PDB: 72372 resultsInfo pagesStatus searchChemie searchBIRD

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5YZX	Crystal structure of E.coli LysU T146D mutant Descriptor: BIS(ADENOSINE)-5'-TETRAPHOSPHATE, CALCIUM ION, Lysine--tRNA ligase, ... Authors: Fang, P, Guo, M. Deposit date: 2017-12-16 Release date: 2018-12-19 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (3.2 Å) Cite: A proposed role for MSC to reserve the canonical function in high eukaryotes prior to stimuli To Be Published
3G9C	Crystal structure of the product Bacillus anthracis glmS ribozyme Descriptor: 2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose, GLMS RIBOZYME, MAGNESIUM ION, ... Authors: Strobel, S.A, Cochrane, J.C, Lipchock, S.V, Smith, K.D. Deposit date: 2009-02-13 Release date: 2009-11-03 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structural and chemical basis for glucosamine 6-phosphate binding and activation of the glmS ribozyme Biochemistry, 48, 2009
2XO0	xpt-pbuX C74U Riboswitch from B. subtilis bound to 24-diamino-1,3,5- triazine identified by virtual screening Descriptor: 1,3,5-TRIAZINE-2,4-DIAMINE, ACETATE ION, COBALT HEXAMMINE(III), ... Authors: Daldrop, P, Reyes, F.E, Robinson, D.A, Hammond, C.M, Lilley, D.M.J, Batey, R.T, Brenk, R. Deposit date: 2010-08-09 Release date: 2011-04-06 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Novel ligands for a purine riboswitch discovered by RNA-ligand docking. Chem. Biol., 18, 2011
3G8T	Crystal structure of the G33A mutant Bacillus anthracis glmS ribozyme bound to GlcN6P Descriptor: 2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose, MAGNESIUM ION, RNA (5'-R(*AP*(A2M)P*GP*CP*GP*CP*CP*AP*GP*AP*AP*CP*U)-3'), ... Authors: Strobel, S.A, Cochrane, J.C, Lipchock, S.V, Smith, K.D. Deposit date: 2009-02-12 Release date: 2009-11-03 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural and chemical basis for glucosamine 6-phosphate binding and activation of the glmS ribozyme Biochemistry, 48, 2009
1CJS	CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN L1 FROM METHANOCOCCUS JANNASCHII Descriptor: 50S RIBOSOMAL PROTEIN L1P Authors: Nevskaya, N, Tishchenko, S, Fedorov, R, Al-Karadaghi, S, Liljas, A, Kraft, A, Piendl, W, Garber, M, Nikonov, S. Deposit date: 1999-04-19 Release date: 2000-05-31 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Archaeal ribosomal protein L1: the structure provides new insights into RNA binding of the L1 protein family. Structure Fold.Des., 8, 2000
8HVJ	The structure of the E. coli mRNA endoonuclease YiCC Descriptor: UPF0701 protein YicC Authors: Xie, W, Hunag, L. Deposit date: 2022-12-27 Release date: 2023-12-27 Method: X-RAY DIFFRACTION (4.05 Å) Cite: The structure of the E. coli mRNA endoonuclease YiCC To Be Published
4H1I	Structure of human thymidylate synthase at low salt conditions Descriptor: SULFATE ION, Thymidylate synthase Authors: Brunn, N, Dibrov, S, Hermann, T. Deposit date: 2012-09-10 Release date: 2012-10-03 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.095 Å) Cite: Analysis of mRNA recognition by human thymidylate synthase. Biosci.Rep., 34, 2014
4MEX	Crystal structure of Escherichia coli RNA polymerase in complex with salinamide A Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Feng, Y, Zhang, Y, Arnold, E, Ebright, R.H. Deposit date: 2013-08-27 Release date: 2014-05-21 Last modified: 2014-06-25 Method: X-RAY DIFFRACTION (3.902 Å) Cite: Transcription inhibition by the depsipeptide antibiotic salinamide A. Elife, 3, 2014
7DOJ	Solution structure of TGS domain of the Mycobacterium tuberculosis Rel protein Descriptor: GTP pyrophosphokinase Authors: Joon, S, Singal, B, Grueber, G. Deposit date: 2020-12-14 Release date: 2021-12-01 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Atomic structure of the regulatory TGS domain of Rel protein from Mycobacterium tuberculosis and its interaction with deacylated tRNA. Febs Lett., 595, 2021
2XNW	XPT-PBUX C74U RIBOSWITCH FROM B. SUBTILIS BOUND TO A TRIAZOLO- TRIAZOLE-DIAMINE LIGAND IDENTIFIED BY VIRTUAL SCREENING Descriptor: 3,6-diamino-1,5-dihydro[1,2,4]triazolo[4,3-b][1,2,4]triazol-4-ium, ACETATE ION, COBALT HEXAMMINE(III), ... Authors: Daldrop, P, Reyes, F.E, Robinson, D.A, Hammond, C.M, Lilley, D.M.J, Brenk, R. Deposit date: 2010-08-06 Release date: 2011-04-06 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Novel ligands for a purine riboswitch discovered by RNA-ligand docking. Chem. Biol., 18, 2011
3GRR	Crystal Structure of the complex between S-Adenosyl Homocysteine and Methanocaldococcus jannaschi Dim1. Descriptor: Dimethyladenosine transferase, S-ADENOSYL-L-HOMOCYSTEINE Authors: Scarsdale, J.N, Musayev, F.N, Rife, J.P. Deposit date: 2009-03-26 Release date: 2010-03-31 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Binding of adenosine-based ligands to the MjDim1 rRNA methyltransferase: implications for reaction mechanism and drug design. Biochemistry, 49, 2010
3GRV	Crystal Structure of the Complex between Adenosine and Methanocaldococcus jannaschi Dim1 Descriptor: ADENOSINE, Dimethyladenosine transferase, SULFATE ION Authors: Scarsdale, J.N, Musayev, F.N, Rife, J.P. Deposit date: 2009-03-26 Release date: 2010-03-31 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Binding of adenosine-based ligands to the MjDim1 rRNA methyltransferase: implications for reaction mechanism and drug design. Biochemistry, 49, 2010
3GRY	Crystal Structure of the complex between S-Adenosyl Methionine and Methanocaldococcus jannaschi Dim1. Descriptor: Dimethyladenosine transferase, PHOSPHATE ION, S-ADENOSYLMETHIONINE Authors: Scarsdale, J.N, Musayev, F.N, Rife, J.P. Deposit date: 2009-03-26 Release date: 2010-03-31 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Binding of adenosine-based ligands to the MjDim1 rRNA methyltransferase: implications for reaction mechanism and drug design. Biochemistry, 49, 2010
2FIH	Crystal Structure Analysis of the B-DNA Dodecamer CGCGAA-aU-TCGCG, with Incorporated Arabino-Uridine (aU) Descriptor: 5'-D(*CP*GP*CP*GP*AP*AP*(UAR)P*TP*CP*GP*CP*G)-3', MAGNESIUM ION Authors: Egli, M, Li, F. Deposit date: 2005-12-29 Release date: 2006-05-23 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.13 Å) Cite: 2'-Fluoroarabino- and arabinonucleic acid show different conformations, resulting in deviating RNA affinities and processing of their heteroduplexes with RNA by RNase H. Biochemistry, 45, 2006
2FII	Crystal Structure Analysis of the B-DNA Dodecamer CGCGAAT-aU-CGCG, with Incorporated Arabino-Uridin (aU) Descriptor: 5'-D(*CP*GP*CP*GP*AP*AP*TP*(UAR)P*CP*GP*CP*G)-3', MAGNESIUM ION Authors: Egli, M, Li, F. Deposit date: 2005-12-29 Release date: 2006-05-23 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.24 Å) Cite: 2'-Fluoroarabino- and arabinonucleic acid show different conformations, resulting in deviating RNA affinities and processing of their heteroduplexes with RNA by RNase H. Biochemistry, 45, 2006
3GRU	Crystal Structure of the Complex between AMP and Methanocaldococcus jannaschi Dim1 Descriptor: ADENOSINE MONOPHOSPHATE, Dimethyladenosine transferase, SULFATE ION Authors: Scarsdale, J.N, Musayev, F.N, Rife, J.P. Deposit date: 2009-03-26 Release date: 2010-03-31 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Binding of adenosine-based ligands to the MjDim1 rRNA methyltransferase: implications for reaction mechanism and drug design. Biochemistry, 49, 2010
6L4O	Crystal structure of API5-FGF2 complex Descriptor: Apoptosis inhibitor 5, Fibroblast growth factor 2 Authors: Lee, B.I, Bong, S.M. Deposit date: 2019-10-18 Release date: 2020-04-29 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Regulation of mRNA export through API5 and nuclear FGF2 interaction. Nucleic Acids Res., 48, 2020
1SQG	The crystal structure of the E. coli Fmu apoenzyme at 1.65 A resolution Descriptor: SUN protein Authors: Foster, P.G, Nunes, C.R, Greene, P, Moustakas, D, Stroud, R.M. Deposit date: 2004-03-18 Release date: 2004-05-18 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.65 Å) Cite: The First Structure of an RNA m5C Methyltransferase, Fmu, Provides Insight into Catalytic Mechanism and Specific Binding of RNA Substrate Structure, 11, 2003
3GLP	1.23 A resolution X-ray structure of (GCUGCUGC)2 Descriptor: 5'-R(*GP*CP*UP*GP*CP*UP*GP*C)-3', GLYCEROL, SULFATE ION Authors: Kiliszek, A, Kierzek, R, Krzyzosiak, W.J, Rypniewski, W. Deposit date: 2009-03-12 Release date: 2009-05-26 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.23 Å) Cite: Structural insights into CUG repeats containing the 'stretched U-U wobble': implications for myotonic dystrophy. Nucleic Acids Res., 37, 2009
2FIJ	Crystal Structure Analysis of the A-DNA Decamer GCGT-2'OMeA-aU-ACGC, with Incorporated 2'-O-Methylated-Adenosine (2'OMeA) and Arabino-Uridine (aU) Descriptor: 5'-D(*GP*CP*GP*TP*(A2M)P*(UAR)P*AP*CP*GP*C)-3', CHLORIDE ION, COBALT HEXAMMINE(III) Authors: Egli, M, Li, F. Deposit date: 2005-12-29 Release date: 2006-05-23 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.19 Å) Cite: 2'-Fluoroarabino- and arabinonucleic acid show different conformations, resulting in deviating RNA affinities and processing of their heteroduplexes with RNA by RNase H. Biochemistry, 45, 2006
2FIL	Crystal Structure Analysis of the A-DNA Decamer GCGT-2'OMeA-faT-ACGC, with Incorporated 2'-O-Methylated-Adenosine (2'OMeA) and 2'-Fluoroarabino-Thymidine (faT) Descriptor: 5'-D(*GP*CP*GP*TP*(A2M)P*(TAF)P*AP*CP*GP*C)-3', COBALT HEXAMMINE(III) Authors: Egli, M, Li, F. Deposit date: 2005-12-29 Release date: 2006-05-23 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.69 Å) Cite: 2'-Fluoroarabino- and arabinonucleic acid show different conformations, resulting in deviating RNA affinities and processing of their heteroduplexes with RNA by RNase H. Biochemistry, 45, 2006
6A4F	Separated uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H Descriptor: MANGANESE (II) ION, Oligoribonuclease, URIDINE-5'-MONOPHOSPHATE Authors: Lee, C.W, Park, S, Lee, J.H. Deposit date: 2018-06-19 Release date: 2019-03-13 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.21 Å) Cite: Structural basis of small RNA hydrolysis by oligoribonuclease (CpsORN) from Colwellia psychrerythraea strain 34H. Sci Rep, 9, 2019
3ICE	Rho transcription termination factor bound to RNA and ADP-BeF3 Descriptor: 5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3', ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, ... Authors: Thomsen, N.D, Berger, J.M. Deposit date: 2009-07-17 Release date: 2009-11-10 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Running in reverse: the structural basis for translocation polarity in hexameric helicases. Cell(Cambridge,Mass.), 139, 2009
4LUN	Structure of the N-terminal mIF4G domain from S. cerevisiae Upf2, a protein involved in the degradation of mRNAs containing premature stop codons Descriptor: CHLORIDE ION, Nonsense-mediated mRNA decay protein 2 Authors: Fourati, Z, Roy, B, Millan, C, Courreux, P.D, Kervestin, S, van Tilbeurgh, H, He, F, Uson, I, Jacobson, A, Graille, M. Deposit date: 2013-07-25 Release date: 2014-07-30 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.641 Å) Cite: A highly conserved region essential for NMD in the Upf2 N-terminal domain. J.Mol.Biol., 426, 2014
2DGU	Solution structure of the RNA binding domain in Heterogeneous nuclear ribonucleoprotein Q Descriptor: Heterogeneous nuclear ribonucleoprotein Q Authors: Abe, C, Muto, Y, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-03-15 Release date: 2006-09-15 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of the RNA binding domain in Heterogeneous nuclear ribonucleoprotein Q To be Published

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