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4U7U
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BU of 4u7u by Molmil
Crystal structure of RNA-guided immune Cascade complex from E.coli
Descriptor: CRISPR system Cascade subunit CasA, CRISPR system Cascade subunit CasB, CRISPR system Cascade subunit CasC, ...
Authors:Zhao, H, Sheng, G, Wang, J, Wang, M, Bunkoczi, G, Gong, W, Wei, Z, Wang, Y.
Deposit date:2014-07-31
Release date:2014-08-27
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.003 Å)
Cite:Crystal structure of the RNA-guided immune surveillance Cascade complex in Escherichia coli
Nature, 515, 2014
8SFJ
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BU of 8sfj by Molmil
WT CRISPR-Cas12a with a 10bp R-loop
Descriptor: CRISPR-associated endonuclease Cas12a, DNA (5'-D(P*CP*AP*CP*TP*TP*AP*TP*CP*AP*CP*TP*AP*AP*AP*AP*GP*AP*TP*CP*GP*GP*AP*AP*G)-3'), DNA (5'-D(P*CP*TP*TP*CP*CP*GP*AP*TP*CP*TP*TP*TP*TP*AP*GP*TP*GP*AP*T)-3'), ...
Authors:Strohkendl, I, Taylor, D.W.
Deposit date:2023-04-11
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:WT CRISPR-Cas12a with a 10bp R-loop
To Be Published
8SFQ
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BU of 8sfq by Molmil
WT CRISPR-Cas12a post nontarget strand-cleavage with the the RuvC active site exposed.
Descriptor: CRISPR-associated endonuclease Cas12a, DNA (34-MER), DNA (5'-D(P*CP*TP*TP*CP*CP*GP*AP*TP*CP*TP*TP*TP*TP*AP*GP*TP*GP*AP*T)-3'), ...
Authors:Strohkendl, I, Taylor, D.W.
Deposit date:2023-04-11
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:WT CRISPR-Cas12a post nontarget strand-cleavage with the the RuvC active site exposed.
To Be Published
8SFP
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BU of 8sfp by Molmil
WT CRISPR-Cas12a with the target strand in the RuvC active site.
Descriptor: CRISPR-associated endonuclease Cas12a, DNA (40-MER), DNA (5'-D(P*CP*TP*TP*CP*CP*GP*AP*TP*CP*TP*TP*TP*TP*AP*GP*TP*GP*AP*TP*A)-3'), ...
Authors:Strohkendl, I, Taylor, D.W.
Deposit date:2023-04-11
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:WT CRISPR-Cas12a with the target strand in the RuvC active site.
To Be Published
8SFI
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BU of 8sfi by Molmil
WT CRISPR-Cas12a with a 8bp R-loop
Descriptor: CRISPR-associated endonuclease Cas12a, DNA (5'-D(P*CP*TP*TP*AP*TP*CP*AP*CP*TP*AP*AP*AP*AP*GP*AP*TP*CP*GP*GP*AP*AP*G)-3'), DNA (5'-D(P*CP*TP*TP*CP*CP*GP*AP*TP*CP*TP*TP*TP*TP*AP*GP*TP*GP*AP*TP*A)-3'), ...
Authors:Strohkendl, I, Taylor, D.W.
Deposit date:2023-04-11
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:WT CRISPR-Cas12a with a 8bp R-loop
To Be Published
8SFH
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BU of 8sfh by Molmil
WT CRISPR-Cas12a with a 5bp R-loop
Descriptor: CRISPR-associated endonuclease Cas12a, DNA (32-MER), RNA (27-MER)
Authors:Strohkendl, I, Taylor, D.W.
Deposit date:2023-04-11
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:WT CRISPR-Cas12a with a 5bp R-loop
To Be Published
8SFR
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BU of 8sfr by Molmil
WT CRISPR-Cas12a post nontarget strand cleavage.
Descriptor: CRISPR-associated endonuclease Cas12a, DNA (34-MER), DNA (5'-D(P*CP*TP*TP*CP*CP*GP*AP*TP*CP*TP*TP*TP*TP*AP*GP*TP*GP*AP*T)-3'), ...
Authors:Strohkendl, I, Taylor, D.W.
Deposit date:2023-04-11
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:WT CRISPR-Cas12a post nontarget strand cleavage.
To Be Published
9DQS
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BU of 9dqs by Molmil
Structure of Tudor domain from Mycobacterium smegmatis UvrD1
Descriptor: ATP-dependent DNA helicase
Authors:Warren, G.M, Shuman, S.
Deposit date:2024-09-24
Release date:2024-10-16
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Structure of Tudor domain from Mycobacterium smegmatis UvrD1
To Be Published
5OAY
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BU of 5oay by Molmil
M. tuberculosis [4Fe-4S] protein WhiB1 is a four-helix bundle that forms a NO-sensitive complex with sigmaA and regulates the major virulence factor ESX-1
Descriptor: IRON/SULFUR CLUSTER, Transcriptional regulator WhiB1
Authors:Williamson, M.P, Green, J, Hounslow, A.M.
Deposit date:2017-06-25
Release date:2018-01-03
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure of a Wbl protein and implications for NO sensing by M. tuberculosis.
Nat Commun, 8, 2017
6ODM
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BU of 6odm by Molmil
Herpes simplex virus type 1 (HSV-1) portal vertex-adjacent capsid/CATC, asymmetric unit
Descriptor: Capsid vertex component 1, Capsid vertex component 2, Large tegument protein deneddylase, ...
Authors:Liu, Y.T, Jih, J, Dai, X.H, Bi, G.Q, Zhou, Z.H.
Deposit date:2019-03-26
Release date:2019-06-19
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Cryo-EM structures of herpes simplex virus type 1 portal vertex and packaged genome.
Nature, 570, 2019
1D8B
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BU of 1d8b by Molmil
NMR STRUCTURE OF THE HRDC DOMAIN FROM SACCHAROMYCES CEREVISIAE RECQ HELICASE
Descriptor: SGS1 RECQ HELICASE
Authors:Liu, Z, Macias, M.J, Bottomley, M.J, Stier, G, Linge, J.P, Nilges, M, Bork, P, Sattler, M.
Deposit date:1999-10-21
Release date:2000-01-10
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:The three-dimensional structure of the HRDC domain and implications for the Werner and Bloom syndrome proteins.
Structure Fold.Des., 7, 1999
4XYO
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BU of 4xyo by Molmil
Structure of AgrA LytTR domain
Descriptor: 1,2-ETHANEDIOL, Accessory gene regulator A
Authors:Gopal, B, Rajasree, K.
Deposit date:2015-02-02
Release date:2016-04-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Conformational features of theStaphylococcus aureusAgrA-promoter interactions rationalize quorum-sensing triggered gene expression.
Biochem Biophys Rep, 6, 2016
6UH5
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BU of 6uh5 by Molmil
Structural basis of COMPASS eCM recognition of the H2Bub nucleosome
Descriptor: Bre2, DNA (146-MER), H3 N-terminus, ...
Authors:Hsu, P.L, Shi, H, Zheng, N.
Deposit date:2019-09-26
Release date:2019-11-20
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structural Basis of H2B Ubiquitination-Dependent H3K4 Methylation by COMPASS.
Mol.Cell, 76, 2019
2N5G
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BU of 2n5g by Molmil
NMR structure of KorA, a plasmid-encoded, global transcription regulator KorA
Descriptor: TrfB transcriptional repressor protein
Authors:Rajasekar, K.V, Lovering, A.L, Dancea, F.V, Scott, D.J, Harris, S, Bingle, L.E, Roessle, M, Thomas, C.M, Hyde, E.I, White, S.A.
Deposit date:2015-07-17
Release date:2016-07-20
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Flexibility of KorA, a plasmid-encoded, global transcription regulator, in the presence and the absence of its operator.
Nucleic Acids Res., 44, 2016
2KHL
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BU of 2khl by Molmil
Refined solution structure of Methanosarcina thermophila protein MC1
Descriptor: Chromosomal protein MC1
Authors:Paquet, F, Meudal, H, Culard, F, Lancelot, G.
Deposit date:2009-04-08
Release date:2009-05-12
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Refined solution structure and backbone dynamics of the archaeal MC1 protein
Febs J., 277, 2010
4YG1
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BU of 4yg1 by Molmil
HipB-O1-O2 complex/P21212 crystal form
Descriptor: Antitoxin HipB, DNA (48-MER)
Authors:Schumacher, M.A.
Deposit date:2015-02-25
Release date:2015-07-29
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:HipBA-promoter structures reveal the basis of heritable multidrug tolerance.
Nature, 524, 2015
5MSN
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BU of 5msn by Molmil
Structure of the Dcc1 Protein
Descriptor: DCC1 protein
Authors:Wade, B.O, Singleton, M.R.
Deposit date:2017-01-05
Release date:2017-02-15
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.002 Å)
Cite:Structural studies of RFC(C)(tf18) reveal a novel chromatin recruitment role for Dcc1.
EMBO Rep., 18, 2017
5GPA
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BU of 5gpa by Molmil
Structural analysis of fatty acid degradation regulator FadR from Bacillus halodurans
Descriptor: GLYCEROL, MAGNESIUM ION, Transcriptional regulator (TetR/AcrR family)
Authors:Lee, J.Y, Yeo, H.K, Park, Y.W.
Deposit date:2016-08-01
Release date:2017-03-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.051 Å)
Cite:Structural basis of operator sites recognition and effector binding in the TetR family transcription regulator FadR.
Nucleic Acids Res., 45, 2017
8DSS
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BU of 8dss by Molmil
X-ray crystal structure of Geobacillus stearothermophilus ComEA
Descriptor: ComE operon protein 1
Authors:Ahmed, I, Neiditch, M.B.
Deposit date:2022-07-22
Release date:2022-12-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Structure-function studies reveal ComEA contains an oligomerization domain essential for transformation in gram-positive bacteria.
Nat Commun, 13, 2022
5XYN
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BU of 5xyn by Molmil
The crystal structure of Csm2-Psy3-Shu1-Shu2 complex from budding yeast
Descriptor: Chromosome segregation in meiosis protein 2, Platinum sensitivity protein 3, Suppressor of HU sensitivity involved in recombination protein 1, ...
Authors:Zhang, S, Zhang, T, Ding, J.
Deposit date:2017-07-09
Release date:2017-11-08
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural basis for the functional role of the Shu complex in homologous recombination.
Nucleic Acids Res., 45, 2017
2OEN
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BU of 2oen by Molmil
Structural mechanism for the fine-tuning of CcpA function by the small molecule effectors glucose-6-phosphate and fructose-1,6-bisphosphate
Descriptor: Catabolite control protein, Phosphocarrier protein HPr
Authors:Schumacher, M.A, Seidel, G, Hillen, W, Brennan, R.G.
Deposit date:2006-12-30
Release date:2007-05-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.17 Å)
Cite:Structural Mechanism for the Fine-tuning of CcpA Function by The Small Molecule Effectors Glucose 6-Phosphate and Fructose 1,6-Bisphosphate.
J.Mol.Biol., 368, 2007
4AC6
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BU of 4ac6 by Molmil
Corynebacterium glutamicum AcnR AU derivative structure
Descriptor: GOLD ION, HTH-TYPE TRANSCRIPTIONAL REPRESSOR ACNR
Authors:Garcia-Nafria, J, Baumgart, M, Turkenburg, J.P, Wilkinson, A.J, Bott, M, Wilson, K.S.
Deposit date:2011-12-14
Release date:2012-12-26
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:Crystal and Solution Studies Reveal that the Transcriptional Regulator Acnr of Corynebacterium Glutamicum is Regulated by Citrate:Mg2+ Binding to a Non-Canonical Pocket.
J.Biol.Chem., 288, 2013
5FV7
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BU of 5fv7 by Molmil
Human Fen1 in complex with an N-hydroxyurea compound
Descriptor: 1-[(2S)-2,3-dihydro-1,4-benzodioxin-2-ylmethyl]-3-hydroxythieno[3,2-d]pyrimidine-2,4(1H,3H)-dione, FLAP ENDONUCLEASE 1, MAGNESIUM ION
Authors:Exell, J.C, Thompson, M.J, Finger, L.D, Shaw, S.K, Abbott, W.M, McWhirter, C, Debreczeni, J.E, Jones, C.D, Nissink, J.W.M, Ward, T.A, Sioberg, C.W.L, Molina, D.M, Durant, S.T, Grasby, J.A.
Deposit date:2016-02-03
Release date:2016-08-17
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:Cellular Active N-Hydroxyurea Fen1 Inhibitors Block Substrate Entry to the Active Site
Nat.Chem.Biol., 12, 2016
4S0R
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BU of 4s0r by Molmil
Structure of GS-TnrA complex
Descriptor: GLUTAMINE, Glutamine synthetase, MAGNESIUM ION, ...
Authors:Schumacher, M.A, Chinnam, N.G, Cuthbert, B, Tonthat, N.K.
Deposit date:2015-01-04
Release date:2015-03-04
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structures of regulatory machinery reveal novel molecular mechanisms controlling B. subtilis nitrogen homeostasis.
Genes Dev., 29, 2015
4WYV
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BU of 4wyv by Molmil
Crystal Structure of Human Translin in Open Conformation
Descriptor: Translin
Authors:Dvir, H, Eliahoo, E, Alian, A.
Deposit date:2014-11-18
Release date:2014-11-26
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3 Å)
Cite:A novel open-barrel structure of octameric translin reveals a potential RNA entryway.
J.Mol.Biol., 427, 2015

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