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3SQ4	RB69 DNA Polymerase Ternary Complex with dTTP Opposite 2AP (GC rich sequence) Descriptor: 5'-D(*CP*GP*CP*GP*CP*GP*GP*CP*GP*GP*CP*GP*(2DA))-3', 5'-D(P*CP*(2PR)P*TP*CP*GP*CP*CP*GP*CP*CP*GP*CP*GP*CP*GP*G)-3', CALCIUM ION, ... Authors: Xia, S, Konigsberg, W.H, Wang, J. Deposit date: 2011-07-04 Release date: 2011-11-09 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.23 Å) Cite: Structure of the 2-Aminopurine-Cytosine Base Pair Formed in the Polymerase Active Site of the RB69 Y567A-DNA Polymerase. Biochemistry, 50, 2011
6JEZ	Covalent labeling of rVDR-LBD by turn-on fluorescent probe mediated by conjugate addition and cyclization Descriptor: (1R,3R)-5-(2-((1R,3aS,7aR,E)-1-((R)-6-hydroxy-6-methylheptan-2-yl)-7a-methyloctahydro-4H-inden-4-ylidene)ethylidene)-2- methylenecyclohexane-1,3-diol, 7-(diethylamino)chromen-2-one, Mediator of RNA polymerase II transcription subunit 1, ... Authors: Kojima, H, Yamamoto, K, Itoh, T. Deposit date: 2019-02-07 Release date: 2020-02-12 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Cyclization Reaction-Based Turn-on Probe for Covalent Labeling of Target Proteins. Cell Chem Biol, 27, 2020
7VQP	Vitamin D receptor complexed with a lithocholic acid derivative Descriptor: 3-((R)-4-((3R,5R,8R,9S,10S,13R,14S,17R)-3-(2-hydroxy-2-methylpropyl)-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanamido)propanoic acid, Mediator of RNA polymerase II transcription subunit 1, Vitamin D3 receptor Authors: Kato, K, Numoto, N, Kagechika, H, Tanatani, A, Ito, N. Deposit date: 2021-10-20 Release date: 2022-03-09 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.94 Å) Cite: Lithocholic Acid Amides as Potent Vitamin D Receptor Agonists. Biomolecules, 12, 2022
6K5O	Development of Novel Lithocholic Acid Derivatives as Vitamin D Receptor Agonists Descriptor: (4~{R})-4-[(3~{R},5~{R},8~{R},9~{S},10~{S},13~{R},14~{S},17~{R})-10,13-dimethyl-3-methylsulfonyloxy-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1~{H}-cyclopenta[a]phenanthren-17-yl]pentanoic acid, Mediator of RNA polymerase II transcription subunit 1, Vitamin D3 receptor Authors: Masuno, H, Kagechika, H, Ito, N. Deposit date: 2019-05-29 Release date: 2019-07-24 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Development of novel lithocholic acid derivatives as vitamin D receptor agonists. Bioorg.Med.Chem., 27, 2019
7EWF	Selenomethionine-substituted structure of S. cerevisiae Csn12 in complex with Thp3 and Sem1 Descriptor: 26S proteasome complex subunit SEM1, Cop9 signalosome complex subunit 12, Protein THP3 Authors: Kuang, Z, Niu, L. Deposit date: 2021-05-25 Release date: 2022-09-07 Last modified: 2023-04-05 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Structural assembly of the nucleic-acid-binding Thp3-Csn12-Sem1 complex functioning in mRNA splicing. Nucleic Acids Res., 50, 2022
7EWM	Native crystal structure of S. cerevisiae Csn12 in complex with Thp3 and Sem1 Descriptor: 26S proteasome complex subunit SEM1, Cop9 signalosome complex subunit 12, Protein THP3 Authors: Kuang, Z, Niu, L. Deposit date: 2021-05-25 Release date: 2022-09-07 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structural assembly of the nucleic-acid-binding Thp3-Csn12-Sem1 complex functioning in mRNA splicing. Nucleic Acids Res., 50, 2022
1HEI	STRUCTURE OF THE HEPATITIS C VIRUS RNA HELICASE DOMAIN Descriptor: CALCIUM ION, HCV HELICASE Authors: Yao, N, Weber, P. Deposit date: 1997-03-31 Release date: 1998-10-07 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structure of the hepatitis C virus RNA helicase domain. Nat.Struct.Biol., 4, 1997
2M14	NMR structure of the complex between the PH domain of the Tfb1 subunit from TFIIH and Rad4 Descriptor: DNA repair protein RAD4, RNA polymerase II transcription factor B subunit 1 Authors: Lafrance-Vanasse, J, Arseneault, G, Cappadocia, L, Legault, P, Omichinski, J.G. Deposit date: 2012-11-16 Release date: 2013-01-23 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structural and functional evidence that Rad4 competes with Rad2 for binding to the Tfb1 subunit of TFIIH in NER. Nucleic Acids Res., 41, 2013
6FDP	NMR structure of the second TPR domain of the human RPAP3 protein in complex with HSP90 peptide DTSRMEEVD Descriptor: Heat shock protein HSP 90-alpha, RNA polymerase II-associated protein 3 Authors: Quinternet, M, Chagot, M.E, Manival, X. Deposit date: 2017-12-26 Release date: 2018-08-01 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: Deep Structural Analysis of RPAP3 and PIH1D1, Two Components of the HSP90 Co-chaperone R2TP Complex. Structure, 26, 2018
8OQI	Cryo-EM structure of the wild-type alpha-synuclein fibril. Descriptor: Alpha-synuclein Authors: Pesch, V, Reithofer, S, Ma, L, Flores-Fernandez, J.M, Oezduezenciler, P, Busch, Y, Lien, Y, Rudtke, O, Frieg, B, Schroeder, G.F, Wille, H, Tamgueney, G. Deposit date: 2023-04-12 Release date: 2024-03-13 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Vaccination with structurally adapted fungal protein fibrils induces immunity to Parkinson's disease. Brain, 147, 2024
6FDT	NMR structure of the second TPR domain of the human RPAP3 protein in complex with HSP70 peptide SGPTIEEVD Descriptor: Heat shock 70 kDa protein 1B, RNA polymerase II-associated protein 3 Authors: Quinternet, M, Chagot, M.E, Manival, X. Deposit date: 2017-12-26 Release date: 2018-08-01 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: Deep Structural Analysis of RPAP3 and PIH1D1, Two Components of the HSP90 Co-chaperone R2TP Complex. Structure, 26, 2018
1HUO	CRYSTAL STRUCTURE OF DNA POLYMERASE BETA COMPLEXED WITH DNA AND CR-TMPPCP Descriptor: 5'-D(*AP*AP*TP*AP*GP*GP*CP*GP*TP*CP*G)-3', 5'-D(P*CP*GP*AP*CP*GP*CP*C)-3', CHROMIUM ION, ... Authors: Arndt, J.W, Gong, W, Zhong, X, Showalter, A.K, Liu, J, Lin, Z, Paxson, C, Tsai, M.-D, Chan, M.K. Deposit date: 2001-01-04 Release date: 2001-04-23 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Insight into the catalytic mechanism of DNA polymerase beta: structures of intermediate complexes. Biochemistry, 40, 2001
1HUZ	CRYSTAL STRUCTURE OF DNA POLYMERASE COMPLEXED WITH DNA AND CR-PCP Descriptor: 5'-D(*AP*AP*TP*AP*GP*GP*CP*GP*TP*CP*G)-3', 5'-D(P*CP*GP*AP*CP*GP*CP*CP*T)-3', CHROMIUM ION, ... Authors: Arndt, J.W, Gong, W, Zhong, X, Showalter, A.K, Liu, J, Lin, Z, Paxson, C, Tsai, M.-D, Chan, M.K. Deposit date: 2001-01-04 Release date: 2001-04-23 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Insight into the catalytic mechanism of DNA polymerase beta: structures of intermediate complexes. Biochemistry, 40, 2001
3FTM	Class II ligase ribozyme product-template duplex, structure 1 Descriptor: 5'-R(*CP*CP*AP*GP*UP*CP*GP*GP*AP*AP*CP*A)-3', 5'-R(*GP*UP*GP*UP*GP*AP*GP*GP*CP*UP*G)-3', MAGNESIUM ION, ... Authors: Pitt, J.N, Ferre-D'Amare, A.R. Deposit date: 2009-01-13 Release date: 2009-02-24 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structure-guided engineering of the regioselectivity of RNA ligase ribozymes. J.Am.Chem.Soc., 131, 2009
2LOX	NMR structure of the complex between the PH domain of the Tfb1 subunit from TFIIH and Rad2 Descriptor: DNA repair protein RAD2, RNA polymerase II transcription factor B subunit 1 Authors: Lafrance-Vanasse, J, Legault, P, Omichinski, J. Deposit date: 2012-01-27 Release date: 2012-02-15 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structural and functional characterization of interactions involving the Tfb1 subunit of TFIIH and the NER factor Rad2. Nucleic Acids Res., 40, 2012
8V7F	Human DNA polymerase eta-DNA-araC-ended primer-dAMPNPP ternary complex with Mn2+ Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T*())-3'), DNA (5'-D(*CP*AP*TP*GP*AP*TP*GP*AP*CP*GP*CP*T)-3'), ... Authors: Chang, C, Gao, Y. Deposit date: 2023-12-04 Release date: 2024-05-15 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Human DNA polymerase eta-DNA-araC-ended primer-dAMPNPP ternary complex with Mn2+ To Be Published
7AQK	Model of the actin filament Arp2/3 complex branch junction in cells Descriptor: Actin, alpha skeletal muscle, ACTA1, ... Authors: Faessler, F, Dimchev, G, Hodirnau, V.V, Wan, W, Schur, F.K.M. Deposit date: 2020-10-22 Release date: 2020-12-02 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (9 Å) Cite: Cryo-electron tomography structure of Arp2/3 complex in cells reveals new insights into the branch junction. Nat Commun, 11, 2020
5JW9	The Crystal Structure of ELL2 Oclludin Domain and AFF4 peptide Descriptor: AF4/FMR2 family member 4, RNA polymerase II elongation factor ELL2 Authors: Qi, S, Hurley, J.H. Deposit date: 2016-05-11 Release date: 2017-02-08 Method: X-RAY DIFFRACTION (2.003 Å) Cite: Structural basis for ELL2 and AFF4 activation of HIV-1 proviral transcription. Nat Commun, 8, 2017
4A8J	Crystal Structure of the Elongator subcomplex Elp456 Descriptor: Elongator complex protein 4, Elongator complex protein 5, Elongator complex protein 6 Authors: Glatt, S, Mueller, C.W. Deposit date: 2011-11-21 Release date: 2012-02-22 Last modified: 2024-09-11 Method: X-RAY DIFFRACTION (2.1 Å) Cite: The Elongator Subcomplex Elp456 is a Hexameric Reca-Like ATPase. Nat.Struct.Mol.Biol., 19, 2012
3FS0	Class II ligase ribozyme product-template duplex, structure 2 Descriptor: 5'-R(*CP*CP*AP*GP*UP*CP*GP*GP*AP*AP*C)-3', 5'-R(*GP*GP*UP*GP*AP*GP*GP*CP*UP*G)-3', MAGNESIUM ION Authors: Pitt, J.N, Ferre-D'Amare, A.R. Deposit date: 2009-01-08 Release date: 2009-02-24 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structure-guided engineering of the regioselectivity of RNA ligase ribozymes. J.Am.Chem.Soc., 131, 2009
6ALY	Solution structure of yeast Med15 ABD2 residues 277-368 Descriptor: Mediator of RNA polymerase II transcription subunit 15 Authors: Tuttle, L.M, Pacheco, D, Warfield, L, Hahn, S, Klevit, R.E. Deposit date: 2017-08-08 Release date: 2018-03-21 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Gcn4-Mediator Specificity Is Mediated by a Large and Dynamic Fuzzy Protein-Protein Complex. Cell Rep, 22, 2018
7XR3	3.4 Angstrom cryoEM D5 reconstruction of mud crab reovirus Descriptor: VP1, VP3 Authors: Zhang, Q.F, Gao, Y.Z. Deposit date: 2022-05-09 Release date: 2023-04-19 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: The structure of a 12-segmented dsRNA reovirus: New insights into capsid stabilization and organization. Plos Pathog., 19, 2023
7XR2	3.1 Angstrom cryoEM icosahedral reconstruction of mud crab reovirus Descriptor: VP11, VP12, VP3 Authors: Zhang, Q, Gao, Y. Deposit date: 2022-05-09 Release date: 2023-04-19 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: The structure of a 12-segmented dsRNA reovirus: New insights into capsid stabilization and organization. Plos Pathog., 19, 2023
2ZMI	Crystal Structure of Rat Vitamin D Receptor Bound to Adamantyl Vitamin D Analogs: Structural Basis for Vitamin D Receptor Antagonism and/or Partial Agonism Descriptor: (1R,3R,7E,17beta)-17-{(1S,2E,5R)-5-hydroxy-1-methyl-5-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]pent-2-en-1-yl}-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol, 1,2-ETHANEDIOL, FORMIC ACID, ... Authors: Nakabayashi, M, Yamada, S, Tanaka, T, Igarashi, M, Yoshimoto, N, Ikura, T, Ito, N, Makishima, M, Tokiwa, H, DeLuca, H.F, Shimizu, M. Deposit date: 2008-04-19 Release date: 2008-09-02 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Crystal structures of rat vitamin d receptor bound to adamantyl vitamin d analogs: structural basis for vitamin d receptor antagonism and partial agonism J.Med.Chem., 51, 2008
2DB9	Solution structure of the plus-3 domain of human KIAA0252 protein Descriptor: Paf1/RNA polymerase II complex component Authors: Yoneyama, M, Kigawa, T, Tochio, N, Nameki, N, Koshiba, S, Inoue, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2005-12-15 Release date: 2006-06-15 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of the plus-3 domain of human KIAA0252 protein To be Published

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