6CNI

Crystal structure of H105A PGAM5 dimer

Summary for 6CNI

• Entry DOI: 10.2210/pdb6cni/pdb
• Descriptor: Serine/threonine-protein phosphatase PGAM5, mitochondrial, SODIUM ION, PHOSPHATE ION, ... (4 entities in total)
• Functional Keywords: phosphatase, mitophagy, signaling protein
• Biological source: Homo sapiens (Human)
• Total number of polymer chains: 2
• Total formula weight: 51143.65

Authors

Ruiz, K.,Agnew, C.,Jura, N. (deposition date: 2018-03-08, release date: 2019-02-13, Last modification date: 2023-10-04)

Primary citation

Ruiz, K.,Thaker, T.M.,Agnew, C.,Miller-Vedam, L.,Trenker, R.,Herrera, C.,Ingaramo, M.,Toso, D.,Frost, A.,Jura, N.
Functional role of PGAM5 multimeric assemblies and their polymerization into filaments.
Nat Commun, 10:531-531, 2019

PubMed Abstract: PGAM5 is a mitochondrial protein phosphatase whose genetic ablation in mice results in mitochondria-related disorders, including neurodegeneration. Functions of PGAM5 include regulation of mitophagy, cell death, metabolism and aging. However, mechanisms regulating PGAM5 activation and signaling are poorly understood. Using electron cryo-microscopy, we show that PGAM5 forms dodecamers in solution. We also present a crystal structure of PGAM5 that reveals the determinants of dodecamer formation. Furthermore, we observe PGAM5 dodecamer assembly into filaments both in vitro and in cells. We find that PGAM5 oligomerization into a dodecamer is not only essential for catalytic activation, but this form also plays a structural role on mitochondrial membranes, which is independent of phosphatase activity. Together, these findings suggest that modulation of the oligomerization of PGAM5 may be a regulatory switch of potential therapeutic interest.

PubMed: 30705304
DOI: 10.1038/s41467-019-08393-w

Experimental method

X-RAY DIFFRACTION (1.7 Å)