Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1YB9
DownloadVisualize
BU of 1yb9 by Molmil
Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-(N,N-dimethylaminooxy)ethyl] Thymidine (T*)
Descriptor: 5'-D(*GP*CP*GP*TP*AP*(2OT)P*AP*CP*GP*C)-3'), SPERMINE
Authors:Egli, M, Minasov, G, Tereshko, V, Pallan, P.S, Teplova, M, Inamati, G.B, Lesnik, E.A, Owens, S.R, Ross, B.S, Prakash, T.P, Manoharan, M.
Deposit date:2004-12-20
Release date:2005-06-28
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Probing the Influence of Stereoelectronic Effects on the Biophysical Properties of Oligonucleotides: Comprehensive Analysis of the RNA Affinity, Nuclease Resistance, and Crystal Structure of Ten 2'-O-Ribonucleic Acid Modifications.
Biochemistry, 44, 2005
1JN5
DownloadVisualize
BU of 1jn5 by Molmil
Structural basis for the recognition of a nucleoporin FG-repeat by the NTF2-like domain of TAP-p15 mRNA export factor
Descriptor: FG-repeat, TAP, p15
Authors:Fribourg, S, Braun, I.C, Izaurralde, E, Conti, E.
Deposit date:2001-07-23
Release date:2001-10-17
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis for the recognition of a nucleoporin FG repeat by the NTF2-like domain of the TAP/p15 mRNA nuclear export factor.
Mol.Cell, 8, 2001
1JKG
DownloadVisualize
BU of 1jkg by Molmil
Structural basis for the recognition of a nucleoporin FG-repeat by the NTF2-like domain of TAP-p15 mRNA nuclear export factor
Descriptor: TAP, p15
Authors:Fribourg, S, Braun, I.C, Izaurralde, E, Conti, E.
Deposit date:2001-07-12
Release date:2001-10-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for the recognition of a nucleoporin FG repeat by the NTF2-like domain of the TAP/p15 mRNA nuclear export factor.
Mol.Cell, 8, 2001
1D8Y
DownloadVisualize
BU of 1d8y by Molmil
CRYSTAL STRUCTURE OF THE COMPLEX OF DNA POLYMERASE I KLENOW FRAGMENT WITH DNA
Descriptor: D(T)19 OLIGOMER, DNA POLYMERASE I, SULFATE ION, ...
Authors:Teplova, M, Wallace, S.T, Tereshko, V, Minasov, G, Simons, A.M, Cook, P.D, Manoharan, M, Egli, M.
Deposit date:1999-10-26
Release date:1999-12-02
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Structural origins of the exonuclease resistance of a zwitterionic RNA.
Proc.Natl.Acad.Sci.USA, 96, 1999
2L9J
DownloadVisualize
BU of 2l9j by Molmil
hRSV M2-1 core domain structure
Descriptor: Matrix protein 2-1
Authors:Dubosclard, V, Blondot, M, Bontems, F, Eleouet, J, Sizun, C.
Deposit date:2011-02-12
Release date:2012-02-15
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure and functional analysis of the RNA- and viral phosphoprotein-binding domain of respiratory syncytial virus M2-1 protein.
Plos Pathog., 8, 2012
6RJ9
DownloadVisualize
BU of 6rj9 by Molmil
Cryo-EM structure of St1Cas9-sgRNA-tDNA20-AcrIIA6 monomeric assembly.
Descriptor: AcrIIA6, CRISPR-associated endonuclease Cas9 1, sgRNA, ...
Authors:Goulet, A, Chaves-Sanjuan, A, Cambillau, C.
Deposit date:2019-04-26
Release date:2019-10-02
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cas9 Allosteric Inhibition by the Anti-CRISPR Protein AcrIIA6.
Mol.Cell, 76, 2019
1MSC
DownloadVisualize
BU of 1msc by Molmil
CRYSTAL STRUCTURE OF MS2 COAT PROTEIN DIMER
Descriptor: BACTERIOPHAGE MS2 COAT PROTEIN
Authors:Ni, C.-Z, Kodandapani, R, Ely, K.R.
Deposit date:1995-04-28
Release date:1995-07-10
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the MS2 coat protein dimer: implications for RNA binding and virus assembly.
Structure, 3, 1995
4ILR
DownloadVisualize
BU of 4ilr by Molmil
Recognition and Cleavage of a non-structured CRISPR RNA by its Processing Endoribonuclease Cas6
Descriptor: CRISPR-associated endoribonuclease Cas6 2
Authors:Shao, Y, Li, H.
Deposit date:2012-12-31
Release date:2013-03-20
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.088 Å)
Cite:Recognition and cleavage of a nonstructured CRISPR RNA by its processing endoribonuclease Cas6.
Structure, 21, 2013
6C54
DownloadVisualize
BU of 6c54 by Molmil
Ebola nucleoprotein nucleocapsid-like assembly and the asymmetric unit
Descriptor: Nucleoprotein
Authors:Su, Z, Wu, C, Pintilie, G.D, Chiu, W, Amarasinghe, G.K, Leung, D.W.
Deposit date:2018-01-13
Release date:2018-03-07
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (5.8 Å)
Cite:Electron Cryo-microscopy Structure of Ebola Virus Nucleoprotein Reveals a Mechanism for Nucleocapsid-like Assembly.
Cell, 172, 2018
4NIA
DownloadVisualize
BU of 4nia by Molmil
Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints
Descriptor: Coat protein, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Larson, S.B, Day, J.S, McPherson, A.
Deposit date:2013-11-05
Release date:2014-09-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Satellite tobacco mosaic virus refined to 1.4 angstrom resolution.
Acta Crystallogr.,Sect.D, 70, 2014
2VF9
DownloadVisualize
BU of 2vf9 by Molmil
Crystal structure of bacteriophage PRR1
Descriptor: CALCIUM ION, COAT PROTEIN
Authors:Persson, M, Tars, K, Liljas, L.
Deposit date:2007-11-01
Release date:2008-09-23
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:The Capsid of the Small RNA Phage Prr1 is Stabilized by Metal Ions
J.Mol.Biol., 383, 2008
6RJD
DownloadVisualize
BU of 6rjd by Molmil
Cryo-EM structure of St1Cas9-sgRNA-tDNA59-ntPAM complex.
Descriptor: Streptococcus Thermophilus 1 Cas9, ntPAM, sgRNA (78-MER), ...
Authors:Goulet, A, Chaves-Sanjuan, A, Cambillau, C.
Deposit date:2019-04-26
Release date:2019-10-02
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cas9 Allosteric Inhibition by the Anti-CRISPR Protein AcrIIA6.
Mol.Cell, 76, 2019
3HST
DownloadVisualize
BU of 3hst by Molmil
N-Terminal RNASE H domain of rv2228c from mycobacterium tuberculosis as a fusion protein with maltose binding protein
Descriptor: 1,2-ETHANEDIOL, D(-)-TARTARIC ACID, Maltose-binding periplasmic protein, ...
Authors:Watkins, H.A, Baker, E.N.
Deposit date:2009-06-10
Release date:2010-04-28
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural and functional characterization of an RNase HI domain from the bifunctional protein Rv2228c from Mycobacterium tuberculosis.
J.Bacteriol., 192, 2010
6RJG
DownloadVisualize
BU of 6rjg by Molmil
Cryo-EM structure of St1Cas9-sgRNA-AcrIIA6-tDNA59-ntPAM complex.
Descriptor: AcrIIA6, Cas 9, ntPAM, ...
Authors:Goulet, A, Chaves-Sanjuan, A, Cambillau, C.
Deposit date:2019-04-26
Release date:2019-10-02
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cas9 Allosteric Inhibition by the Anti-CRISPR Protein AcrIIA6.
Mol.Cell, 76, 2019
4D2G
DownloadVisualize
BU of 4d2g by Molmil
Crystal structure of human PCNA in complex with p15 peptide
Descriptor: P15, PROLIFERATING CELL NUCLEAR ANTIGEN
Authors:DeBiasio, A, Ibanez, A, Mortuza, G, Molina, R, Cordeiro, T.N, Castillo, F, Villate, M, Merino, N, Lelli, M, Diercks, T, Luque, I, Bernardo, P, Montoya, G, Blanco, F.J.
Deposit date:2014-05-09
Release date:2015-03-18
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structure of P15(Paf)-PCNA Complex and Implications for Clamp Sliding During DNA Replication and Repair.
Nat.Commun., 6, 2015
2HT1
DownloadVisualize
BU of 2ht1 by Molmil
The closed ring structure of the Rho transcription termination factor in complex with nucleic acid in the motor domains
Descriptor: 5'-R(*UP*C)-3', 5'-R(*UP*CP*UP*CP*U)-3', SULFATE ION, ...
Authors:Skordalakes, E, Berger, J.M.
Deposit date:2006-07-24
Release date:2006-11-14
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.51 Å)
Cite:Structural Insights into RNA-Dependent Ring Closure and ATPase Activation by the Rho Termination Factor.
Cell(Cambridge,Mass.), 127, 2006
1QGP
DownloadVisualize
BU of 1qgp by Molmil
NMR STRUCTURE OF THE Z-ALPHA DOMAIN OF ADAR1, 15 STRUCTURES
Descriptor: PROTEIN (DOUBLE STRANDED RNA ADENOSINE DEAMINASE)
Authors:Schade, M, Turner, C.J, Kuehne, R, Schmieder, P, Lowenhaupt, K, Herbert, A, Rich, A, Oschkinat, H.
Deposit date:1999-05-03
Release date:1999-10-19
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:The solution structure of the Zalpha domain of the human RNA editing enzyme ADAR1 reveals a prepositioned binding surface for Z-DNA.
Proc.Natl.Acad.Sci.USA, 96, 1999
3LP3
DownloadVisualize
BU of 3lp3 by Molmil
p15 HIV RNaseH domain with inhibitor MK3
Descriptor: 3-[4-(diethylamino)phenoxy]-6-(ethoxycarbonyl)-5,8-dihydroxy-7-oxo-7,8-dihydro-1,8-naphthyridin-1-ium, MANGANESE (II) ION, p15
Authors:Yan, Y, Munshi, S.K, Prasad, G.S, Su, H.P.
Deposit date:2010-02-04
Release date:2010-06-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis for the inhibition of RNase H activity of HIV-1 reverse transcriptase by RNase H active site-directed inhibitors.
J.Virol., 84, 2010
1DT4
DownloadVisualize
BU of 1dt4 by Molmil
CRYSTAL STRUCTURE OF NOVA-1 KH3 K-HOMOLOGY RNA-BINDING DOMAIN
Descriptor: NEURO-ONCOLOGICAL VENTRAL ANTIGEN 1
Authors:Lewis, H.A, Chen, H, Edo, C, Buckanovich, R.J, Yang, Y.Y.L.
Deposit date:2000-01-11
Release date:2000-02-11
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structures of Nova-1 and Nova-2 K-homology RNA-binding domains.
Structure Fold.Des., 7, 1999
2HB5
DownloadVisualize
BU of 2hb5 by Molmil
Crystal Structure of the Moloney Murine Leukemia Virus RNase H Domain
Descriptor: MAGNESIUM ION, Reverse transcriptase/ribonuclease H, SULFATE ION
Authors:Lim, D, Gregorio, G.G, Bingman, C.A, Martinez-Hackert, E, Hendrickson, W.A, Goff, S.P.
Deposit date:2006-06-13
Release date:2006-08-29
Last modified:2023-03-22
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Crystal Structure of the Moloney Murine Leukemia Virus RNase H Domain.
J.Virol., 80, 2006
4GEL
DownloadVisualize
BU of 4gel by Molmil
Crystal structure of Zucchini
Descriptor: 1,2-ETHANEDIOL, Mitochondrial cardiolipin hydrolase, PHOSPHATE ION, ...
Authors:Nishimasu, H, Fukuhara, S, Ishitani, R, Nureki, O.
Deposit date:2012-08-02
Release date:2012-10-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.756 Å)
Cite:Structure and function of Zucchini endoribonuclease in piRNA biogenesis
Nature, 491, 2012
3HHN
DownloadVisualize
BU of 3hhn by Molmil
Crystal structure of class I ligase ribozyme self-ligation product, in complex with U1A RBD
Descriptor: Class I ligase ribozyme, self-ligation product, MAGNESIUM ION, ...
Authors:Shechner, D.M, Grant, R.A, Bagby, S.C, Bartel, D.P.
Deposit date:2009-05-15
Release date:2009-11-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.987 Å)
Cite:Crystal structure of the catalytic core of an RNA-polymerase ribozyme.
Science, 326, 2009
4FTS
DownloadVisualize
BU of 4fts by Molmil
Crystal structure of the N363T mutant of the Flock House virus capsid
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, CHLORIDE ION, ...
Authors:Speir, J.A, Chen, Z, Reddy, V.S, Johnson, J.E.
Deposit date:2012-06-28
Release date:2012-08-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural study of virus assembly intermediates reveals maturation event sequence and a staging position for externalized lytic peptides
to be published, 2012
3AGV
DownloadVisualize
BU of 3agv by Molmil
Crystal structure of a human IgG-aptamer complex
Descriptor: 5'-R(*GP*GP*AP*GP*GP*(UFT)P*GP*(CFZ)P*(UFT)P*(CFZ)P*(CFZ)P*GP*AP*AP*A*GP*GP*AP*AP*(CFZ)P*(UFT)P*(CFZ)P*(CFZ)P*A)-3', CALCIUM ION, Ig gamma-1 chain C region, ...
Authors:Nomura, Y, Sugiyama, S, Sakamoto, T, Miyakawa, S, Adachi, H, Takano, K, Murakami, S, Inoue, T, Mori, Y, Nakamura, Y, Matsumura, H.
Deposit date:2010-04-08
Release date:2010-11-10
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Conformational plasticity of RNA for target recognition as revealed by the 2.15 A crystal structure of a human IgG-aptamer complex
Nucleic Acids Res., 38, 2010
2R70
DownloadVisualize
BU of 2r70 by Molmil
Crystal structure of infectious bursal disease virus VP1 polymerase, cocrystallized with an oligopeptide mimicking the VP3 C-terminus.
Descriptor: INFECTIOUS BURSAL VIRUS VP1 POLYMERASE
Authors:Garriga, D, Navarro, A, Querol-Audi, J, Abaitua, F, Rodriguez, J.F, Verdaguer, N.
Deposit date:2007-09-07
Release date:2007-11-27
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Activation mechanism of a noncanonical RNA-dependent RNA polymerase.
Proc.Natl.Acad.Sci.Usa, 104, 2007

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon