PDB: 131 件ウェブページステータス検索Chemie searchBIRD

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8VPO	X-Ray Crystal Structure of TigE from Paramaledivibacter caminithermalis 分子名称: GLYCEROL, IRON/SULFUR CLUSTER, Radical SAM core domain-containing protein 著者 Grove, T.L, Lachowicz, J.C, Zizola, C. 登録日 2024-01-16 公開日 2024-02-07 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.66 Å) 主引用文献 Structural, Biochemical, and Bioinformatic Basis for Identifying Radical SAM Cyclopropyl Synthases. Acs Chem.Biol., 19, 2024
8VDW	X-Ray Crystal Structure of the biotin synthase from V. parvula 分子名称: 6-(5-METHYL-2-OXO-IMIDAZOLIDIN-4-YL)-HEXANOIC ACID, Biotin synthase, Fe4 H S5, ... 著者 Lachowicz, J.C, Grove, T.L. 登録日 2023-12-18 公開日 2024-01-24 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.807 Å) 主引用文献 Discovery of a Biotin Synthase That Utilizes an Auxiliary 4Fe-5S Cluster for Sulfur Insertion. J.Am.Chem.Soc., 146, 2024
8VCW	X-Ray Crystal Structure of the biotin synthase from B. obeum 分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 6-(5-METHYL-2-OXO-IMIDAZOLIDIN-4-YL)-HEXANOIC ACID, Biotin synthase, ... 著者 Lachowicz, J.C, Grove, T.L. 登録日 2023-12-14 公開日 2024-01-24 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.35 Å) 主引用文献 Discovery of a Biotin Synthase That Utilizes an Auxiliary 4Fe-5S Cluster for Sulfur Insertion. J.Am.Chem.Soc., 146, 2024
8QMN	[FeFe]-hydrogenase maturase HydE from T. maritima - dialysis experiment - empty structure 分子名称: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE, CHLORIDE ION, IRON/SULFUR CLUSTER, ... 著者 Omeiri, J, Martin, L, Usclat, A, Cherrier, M.V, Nicolet, Y. 登録日 2023-09-23 公開日 2023-11-22 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.48 Å) 主引用文献 Maturation of the [FeFe]-Hydrogenase: Direct Transfer of the ( kappa 3 -cysteinate)Fe II (CN)(CO) 2 Complex B from HydG to HydE. Angew.Chem.Int.Ed.Engl., 62, 2023
8QMM	M291I variant of the [FeFe]-hydrogenase maturase HydE from Thermotoga maritima 分子名称: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE, CHLORIDE ION, IRON/SULFUR CLUSTER, ... 著者 Omeiri, J, Martin, L, Usclat, A, Cherrier, M.V, Nicolet, Y. 登録日 2023-09-23 公開日 2023-11-22 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 Maturation of the [FeFe]-Hydrogenase: Direct Transfer of the ( kappa 3 -cysteinate)Fe II (CN)(CO) 2 Complex B from HydG to HydE. Angew.Chem.Int.Ed.Engl., 62, 2023
8QML	(2R,4R)-MeTDA bound HydE structure (control experiment) 分子名称: (2R,4R)-2-methyl-1,3-thiazolidine-2,4-dicarboxylic acid, 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE, CHLORIDE ION, ... 著者 Omeiri, J, Martin, L, Usclat, A, Cherrier, M.V, Nicolet, Y. 登録日 2023-09-22 公開日 2023-11-22 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Maturation of the [FeFe]-Hydrogenase: Direct Transfer of the ( kappa 3 -cysteinate)Fe II (CN)(CO) 2 Complex B from HydG to HydE. Angew.Chem.Int.Ed.Engl., 62, 2023
8QMK	Enzymatically-produced complex-B bound TmHydE structure 分子名称: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE, CARBON MONOXIDE, CHLORIDE ION, ... 著者 Omeiri, J, Martin, L, Usclat, A, Cherrier, M.V, Nicolet, Y. 登録日 2023-09-22 公開日 2023-11-22 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.3 Å) 主引用文献 Maturation of the [FeFe]-Hydrogenase: Direct Transfer of the ( kappa 3 -cysteinate)Fe II (CN)(CO) 2 Complex B from HydG to HydE. Angew.Chem.Int.Ed.Engl., 62, 2023
8PU0	Cryo-EM structure of human Elp123 in complex with tRNA, desulpho-CoA, 5'-deoxyadenosine and methionine 分子名称: 5'-DEOXYADENOSINE, DESULFO-COENZYME A, Elongator complex protein 1, ... 著者 Abbassi, N, Jaciuk, M, Lin, T.-Y, Glatt, S. 登録日 2023-07-16 公開日 2024-04-17 実験手法 ELECTRON MICROSCOPY (4.25 Å) 主引用文献 Cryo-EM structure of human Elp123 in complex with tRNA, desulpho-CoA, 5'-deoxyadenosine and methionine To Be Published
8PTZ	Cryo-EM structure of human Elp123 in complex with tRNA, S-ethyl-CoA, 5'-deoxyadenosine and methionine 分子名称: 5'-DEOXYADENOSINE, Elongator complex protein 1, Elongator complex protein 2, ... 著者 Abbassi, N, Jaciuk, M, Lin, T.-Y, Glatt, S. 登録日 2023-07-16 公開日 2024-04-17 実験手法 ELECTRON MICROSCOPY (3.35 Å) 主引用文献 Cryo-EM structure of human Elp123 in complex with tRNA, S-ethyl-CoA, 5'-deoxyadenosine and methionine To Be Published
8PTY	Cryo-EM structure of human Elp123 in complex with 5'-deoxyadenosine and methionine 分子名称: 5'-DEOXYADENOSINE, Elongator complex protein 1, Elongator complex protein 2, ... 著者 Abbassi, N, Jaciuk, M, Lin, T.-Y, Glatt, S. 登録日 2023-07-16 公開日 2024-04-17 実験手法 ELECTRON MICROSCOPY (3.58 Å) 主引用文献 Cryo-EM structure of human Elp123 in complex with 5'-deoxyadenosine and methionine To Be Published
8PTX	Cryo-EM structure of human Elp123 in complex with tRNA, acetyl-CoA, 5'-deoxyadenosine and methionine 分子名称: 5'-DEOXYADENOSINE, ACETYL COENZYME *A, Elongator complex protein 1, ... 著者 Abbassi, N, Jaciuk, M, Lin, T.-Y, Glatt, S. 登録日 2023-07-16 公開日 2024-04-17 実験手法 ELECTRON MICROSCOPY (2.87 Å) 主引用文献 Cryo-EM structure of human Elp123 in complex with tRNA, acetyl-CoA, 5'-deoxyadenosine and methionine To Be Published
8FSI	The structure of a crystallizable variant of E. coli pyruvate formate-lyase activating enzyme bound to SAM 分子名称: CHLORIDE ION, IRON/SULFUR CLUSTER, POTASSIUM ION, ... 著者 Moody, J.D, Galambas, A, Lawrence, C.M, Broderick, J.B. 登録日 2023-01-10 公開日 2023-05-24 最終更新日 2023-06-21 実験手法 X-RAY DIFFRACTION (1.46 Å) 主引用文献 Computational engineering of previously crystallized pyruvate formate-lyase activating enzyme reveals insights into SAM binding and reductive cleavage. J.Biol.Chem., 299, 2023
8FOL	The structure of a crystallizable variant of E. coli pyruvate formate-lyase activating enzyme bound to SAM, alternate crystal form 分子名称: CHLORIDE ION, IRON/SULFUR CLUSTER, POTASSIUM ION, ... 著者 Moody, J.D, Saxton, A.J, Galambas, A, Lawrence, C.M, Broderick, J.B. 登録日 2022-12-31 公開日 2023-05-24 最終更新日 2023-06-21 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 Computational engineering of previously crystallized pyruvate formate-lyase activating enzyme reveals insights into SAM binding and reductive cleavage. J.Biol.Chem., 299, 2023
8FO0	The structure of a crystallizable variant of E. coli pyruvate formate-lyase activating enzyme bound to a partially cleaved SAM molecule 分子名称: IRON/SULFUR CLUSTER, POTASSIUM ION, Pyruvate formate-lyase 1-activating enzyme, ... 著者 Moody, J.D, Saxton, A.J, Galambas, A, Lawrence, C.M, Broderick, J.B. 登録日 2022-12-29 公開日 2023-05-24 最終更新日 2023-06-21 実験手法 X-RAY DIFFRACTION (1.69 Å) 主引用文献 Computational engineering of previously crystallized pyruvate formate-lyase activating enzyme reveals insights into SAM binding and reductive cleavage. J.Biol.Chem., 299, 2023
8AVG	Cryo-EM structure of mouse Elp123 with bound SAM 分子名称: Elongator complex protein 1, Elongator complex protein 2, Elongator complex protein 3, ... 著者 Jaciuk, M, Scherf, D, Kaszuba, K, Gaik, M, Koscielniak, A, Krutyholowa, R, Rawski, M, Indyka, P, Biela, A, Dobosz, D, Lin, T.-Y, Abbassi, N, Hammermeister, A, Chramiec-Glabik, A, Kosinski, J, Schaffrath, R, Glatt, S. 登録日 2022-08-26 公開日 2022-12-07 最終更新日 2023-03-29 実験手法 ELECTRON MICROSCOPY (4.01 Å) 主引用文献 Cryo-EM structure of the fully assembled Elongator complex. Nucleic Acids Res., 51, 2023
8ASW	Cryo-EM structure of yeast Elp123 in complex with alanine tRNA 分子名称: 5'-DEOXYADENOSINE, Alanine tRNA, Elongator complex protein 1, ... 著者 Jaciuk, M, Scherf, D, Kaszuba, K, Gaik, M, Koscielniak, A, Krutyholowa, R, Rawski, M, Indyka, P, Biela, A, Dobosz, D, Lin, T.-Y, Abbassi, N, Hammermeister, A, Chramiec-Glabik, A, Kosinski, J, Schaffrath, R, Glatt, S. 登録日 2022-08-21 公開日 2022-12-07 最終更新日 2023-03-29 実験手法 ELECTRON MICROSCOPY (3.96 Å) 主引用文献 Cryo-EM structure of the fully assembled Elongator complex. Nucleic Acids Res., 51, 2023
8ASV	Cryo-EM structure of yeast Elongator complex 分子名称: Elongator complex protein 1, Elongator complex protein 2, Elongator complex protein 3, ... 著者 Jaciuk, M, Scherf, D, Kaszuba, K, Gaik, M, Koscielniak, A, Krutyholowa, R, Rawski, M, Indyka, P, Biela, A, Dobosz, D, Lin, T.-Y, Abbassi, N, Hammermeister, A, Chramiec-Glabik, A, Kosinski, J, Schaffrath, R, Glatt, S. 登録日 2022-08-21 公開日 2022-12-07 最終更新日 2023-03-29 実験手法 ELECTRON MICROSCOPY (4.35 Å) 主引用文献 Cryo-EM structure of the fully assembled Elongator complex. Nucleic Acids Res., 51, 2023
8AI6	Crystal structure of radical SAM epimerase EpeE D210A mutant from Bacillus subtilis with [4Fe-4S] clusters, S-adenosyl-L-homocysteine and persulfurated cysteine bound 分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, IRON/SULFUR CLUSTER, ... 著者 Polsinelli, I, Legrand, P, Fyfe, C.D, Benjdia, A, Berteau, O. 登録日 2022-07-25 公開日 2024-01-10 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Structural and mechanistic basis for RiPP epimerization by a radical SAM enzyme. Nat.Chem.Biol., 20, 2024
8AI5	Crystal structure of radical SAM epimerase EpeE C223A mutant from Bacillus subtilis with [4Fe-4S] clusters, S-adenosyl-L-homocysteine and RiPP peptide 6 bound 分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, IRON/SULFUR CLUSTER, ... 著者 Polsinelli, I, Fyfe, C.D, Legrand, P, Kubiak, X, Chavas, L.M.G, Berteau, O, Benjdia, A. 登録日 2022-07-25 公開日 2024-01-10 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Structural and mechanistic basis for RiPP epimerization by a radical SAM enzyme. Nat.Chem.Biol., 20, 2024
8AI4	Crystal structure of radical SAM epimerase EpeE C223A mutant from Bacillus subtilis with [4Fe-4S] clusters, S-adenosyl-L-homocysteine and RiPP peptide 5 bound 分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... 著者 Polsinelli, I, Fyfe, C.D, Legrand, P, Kubiak, X, Chavas, L.M.G, Berteau, O, Benjdia, A. 登録日 2022-07-25 公開日 2024-01-10 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Structural and mechanistic basis for RiPP epimerization by a radical SAM enzyme. Nat.Chem.Biol., 20, 2024
8AI3	Crystal structure of radical SAM epimerase EpeE C223A mutant from Bacillus subtilis with [4Fe-4S] clusters and S-adenosyl-L-methionine bound 分子名称: 1,2-ETHANEDIOL, GLYCEROL, IRON/SULFUR CLUSTER, ... 著者 Kubiak, X, Chavas, L.M.G, Legrand, P, Polsinelli, I, Fyfe, C.D, Benjdia, A, Berteau, O. 登録日 2022-07-25 公開日 2024-01-10 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structural and mechanistic basis for RiPP epimerization by a radical SAM enzyme. Nat.Chem.Biol., 20, 2024
8AI2	Crystal structure of radical SAM epimerase EpeE from Bacillus subtilis with [4Fe-4S] clusters, S-adenosyl-L-homocysteine and RiPP peptide 5 bound 分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, IRON/SULFUR CLUSTER, ... 著者 Polsinelli, I, Fyfe, C.D, Legrand, P, Kubiak, X, Chavas, L.M.G, Berteau, O, Benjdia, A. 登録日 2022-07-25 公開日 2024-01-10 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.393 Å) 主引用文献 Structural and mechanistic basis for RiPP epimerization by a radical SAM enzyme. Nat.Chem.Biol., 20, 2024
8AI1	Crystal structure of radical SAM epimerase EpeE from Bacillus subtilis with [4Fe-4S] clusters and S-adenosyl-L-homocysteine bound. 分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, IRON/SULFUR CLUSTER, ... 著者 Kubiak, X, Polsinelli, I, Chavas, L.M.G, Legrand, P, Fyfe, C.D, Benjdia, A, Berteau, O. 登録日 2022-07-25 公開日 2024-01-10 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structural and mechanistic basis for RiPP epimerization by a radical SAM enzyme. Nat.Chem.Biol., 20, 2024
7X0B	The structure of a Twitch Radical SAM Dehydrogenase SpeY 分子名称: 4Fe-4S cluster-binding domain-containing protein, CHLORIDE ION, GLYCEROL, ... 著者 Hou, X.L, Zhou, J.H. 登録日 2022-02-21 公開日 2022-12-28 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.02027535 Å) 主引用文献 Dioxane Bridge Formation during the Biosynthesis of Spectinomycin Involves a Twitch Radical S -Adenosyl Methionine Dehydrogenase That May Have Evolved from an Epimerase. J.Am.Chem.Soc., 144, 2022
7WZX	The structure of a Twitch Radical SAM Dehydrogenase SpeY 分子名称: (2~{S},4~{S},6~{R})-2-[(2~{S},3~{R},5~{S},6~{R})-3,5-bis(methylamino)-2,4,6-tris(oxidanyl)cyclohexyl]oxy-6-methyl-4-oxidanyl-oxan-3-one, 4Fe-4S cluster-binding domain-containing protein, GLYCEROL, ... 著者 Hou, X.L, Zhou, J.H. 登録日 2022-02-19 公開日 2022-12-28 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.980013 Å) 主引用文献 Dioxane Bridge Formation during the Biosynthesis of Spectinomycin Involves a Twitch Radical S -Adenosyl Methionine Dehydrogenase That May Have Evolved from an Epimerase. J.Am.Chem.Soc., 144, 2022

 

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