound to Respiratory Syncytial Virus G central conserved domain mutant S177Q Descriptor: 3G12 Fab Heavy chain, 3G12 Fab Light chain, Mature secreted glycoprotein G Authors: Nunez Castrejon, A.M, O'Rourke, S.M, Kauvar, L.M, DuBois, R.M. Deposit date: 2021-12-17 Release date: 2022-02-09 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Structure-Based Design and Antigenic Validation of Respiratory Syncytial Virus G Immunogens. J.Virol., 96, 2022
8RJC	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1 Descriptor: 28S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Lewis, A.J.O, Hegde, R.S. Deposit date: 2023-12-20 Release date: 2024-01-24 Method: ELECTRON MICROSCOPY (2.90061 Å) Cite: Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1 To Be Published
8RJB	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4 Descriptor: 28S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Lewis, A.J.O, Hegde, R.S. Deposit date: 2023-12-20 Release date: 2024-01-24 Method: ELECTRON MICROSCOPY (2.69243 Å) Cite: Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4 To Be Published
8RJD	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2 Descriptor: 28S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Lewis, A.J.O, Hegde, R.S. Deposit date: 2023-12-20 Release date: 2024-01-24 Method: ELECTRON MICROSCOPY (2.78574 Å) Cite: Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2 To Be Published

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