Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6QXA
DownloadVisualize
BU of 6qxa by Molmil
Structure of membrane bound pyrophosphatase from Thermotoga maritima in complex with imidodiphosphate and N-[(2-amino-6-benzothiazolyl)methyl]-1H-indole-2-carboxamide (ATC)
Descriptor: (4S,5S)-1,2-DITHIANE-4,5-DIOL, IMIDODIPHOSPHORIC ACID, K(+)-stimulated pyrophosphate-energized sodium pump, ...
Authors:Vidilaseris, K, Goldman, A.
Deposit date:2019-03-07
Release date:2019-04-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.41 Å)
Cite:Asymmetry in catalysis byThermotoga maritimamembrane-bound pyrophosphatase demonstrated by a nonphosphorus allosteric inhibitor.
Sci Adv, 5, 2019
6RIV
DownloadVisualize
BU of 6riv by Molmil
Crystal structure of Alopecurus myosuroides GSTF
Descriptor: GLYCEROL, Glutathione transferase, S-Hydroxy-Glutathione, ...
Authors:Papageorgiou, A.C, Poudel, N.
Deposit date:2019-04-25
Release date:2020-03-04
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Comparative structural and functional analysis of phi class glutathione transferases involved in multiple-herbicide resistance of grass weeds and crops.
Plant Physiol Biochem., 149, 2020
2ORF
DownloadVisualize
BU of 2orf by Molmil
Directing Macromolecular Conformation Through Halogen Bonds
Descriptor: DNA (5'-D(*CP*CP*GP*AP*TP*AP*CP*CP*GP*G)-3'), DNA (5'-D(*CP*CP*GP*GP*TP*AP*(BRU)P*CP*GP*G)-3'), SODIUM ION
Authors:Voth, A.R, Hays, F.A, Ho, P.S.
Deposit date:2007-02-02
Release date:2007-03-27
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Directing macromolecular conformation through halogen bonds.
Proc.Natl.Acad.Sci.Usa, 104, 2007
6JY3
DownloadVisualize
BU of 6jy3 by Molmil
Monomeric Form of Bovine Heart Cytochrome c Oxidase in the Fully Oxidized State
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (2S,3S,4S,5S,6R)-2-(2-decoxyethoxy)-6-(hydroxymethyl)oxane-3,4,5-triol, ...
Authors:Shinzawa-Itoh, K, Muramoto, K.
Deposit date:2019-04-26
Release date:2019-09-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Monomeric structure of an active form of bovine cytochromecoxidase.
Proc.Natl.Acad.Sci.USA, 116, 2019
6RLT
DownloadVisualize
BU of 6rlt by Molmil
Trypanosoma brucei Seryl-tRNA Synthetase in Complex with 5'-O-(N-(L-seryl)-Sulfamoyl)uridine
Descriptor: 5'-O-(N-(L-seryl)-Sulfamoyl)uridine, GLYCEROL, MALONATE ION, ...
Authors:Pang, L, De Graef, S, Strelkov, S.V, Weeks, S.D.
Deposit date:2019-05-02
Release date:2020-01-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Structural Insights into the Binding of Natural Pyrimidine-Based Inhibitors of Class II Aminoacyl-tRNA Synthetases.
Acs Chem.Biol., 15, 2020
6J6W
DownloadVisualize
BU of 6j6w by Molmil
Mutant K23N of heat shock factor 4-DBD
Descriptor: Heat shock factor protein 4, NITRATE ION, SODIUM ION
Authors:Xiao, Z.Y, Cui, L.W, Wang, S, Liu, W.
Deposit date:2019-01-16
Release date:2020-01-22
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.693 Å)
Cite:Structure of the mutant K23N of heat shock factor 4-DBD at 1.69 Angstroms resolution.
To Be Published
6B5E
DownloadVisualize
BU of 6b5e by Molmil
Mycobacterium tuberculosis RmlA in complex with dTDP-glucose
Descriptor: 1,2-ETHANEDIOL, 2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE, CHLORIDE ION, ...
Authors:Brown, H.A, Holden, H.M.
Deposit date:2017-09-29
Release date:2018-02-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:The structure of glucose-1-phosphate thymidylyltransferase from Mycobacterium tuberculosis reveals the location of an essential magnesium ion in the RmlA-type enzymes.
Protein Sci., 27, 2018
6JY4
DownloadVisualize
BU of 6jy4 by Molmil
Monomeric Form of Bovine Heart Cytochrome c Oxidase in the Fully Reduced State
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (2S,3S,4S,5S,6R)-2-(2-decoxyethoxy)-6-(hydroxymethyl)oxane-3,4,5-triol, ...
Authors:Shinzawa-Itoh, K, Muramoto, K.
Deposit date:2019-04-26
Release date:2019-09-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Monomeric structure of an active form of bovine cytochromecoxidase.
Proc.Natl.Acad.Sci.USA, 116, 2019
6RJN
DownloadVisualize
BU of 6rjn by Molmil
Crystal structure of a Fungal Catalase at 2.3 Angstroms
Descriptor: CHLORIDE ION, Catalase, DI(HYDROXYETHYL)ETHER, ...
Authors:Gomez, S, Navas-Yuste, S, Payne, A.M, Rivera, W, Lopez-Estepa, M, Brangbour, C, Fulla, D, Juanhuix, J, Fernandez, F.J, Vega, M.C.
Deposit date:2019-04-28
Release date:2020-03-04
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.295 Å)
Cite:Peroxisomal catalases from the yeasts Pichia pastoris and Kluyveromyces lactis as models for oxidative damage in higher eukaryotes.
Free Radic. Biol. Med., 141, 2019
6CNI
DownloadVisualize
BU of 6cni by Molmil
Crystal structure of H105A PGAM5 dimer
Descriptor: PHOSPHATE ION, SODIUM ION, Serine/threonine-protein phosphatase PGAM5, ...
Authors:Ruiz, K, Agnew, C, Jura, N.
Deposit date:2018-03-08
Release date:2019-02-13
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Functional role of PGAM5 multimeric assemblies and their polymerization into filaments.
Nat Commun, 10, 2019
5Z84
DownloadVisualize
BU of 5z84 by Molmil
The structure of azide-bound cytochrome c oxidase determined using the crystals exposed to 20 mM azide solution for 4 days
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
Authors:Shimada, A, Hatano, K, Tadehara, H, Tsukihara, T.
Deposit date:2018-01-31
Release date:2018-08-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:X-ray structural analyses of azide-bound cytochromecoxidases reveal that the H-pathway is critically important for the proton-pumping activity.
J. Biol. Chem., 293, 2018
4OKI
DownloadVisualize
BU of 4oki by Molmil
X-ray structure of the nucleotide-binding subdomain of the enoylreductase domain of PpsC from Mycobacterium tuberculosis
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Phthiocerol synthesis polyketide synthase type I PpsC, SODIUM ION
Authors:Faille, A, Mourey, L, Pedelacq, J.D.
Deposit date:2014-01-22
Release date:2015-08-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Insights into the catalytic mechanism of the DH domain of the Mycobacterium tuberculosis polyketide synthase PpsC and architecture of the beta-carbon processing domains
To be Published
5SV5
DownloadVisualize
BU of 5sv5 by Molmil
1.0 Angstrom Crystal Structure of pre-Peptidase C-terminal Domain of Collagenase from Bacillus anthracis.
Descriptor: Microbial collagenase, SODIUM ION
Authors:Minasov, G, Shuvalova, L, Kiryukhina, O, Dubrovska, I, Shatsman, S, Kwon, K, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2016-08-04
Release date:2016-08-17
Method:X-RAY DIFFRACTION (1 Å)
Cite:1.0 Angstrom Crystal Structure of pre-Peptidase C-terminal Domain of Collagenase from Bacillus anthracis.
To Be Published
5Z85
DownloadVisualize
BU of 5z85 by Molmil
The structure of azide-bound cytochrome c oxidase determined using the another batch crystals exposed to 20 mM azide solution for 2 days
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
Authors:Shimada, A, Hatano, K, Tadehara, H, Tsukihara, T.
Deposit date:2018-01-31
Release date:2018-08-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:X-ray structural analyses of azide-bound cytochromecoxidases reveal that the H-pathway is critically important for the proton-pumping activity.
J. Biol. Chem., 293, 2018
6SE8
DownloadVisualize
BU of 6se8 by Molmil
Cold-adapted beta-D-galactosidase from Arthrobacter sp. 32cB mutant E441Q
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ACETATE ION, Beta-galactosidase, ...
Authors:Rutkiewicz, M, Bujacz, A, Bujacz, G.
Deposit date:2019-07-29
Release date:2019-09-11
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.835 Å)
Cite:Active Site Architecture and Reaction Mechanism Determination of Cold Adapted beta-d-galactosidase fromArthrobactersp. 32cB.
Int J Mol Sci, 20, 2019
6K17
DownloadVisualize
BU of 6k17 by Molmil
Crystal structure of EXD2 exonuclease domain
Descriptor: Exonuclease 3'-5' domain-containing protein 2, SODIUM ION
Authors:Park, J, Lee, C.
Deposit date:2019-05-10
Release date:2019-05-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.602 Å)
Cite:The structure of human EXD2 reveals a chimeric 3' to 5' exonuclease domain that discriminates substrates via metal coordination.
Nucleic Acids Res., 47, 2019
6LZH
DownloadVisualize
BU of 6lzh by Molmil
Crystal structure of Alpha/beta hydrolase GrgF from Penicillium sp. sh18
Descriptor: GrgF, SODIUM ION
Authors:Wang, H, Yu, J, Wang, W.G, Matsuda, Y, Yao, M.
Deposit date:2020-02-19
Release date:2020-06-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Molecular Basis for the Biosynthesis of an Unusual Chain-Fused Polyketide, Gregatin A.
J.Am.Chem.Soc., 142, 2020
5T2T
DownloadVisualize
BU of 5t2t by Molmil
Crystal structure of Lymphocytic choriomeningitis mammarenavirus endonuclease bound to compound L742001
Descriptor: (2Z)-4-[1-benzyl-4-(4-chlorobenzyl)piperidin-4-yl]-2-hydroxy-4-oxobut-2-enoic acid, CHLORIDE ION, GLYCEROL, ...
Authors:Saez-Ayala, M, Yekwa, E.L, Canard, B, Alvarez, K, Ferron, F.
Deposit date:2016-08-24
Release date:2017-09-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.967 Å)
Cite:Crystal structures ofLymphocytic choriomeningitis virusendonuclease domain complexed with diketo-acid ligands.
IUCrJ, 5, 2018
6LQX
DownloadVisualize
BU of 6lqx by Molmil
Crystal structure of the CBP bromodomain in complex with small molecule LC-CPin7
Descriptor: (1~{S},6~{R})-6-[(1-methoxycarbonyl-3,4-dihydro-2~{H}-quinolin-6-yl)carbamoyl]cyclohex-3-ene-1-carboxylic acid, CREB-binding protein, SODIUM ION
Authors:Chen, Y, Zhang, F, Sun, Z, Bi, X, Luo, C.
Deposit date:2020-01-14
Release date:2021-01-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:Design, synthesis and biological evaluation of novel small molecule inhibitor of the CBP bromodomain with possible anti-leukemia effects
To Be Published
2NMX
DownloadVisualize
BU of 2nmx by Molmil
Structure of inhibitor binding to Carbonic Anhydrase I
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Carbonic anhydrase 1, N-{2-[4-(AMINOSULFONYL)PHENYL]ETHYL}ACETAMIDE, ...
Authors:Christianson, D.W, Jude, K.M.
Deposit date:2006-10-23
Release date:2007-04-24
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural Analysis of Charge Discrimination in the Binding of Inhibitors to Human Carbonic Anhydrases I and II
J.Am.Chem.Soc., 129, 2007
6MFM
DownloadVisualize
BU of 6mfm by Molmil
Structure of thiamine-monophosphate kinase from Acinetobacter baumannii in complex with adenosine diphosphate (ADP) and thiamine diphosphate (TPP), orthorhombic crystal form
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, SODIUM ION, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2018-09-11
Release date:2018-09-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of thiamine monophosphate kinase from Acinetobacter baumannii in complex with substrates and products.
Sci Rep, 9, 2019
6M38
DownloadVisualize
BU of 6m38 by Molmil
X-ray structure of a Drosophila dopamine transporter with subsiteB mutations (D121G/S426M) in S-duloxetine bound form
Descriptor: (3S)-N-methyl-3-(naphthalen-1-yloxy)-3-(thiophen-2-yl)propan-1-amine, Antibody fragment 9D5 heavy chain, Antibody fragment 9D5 light chain, ...
Authors:Shabareesh, P, Mallela, A.K, Joseph, D, Penmatsa, A.
Deposit date:2020-03-02
Release date:2021-02-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.001 Å)
Cite:Structural basis of norepinephrine recognition and transport inhibition in neurotransmitter transporters.
Nat Commun, 12, 2021
6M0Z
DownloadVisualize
BU of 6m0z by Molmil
X-ray structure of Drosophila dopamine transporter with NET-like mutations (D121G/S426M/F471L) in L-norepinephrine bound form
Descriptor: Antibody fragment (Fab) 9D5 Light chain, Antibody fragment (Fab) 9D5 heavy chain, CHLORIDE ION, ...
Authors:Shabareesh, P, Mallela, A.K, Joseph, D, Penmatsa, A.
Deposit date:2020-02-24
Release date:2021-02-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:Structural basis of norepinephrine recognition and transport inhibition in neurotransmitter transporters.
Nat Commun, 12, 2021
5T9X
DownloadVisualize
BU of 5t9x by Molmil
Crystal structure of BuGH16Bwt
Descriptor: Glycoside Hydrolase, IMIDAZOLE, SODIUM ION
Authors:Pluvinage, B, Boraston, A.B.
Deposit date:2016-09-09
Release date:2017-09-13
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Molecular basis of an agarose metabolic pathway acquired by a human intestinal symbiont.
Nat Commun, 9, 2018
5TJ7
DownloadVisualize
BU of 5tj7 by Molmil
Structure of WWP2 WW2-2,3-linker-HECT aa 334-398 linked to 485-865
Descriptor: CHLORIDE ION, NEDD4-like E3 ubiquitin-protein ligase WWP2, SODIUM ION, ...
Authors:Chen, Z, Gabelli, S.B.
Deposit date:2016-10-03
Release date:2017-05-31
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A Tunable Brake for HECT Ubiquitin Ligases.
Mol. Cell, 66, 2017

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon