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4D6O	THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 1H INCUBATION IN 5MM MG (STATE 2) Descriptor: 25MER, ACETATE ION, HOMING ENDONUCLEASE I-DMOI, ... Authors: Molina, R, Stella, S, Redondo, P, Gomez, H, Marcaida, M.J, Orozco, M, Prieto, J, Montoya, G. Deposit date: 2014-11-13 Release date: 2014-12-17 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease. Nat.Struct.Mol.Biol., 22, 2015
5AY8	Crystal structure of human nucleosome containing H3.Y Descriptor: CHLORIDE ION, DNA (146-MER), H3.Y, ... Authors: Kujirai, T, Horikoshi, N, Sato, K, Maehara, K, Machida, S, Osakabe, A, Kimura, H, Ohkawa, Y, Kurumizaka, H. Deposit date: 2015-08-10 Release date: 2016-04-06 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structure and function of human histone H3.Y nucleosome Nucleic Acids Res., 44, 2016
4D6N	THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 10 DAYS INCUBATION IN 5MM MG (STATE 7) Descriptor: 5'-D(*DCP*CP*GP*GP*CP*AP*AP*GP*GP*CP)-3', 5'-D(*DCP*GP*CP*GP*CP*CP*GP*GP*AP*AP*CP*TP*TP*DAP*C)-3', 5'-D(*DGP*CP*CP*TP*TP*GP*CP*CP*GP*GP*GP*TP*AP*DAP)-3', ... Authors: Molina, R, Stella, S, Redondo, P, Gomez, H, Marcaida, M.J, Orozco, M, Prieto, J, Montoya, G. Deposit date: 2014-11-13 Release date: 2014-12-17 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease. Nat.Struct.Mol.Biol., 22, 2015
6HZ8	Structure of McrBC without DNA binding domains (Class 4) Descriptor: 5-methylcytosine-specific restriction enzyme B, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... Authors: Itoh, Y, Nirwan, N, Saikrishnan, K, Amunts, A. Deposit date: 2018-10-22 Release date: 2019-07-24 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: Structure-based mechanism for activation of the AAA+ GTPase McrB by the endonuclease McrC. Nat Commun, 10, 2019
4C64	ULTRA HIGH RESOLUTION DICKERSON-DREW DODECAMER B-DNA Descriptor: 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*GP)-3', MAGNESIUM ION Authors: Mcdonough, M, El-Sagheer, A.H, Brown, T, Schofield, C.J. Deposit date: 2013-09-17 Release date: 2013-10-02 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.32 Å) Cite: Structural insights into how 5-hydroxymethylation influences transcription factor binding. Chem. Commun. (Camb.), 50, 2014
455D	A6/A18 INTER-STRAND DITHIOBIS(PROPANE)-CROSSLINKED DODECAMER (CGCGAATTCGCG)2 Descriptor: DITHIOBIS-(PROPANE), DNA (5'-D(*CP*GP*CP*GP*AP*(SSP)AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION Authors: Chiu, T.K, Kaczor-Grzeskowiak, M, Dickerson, R.E. Deposit date: 1999-03-04 Release date: 1999-10-08 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.43 Å) Cite: Absence of minor groove monovalent cations in the crosslinked dodecamer C-G-C-G-A-A-T-T-C-G-C-G. J.Mol.Biol., 292, 1999
2KQ5	Solution NMR structure of a section of the repeat domain of the type III effector protein PthA Descriptor: Avirulence protein Authors: Neves, J.L, Sforca, M.L, Murakami, M.T, Benedetti, C.E, Zeri, A.C. Deposit date: 2009-10-28 Release date: 2010-09-01 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: An NMR-based structural model of the PthA repeat region reveals a TPR fold that would account for protein-protein and protein-DNA interactions To be Published
1IN4	THERMOTOGA MARITIMA RUVB HOLLIDAY JUNCTION BRANCH MIGRATION MOTOR Descriptor: ACETATE ION, ADENOSINE-5'-DIPHOSPHATE, COBALT (II) ION, ... Authors: Putnam, C.D, Tainer, J.A. Deposit date: 2001-05-12 Release date: 2001-08-08 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structure and mechanism of the RuvB Holliday junction branch migration motor. J.Mol.Biol., 311, 2001
1IN8	THERMOTOGA MARITIMA RUVB T158V Descriptor: ADENOSINE-5'-DIPHOSPHATE, HOLLIDAY JUNCTION DNA HELICASE RUVB Authors: Putnam, C.D, Clancy, S.B, Tsuruta, H, Wetmur, J.G, Tainer, J.A. Deposit date: 2001-05-12 Release date: 2001-08-08 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structure and mechanism of the RuvB Holliday junction branch migration motor. J.Mol.Biol., 311, 2001
3Q23	X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with GMPCPP and Manganese: sustrate complex II Descriptor: DIHYDROGENPHOSPHATE ION, DNA (5'-D(*TP*GP*CP*CP*TP*CP*CP*CP*AP*GP*GP*CP*AP*TP*CP*CP*AP*AP*AP*AP*GP*AP*AP*GP*CP*GP*GP*AP*GP*CP*TP*TP*CP*TP*TP*C)-3'), MANGANESE (II) ION, ... Authors: Gleghorn, M.L, Murakami, K.S. Deposit date: 2010-12-19 Release date: 2011-02-16 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.8 Å) Cite: X-ray crystal structures elucidate the nucleotidyl transfer reaction of transcript initiation using two nucleotides. Proc.Natl.Acad.Sci.USA, 108, 2011
1IN6	THERMOTOGA MARITIMA RUVB K64R MUTANT Descriptor: ACETATE ION, ADENOSINE-5'-DIPHOSPHATE, COBALT (II) ION, ... Authors: Putnam, C.D, Clancy, S.B, Tsuruta, H, Wetmur, J.G, Tainer, J.A. Deposit date: 2001-05-12 Release date: 2001-08-08 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structure and mechanism of the RuvB Holliday junction branch migration motor. J.Mol.Biol., 311, 2001
7EL1	Structure of a protein from bacteria Descriptor: 100AA, CRISPR-associated endonuclease Cas9, DNA (28-MER), ... Authors: Liu, H, Zhu, Y, Huang, Z. Deposit date: 2021-04-07 Release date: 2021-07-28 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.22 Å) Cite: Structural basis of Staphylococcus aureus Cas9 inhibition by AcrIIA14. Nucleic Acids Res., 49, 2021
3Q24	X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with pppGpG and pyrophosphate: product complex Descriptor: DIHYDROGENPHOSPHATE ION, DNA (5'-D(*TP*GP*CP*CP*TP*CP*CP*CP*AP*GP*GP*CP*AP*TP*CP*CP*AP*AP*AP*AP*GP*AP*AP*GP*CP*GP*GP*AP*GP*CP*TP*TP*CP*TP*TP*C)-3'), GUANOSINE-5'-MONOPHOSPHATE, ... Authors: Gleghorn, M.L, Murakami, K.S. Deposit date: 2010-12-19 Release date: 2011-02-16 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.81 Å) Cite: X-ray crystal structures elucidate the nucleotidyl transfer reaction of transcript initiation using two nucleotides. Proc.Natl.Acad.Sci.USA, 108, 2011
1IN7	THERMOTOGA MARITIMA RUVB R170A Descriptor: ACETATE ION, ADENOSINE-5'-DIPHOSPHATE, HOLLIDAY JUNCTION DNA HELICASE RUVB Authors: Putnam, C.D, Clancy, S.B, Tsuruta, H, Wetmur, J.G, Tainer, J.A. Deposit date: 2001-05-12 Release date: 2001-08-08 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structure and mechanism of the RuvB Holliday junction branch migration motor. J.Mol.Biol., 311, 2001
1IN5	THERMOGOTA MARITIMA RUVB A156S MUTANT Descriptor: ADENOSINE-5'-DIPHOSPHATE, HOLLIDAY JUNCTION DNA HELICASE RUVB Authors: Putnam, C.D, Clancy, S.B, Tsuruta, H, Gonzalez, S, Wetmur, J.G, Tainer, J.A. Deposit date: 2001-05-12 Release date: 2001-08-08 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2 Å) Cite: Structure and mechanism of the RuvB Holliday junction branch migration motor. J.Mol.Biol., 311, 2001
3VA1	Crystal structure of the mammalian MDC1 FHA domain Descriptor: Mediator of DNA damage checkpoint protein 1, SULFATE ION Authors: Wu, H.H, Wu, P.Y, Huang, K.F, Kao, Y.Y, Tsai, M.D. Deposit date: 2011-12-28 Release date: 2012-02-01 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.74 Å) Cite: Structural Delineation of MDC1-FHA Domain Binding with CHK2-pThr68. Biochemistry, 2012
8KFW	Crystal structure of ZmMOC1 K229A in complex with a nicked Holliday junction soaked in Mn2+ for 600 seconds Descriptor: 1,2-ETHANEDIOL, DNA (26-MER), DNA (33-MER), ... Authors: Zhang, D, Luo, Z, Lin, Z. Deposit date: 2023-08-16 Release date: 2024-06-26 Last modified: 2024-07-03 Method: X-RAY DIFFRACTION (2.3 Å) Cite: MOC1 cleaves Holliday junctions through a cooperative nick and counter-nick mechanism mediated by metal ions. Nat Commun, 15, 2024
3Q22	X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with GTP and Magnesium: substrate complex I Descriptor: DIHYDROGENPHOSPHATE ION, DNA (5'-D(*TP*GP*CP*CP*TP*CP*CP*CP*AP*GP*GP*CP*AP*TP*CP*CP*AP*AP*AP*AP*GP*AP*AP*GP*CP*GP*GP*AP*GP*CP*TP*TP*CP*TP*TP*C)-3'), GUANOSINE-5'-TRIPHOSPHATE, ... Authors: Gleghorn, M.L, Murakami, K.S. Deposit date: 2010-12-19 Release date: 2011-02-16 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.11 Å) Cite: X-ray crystal structures elucidate the nucleotidyl transfer reaction of transcript initiation using two nucleotides. Proc.Natl.Acad.Sci.USA, 108, 2011
5DCF	C-terminal domain of XerD recombinase in complex with gamma domain of FtsK Descriptor: Tyrosine recombinase XerD,DNA translocase FtsK Authors: Keller, A.N, Xin, Y, Lowe, J, Grainge, I. Deposit date: 2015-08-24 Release date: 2016-09-07 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Activation of Xer-recombination at dif: structural basis of the FtsK gamma-XerD interaction. Sci Rep, 6, 2016
8PC5	H3K36me3 nucleosome-LEDGF/p75 PWWP domain complex Descriptor: Histone H2A, Histone H2B 1.1, Histone H3, ... Authors: Koutna, E, Kouba, T, Veverka, V. Deposit date: 2023-06-09 Release date: 2023-08-16 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (3.02 Å) Cite: Multivalency of nucleosome recognition by LEDGF. Nucleic Acids Res., 51, 2023
8PC6	H3K36me3 nucleosome-LEDGF/p75 PWWP domain complex - pose 2 Descriptor: Histone H2A, Histone H2B 1.1, Histone H3, ... Authors: Koutna, E, Kouba, T, Veverka, V. Deposit date: 2023-06-09 Release date: 2023-08-16 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (3.04 Å) Cite: Multivalency of nucleosome recognition by LEDGF. Nucleic Acids Res., 51, 2023
1NZG	Crystal structure of A-DNA decamer GCGTA(3ME)ACGC, with a modified 5-methyluridine Descriptor: 5'-D(*GP*CP*GP*TP*AP*(3ME)P*AP*CP*GP*C)-3' Authors: Prhavc, M, Prakash, T.P, Minasov, G, Egli, M, Manoharan, M. Deposit date: 2003-02-17 Release date: 2003-08-26 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.6 Å) Cite: 2'-O-[2-[2-(N,N-dimethylamino)ethoxy]ethyl] modified oligonucleotides: symbiosis of charge interaction factors and stereoelectronic effects Org.Lett., 5, 2003
5B42	Crystal structure of the C-terminal endonuclease domain of Aquifex aeolicus MutL. Descriptor: CADMIUM ION, DI(HYDROXYETHYL)ETHER, DNA mismatch repair protein MutL Authors: Fukui, K, Baba, S, Kumasaka, T, Yano, T. Deposit date: 2016-03-30 Release date: 2016-07-13 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.35 Å) Cite: Structural Features and Functional Dependency on beta-Clamp Define Distinct Subfamilies of Bacterial Mismatch Repair Endonuclease MutL J.Biol.Chem., 291, 2016
3VA4	Crystal structure of the mammalian MDC1 FHA domain complexed with CHK2 pThr68 peptide Descriptor: Mediator of DNA damage checkpoint protein 1, Serine/threonine-protein kinase Chk2 Authors: Wu, H.H, Wu, P.Y, Huang, K.F, Kao, Y.Y, Tsai, M.D. Deposit date: 2011-12-28 Release date: 2012-02-01 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (1.54 Å) Cite: Structural Delineation of MDC1-FHA Domain Binding with CHK2-pThr68. Biochemistry, 2012
1L1H	Crystal Structure of the Quadruplex DNA-Drug Complex Descriptor: 3-PYRROLIDIN-1-YL-N-[6-(3-PYRROLIDIN-1-YL-PROPIONYLAMINO)-ACRIDIN-3-YL]-PROPIONAMIDE, 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3', POTASSIUM ION Authors: Haider, S.M, Parkinson, G.N, Neidle, S. Deposit date: 2002-02-16 Release date: 2003-02-11 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Structure of a G-quadruplex-Ligand Complex J.Mol.Biol., 326, 2003

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