PDB: 190 件ウェブページステータス検索Chemie searchBIRD

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1N32	Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position at the a site with paromomycin 分子名称: 16S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ... 著者 Ogle, J.M, Murphy IV, F.V, Tarry, M.J, Ramakrishnan, V. 登録日 2002-10-25 公開日 2002-11-29 最終更新日 2019-11-20 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Selection of tRNA by the Ribosome Requires a Transition from an Open to a Closed Form Cell(Cambridge,Mass.), 111, 2002
6AZ3	Cryo-EM structure of of the large subunit of Leishmania ribosome bound to paromomycin 分子名称: 60S ribosomal protein L10, putative, 60S ribosomal protein L11 (L5, ... 著者 Shalev-Benami, M, Zhang, Y, Rozenberg, H, Nobe, Y, Taoka, M, Matzov, D, Zimmerman, E, Bashan, A, Isobe, T, Jaffe, C.L, Yonath, A, Skiniotis, G. 登録日 2017-09-09 公開日 2017-12-06 最終更新日 2022-04-13 実験手法 ELECTRON MICROSCOPY (2.5 Å) 主引用文献 Atomic resolution snapshot of Leishmania ribosome inhibition by the aminoglycoside paromomycin. Nat Commun, 8, 2017
6AZ1	Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin 分子名称: E-site tRNA, LACK1, MAGNESIUM ION, ... 著者 Shalev-Benami, M, Zhang, Y, Rozenberg, H, Matzov, D, Zimmerman, E, Bashan, A, Jaffe, C.L, Yonath, A, Skiniotis, G. 登録日 2017-09-09 公開日 2017-12-06 最終更新日 2019-07-03 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Atomic resolution snapshot of Leishmania ribosome inhibition by the aminoglycoside paromomycin. Nat Commun, 8, 2017
4TUA	Crystal structure of ASL-Thr bound to Codon ACC-A on the Ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Fagan, C.E, Dunham, C.M. 登録日 2014-06-24 公開日 2015-05-13 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 Structural insights into translational recoding by frameshift suppressor tRNASufJ. Rna, 20, 2014
6CAO	Structure of the ribosomal decoding complex at ambient temperature 分子名称: 16S Ribosomal RNA rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 DeMirci, H. 登録日 2018-01-31 公開日 2018-07-25 最終更新日 2019-04-17 実験手法 X-RAY DIFFRACTION (3.45 Å) 主引用文献 Structure of the 30S ribosomal decoding complex at ambient temperature. RNA, 24, 2018
4TUD	Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Fagan, C.E, Dunham, C.M. 登録日 2014-06-24 公開日 2015-05-13 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 Structural insights into translational recoding by frameshift suppressor tRNASufJ. Rna, 20, 2014
4TUB	Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Fagan, C.E, Dunham, C.M. 登録日 2014-06-24 公開日 2015-05-13 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 Structural insights into translational recoding by frameshift suppressor tRNASufJ. Rna, 20, 2014
1VVJ	Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Maehigashi, T, Dunkle, J.A, Dunham, C.M. 登録日 2013-05-24 公開日 2014-08-06 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (3.440001 Å) 主引用文献 Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops. Proc.Natl.Acad.Sci.USA, 111, 2014
6DTI	Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin 分子名称: 16s rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Cantara, W.A, DeMirci, H, Agris, P.F. 登録日 2018-06-16 公開日 2019-04-24 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.54 Å) 主引用文献 A Structural Basis for Restricted Codon Recognition Mediated by 2-thiocytidine in tRNA Containing a Wobble Position Inosine. J.Mol.Biol., 432, 2020
6E0D	X-ray structure of a complex of thaumatin with xylene cyanol 分子名称: (1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,6-dideoxy-alpha-D-glucopyranoside, L(+)-TARTARIC ACID, Thaumatin I 著者 McPherson, A. 登録日 2018-07-06 公開日 2018-09-19 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (2.24 Å) 主引用文献 Investigation into the binding of dyes within protein crystals. Acta Crystallogr F Struct Biol Commun, 74, 2018
1XMO	Crystal Structure of mnm5U34t6A37-tRNALysUUU Complexed with AAG-mRNA in the Decoding Center 分子名称: 16S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Murphy, F.V, Ramakrishnan, V, Malkiewicz, A, Agris, P.F. 登録日 2004-10-04 公開日 2004-12-14 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (3.25 Å) 主引用文献 The role of modifications in codon discrimination by tRNA(Lys)(UUU). Nat.Struct.Mol.Biol., 11, 2004
1XNQ	Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center 分子名称: 16S ribosomal RNA, Anticodon tRNA, MAGNESIUM ION, ... 著者 Murphy, F.V, Ramakrishnan, V. 登録日 2004-10-05 公開日 2004-12-14 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (3.05 Å) 主引用文献 Structure of a purine-purine wobble base pair in the decoding center of the ribosome. Nat.Struct.Mol.Biol., 11, 2004
1XMQ	Crystal Structure of t6A37-ASLLysUUU AAA-mRNA Bound to the Decoding Center 分子名称: 16s ribosomal RNA, 30S Ribosomal Protein S10, 30S Ribosomal Protein S11, ... 著者 Murphy, F.V, Ramakrishnan, V, Malkiewicz, A, Agris, P.F. 登録日 2004-10-04 公開日 2004-12-14 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 The role of modifications in codon discrimination by tRNA(Lys)(UUU). Nat.Struct.Mol.Biol., 11, 2004
1XNR	Crystal Structure of an Inosine-Cytosine Wobble Base Pair in the Context of the Decoding Center 分子名称: 16S Ribosomal RNA, 16S Ribosomal protein S10, 16S Ribosomal protein S11, ... 著者 Murphy, F.V, Ramakrishnan, V. 登録日 2004-10-05 公開日 2004-12-14 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structure of a purine-purine wobble base pair in the decoding center of the ribosome. Nat.Struct.Mol.Biol., 11, 2004
6FI6	Crystal structure of ERK2 in complex with an adenosine derivative 分子名称: (2~{R},3~{R},4~{S},5~{R})-2-(6-azanyl-8-diazanyl-purin-9-yl)-5-(hydroxymethyl)oxolane-3,4-diol, DIMETHYL SULFOXIDE, Mitogen-activated protein kinase 1, ... 著者 Gelin, M, Labesse, G. 登録日 2018-01-17 公開日 2019-01-30 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Crystal structure of ERK2 in complex with an adenosine derivative To be published
4V5Y	Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF). 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Borovinskaya, M.A, Pai, R.D, Zhang, W, Schuwirth, B.-S, Holton, J.M, Hirokawa, G, Kaji, H, Kaji, A, Cate, J.H.D. 登録日 2007-06-19 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (4.45 Å) 主引用文献 Structural basis for aminoglycoside inhibition of bacterial ribosome recycling. Nat.Struct.Mol.Biol., 14, 2007
4V8F	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin). 分子名称: 16S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ... 著者 Jenner, L, Demeshkina, N, Yusupov, M, Yusupova, G. 登録日 2011-12-07 公開日 2014-07-09 最終更新日 2019-07-03 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 A new understanding of the decoding principle on the ribosome. Nature, 484, 2012
4WRA	Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin. 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Rozov, A, Demeshkina, N, Yusupov, M, Yusupova, G. 登録日 2014-10-23 公開日 2015-06-10 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.05 Å) 主引用文献 Structural insights into the translational infidelity mechanism. Nat Commun, 6, 2015
4X66	Crystal Structure of 30S ribosomal subunit from Thermus thermophilus 分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Demirci, H, Chen, J, Choi, J, Soltis, M, Puglisi, J.D. 登録日 2014-12-06 公開日 2015-11-18 最終更新日 2019-12-25 実験手法 X-RAY DIFFRACTION (3.446 Å) 主引用文献 N(6)-methyladenosine in mRNA disrupts tRNA selection and translation-elongation dynamics. Nat.Struct.Mol.Biol., 23, 2016
4WT8	Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex 分子名称: 23S rRNA (2899-MER), 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Amunts, A, Fiedorczuk, K, Ramakrishnan, V. 登録日 2014-10-29 公開日 2015-01-21 最終更新日 2018-07-18 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Bactobolin A Binds to a Site on the 70S Ribosome Distinct from Previously Seen Antibiotics. J.Mol.Biol., 427, 2015
4WSD	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin. 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Rozov, A, Demeshkina, N, Yusupov, M, Yusupova, G. 登録日 2014-10-27 公開日 2015-06-10 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 Structural insights into the translational infidelity mechanism. Nat Commun, 6, 2015
4X64	Crystal Structure of 30S ribosomal subunit from Thermus thermophilus 分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Demirci, H, Chen, J, Choi, J, Soltis, M, Puglisi, J.D. 登録日 2014-12-06 公開日 2015-11-18 最終更新日 2019-12-25 実験手法 X-RAY DIFFRACTION (3.35 Å) 主引用文献 N(6)-methyladenosine in mRNA disrupts tRNA selection and translation-elongation dynamics. Nat.Struct.Mol.Biol., 23, 2016
4X62	Crystal Structure of 30S ribosomal subunit from Thermus thermophilus 分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Demirci, H, Chen, J, Choi, J, Soltis, M, Puglisi, J.D. 登録日 2014-12-06 公開日 2015-11-18 最終更新日 2019-12-25 実験手法 X-RAY DIFFRACTION (3.4492 Å) 主引用文献 N(6)-methyladenosine in mRNA disrupts tRNA selection and translation-elongation dynamics. Nat.Struct.Mol.Biol., 23, 2016
4X65	Crystal Structure of 30S ribosomal subunit from Thermus thermophilus 分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Demirci, H, Chen, J, Choi, J, Soltis, M, Puglisi, J.D. 登録日 2014-12-06 公開日 2015-11-18 最終更新日 2019-12-25 実験手法 X-RAY DIFFRACTION (3.345 Å) 主引用文献 N(6)-methyladenosine in mRNA disrupts tRNA selection and translation-elongation dynamics. Nat.Struct.Mol.Biol., 23, 2016
2UUB	Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUU-codon in the A-site and paromomycin. 分子名称: 16S Ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ... 著者 Weixlbaumer, A, Murphy, F.V, Dziergowska, A, Malkiewicz, A, Vendeix, F.A.P, Agris, P.F, Ramakrishnan, V. 登録日 2007-03-01 公開日 2007-05-15 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Mechanism for Expanding the Decoding Capacity of Transfer Rnas by Modification of Uridines Nat.Struct.Mol.Biol., 14, 2007

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