Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6N7B
DownloadVisualize
BU of 6n7b by Molmil
Structure of the human JAK1 kinase domain with compound 38
Descriptor: GLYCEROL, N-[3-(5-chloro-2-methoxyphenyl)-1-methyl-1H-pyrazol-4-yl]-1H-pyrazolo[4,3-c]pyridine-7-carboxamide, Tyrosine-protein kinase JAK1
Authors:Lupardus, P.J, Brown, D.
Deposit date:2018-11-27
Release date:2019-04-24
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Discovery of a class of highly potent Janus Kinase 1/2 (JAK1/2) inhibitors demonstrating effective cell-based blockade of IL-13 signaling.
Bioorg.Med.Chem.Lett., 29, 2019
3B7J
DownloadVisualize
BU of 3b7j by Molmil
Crystal structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(FabZ) from Helicobacter pylori complexed with juglone
Descriptor: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase, 5-hydroxynaphthalene-1,4-dione, BENZAMIDINE, ...
Authors:Zhang, L, Kong, Y.H, Wu, D, Shen, X, Jiang, H.L.
Deposit date:2007-10-31
Release date:2008-09-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Natural product juglone targets three key enzymes from Helicobacter pylori: inhibition assay with crystal structure characterization
ACTA PHARMACOL.SIN., 29, 2008
6D1C
DownloadVisualize
BU of 6d1c by Molmil
Crystal structure of NDM-1 complexed with compound 3
Descriptor: ACETATE ION, Metallo-beta-lactamase type 2, ZINC ION, ...
Authors:Pemberton, O.A, Chen, Y.
Deposit date:2018-04-11
Release date:2019-04-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Heteroaryl Phosphonates as Noncovalent Inhibitors of Both Serine- and Metallocarbapenemases.
J.Med.Chem., 62, 2019
6D1G
DownloadVisualize
BU of 6d1g by Molmil
Crystal structure of NDM-1 complexed with compound 9
Descriptor: ACETATE ION, Metallo-beta-lactamase type 2, ZINC ION, ...
Authors:Pemberton, O.A, Chen, Y.
Deposit date:2018-04-11
Release date:2019-04-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Heteroaryl Phosphonates as Noncovalent Inhibitors of Both Serine- and Metallocarbapenemases.
J.Med.Chem., 62, 2019
6D1J
DownloadVisualize
BU of 6d1j by Molmil
Crystal structure of NDM-1 complexed with compound 13
Descriptor: ACETATE ION, Metallo-beta-lactamase type 2, ZINC ION, ...
Authors:Pemberton, O.A, Chen, Y.
Deposit date:2018-04-11
Release date:2019-04-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Heteroaryl Phosphonates as Noncovalent Inhibitors of Both Serine- and Metallocarbapenemases.
J.Med.Chem., 62, 2019
9JRP
DownloadVisualize
BU of 9jrp by Molmil
Crystal structure of Aldo-keto reductase 1C3 complexed with compound VS-9
Descriptor: 5-[[3-(3-cyclopropyl-1,2,4-oxadiazol-5-yl)propanoyl-methyl-amino]methyl]-2-methyl-furan-3-carboxylic acid, Aldo-keto reductase family 1 member C3, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Jiang, J, Sun, H, Fang, P.
Deposit date:2024-09-29
Release date:2025-10-01
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Crystal structure of Aldo-keto reductase 1C3 complexed with compound VS-9
To Be Published
4PPQ
DownloadVisualize
BU of 4ppq by Molmil
Mycobacterium tuberculosis RecA citrate bound low temperature structure IIA-CR
Descriptor: 1,2-ETHANEDIOL, CITRATE ANION, Protein RecA, ...
Authors:Chandran, A.V, Prabu, J.R, Patil, N.K, Muniyappa, K, Vijayan, M.
Deposit date:2014-02-27
Release date:2015-03-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structural studies on Mycobacterium tuberculosis RecA: Molecular plasticity and interspecies variability
J.Biosci., 40, 2015
7Z5X
DownloadVisualize
BU of 7z5x by Molmil
ROS1 with AstraZeneca ligand 2
Descriptor: (2R)-2-[5-(6-amino-5-{(1R)-1-[2-(1,3-dihydro-2H-1,2,3-triazol-2-yl)-5-fluorophenyl]ethoxy}pyridin-3-yl)-4-methyl-1,3-thiazol-2-yl]propane-1,2-diol, Proto-oncogene tyrosine-protein kinase ROS
Authors:Hargreaves, D.
Deposit date:2022-03-10
Release date:2022-08-17
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.035 Å)
Cite:Virtual Screening in the Cloud Identifies Potent and Selective ROS1 Kinase Inhibitors.
J.Chem.Inf.Model., 62, 2022
5BYA
DownloadVisualize
BU of 5bya by Molmil
Crystal structure of the catalytic domain of human diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2) in complex with ADP and 1,5-(PCP)2-IP4
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Wang, H, Shears, S.B.
Deposit date:2015-06-10
Release date:2015-07-22
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Synthetic tools for studying the chemical biology of InsP8.
Chem.Commun.(Camb.), 51, 2015
6SHJ
DownloadVisualize
BU of 6shj by Molmil
Escherichia coli AGPase in complex with FBP. Symmetry applied C2
Descriptor: 1,6-di-O-phosphono-beta-D-fructofuranose, Glucose-1-phosphate adenylyltransferase
Authors:Cifuente, J.O, Comino, N, D'Angelo, C, Marina, A, Gil-Carton, D, Albesa-Jove, D, Guerin, M.E.
Deposit date:2019-08-07
Release date:2020-02-05
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:The allosteric control mechanism of bacterial glycogen biosynthesis disclosed by cryoEM.
Curr Res Struct Biol, 2, 2020
7ZFM
DownloadVisualize
BU of 7zfm by Molmil
Engineered Protein Targeting the Zika Viral Envelope Fusion Loop
Descriptor: 1,2-ETHANEDIOL, ACETIC ACID, HEXAETHYLENE GLYCOL, ...
Authors:Athayde, D, Archer, M, Viana, I.F.T, Adan, W.C.S, Xavier, L.S.S, Lins, R.D.
Deposit date:2022-04-01
Release date:2022-08-17
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.711 Å)
Cite:In Vitro Neutralisation of Zika Virus by an Engineered Protein Targeting the Viral Envelope Fusion Loop
SSRN, 2022
3RP2
DownloadVisualize
BU of 3rp2 by Molmil
THE STRUCTURE OF RAT MAST CELL PROTEASE II AT 1.9-ANGSTROMS RESOLUTION
Descriptor: RAT MAST CELL PROTEASE II
Authors:Reynolds, R, Remington, S, Weaver, L, Fischer, R, Anderson, W, Ammon, H, Matthews, B.
Deposit date:1984-09-10
Release date:1984-10-29
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The structure of rat mast cell protease II at 1.9-A resolution.
Biochemistry, 27, 1988
5W3U
DownloadVisualize
BU of 5w3u by Molmil
Crystal structure of SsoPox AsB5 mutant (V27A-I76T-Y97W-Y99F-L130P-L226V)
Descriptor: 1,2-ETHANEDIOL, Aryldialkylphosphatase, COBALT (II) ION, ...
Authors:Hiblot, J, Gotthard, G, Jacquet, P, Daude, D, Bergonzi, C, Chabriere, E, Elias, M.
Deposit date:2017-06-08
Release date:2017-12-20
Last modified:2021-08-18
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Rational engineering of a native hyperthermostable lactonase into a broad spectrum phosphotriesterase.
Sci Rep, 7, 2017
7F3G
DownloadVisualize
BU of 7f3g by Molmil
Crystal structure of DCLK1 kinase domain in complex with ruxolitinib
Descriptor: (3R)-3-cyclopentyl-3-[4-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)-1H-pyrazol-1-yl]propanenitrile, Isoform 4 of Serine/threonine-protein kinase DCLK1
Authors:Lim, H.J, Jang, D.M, Kim, H.S.
Deposit date:2021-06-16
Release date:2021-08-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Basis of Inhibition of DCLK1 by Ruxolitinib.
Int J Mol Sci, 22, 2021
5W4B
DownloadVisualize
BU of 5w4b by Molmil
The crystal structure of human S-adenosylhomocysteine hydrolase (AHCY) bound to benzothiazole inhibitor
Descriptor: 1,2-ETHANEDIOL, 4-[(2,5-dioxo-2,5-dihydro-1H-imidazol-1-yl)methyl]-N-[2-(morpholin-4-yl)-1,3-benzothiazol-6-yl]benzamide, Adenosylhomocysteinase, ...
Authors:Dougan, D.R, Lawson, J.D, Lane, W.
Deposit date:2017-06-09
Release date:2017-06-28
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Identification of AHCY inhibitors using novel high-throughput mass spectrometry.
Biochem. Biophys. Res. Commun., 491, 2017
6MTT
DownloadVisualize
BU of 6mtt by Molmil
Crystal structure of VRC46.01 Fab in complex with gp41 peptide
Descriptor: Antibody VRC46.01 Fab heavy chain, Antibody VRC46.01 Fb light chain, RV217 founder virus gp41 peptide
Authors:Kwon, Y.D, Druz, A, Law, W.H, Peng, D, Veradi, R, Doria-Rose, N.A, Kwong, P.D.
Deposit date:2018-10-21
Release date:2019-03-27
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Longitudinal Analysis Reveals Early Development of Three MPER-Directed Neutralizing Antibody Lineages from an HIV-1-Infected Individual.
Immunity, 50, 2019
4CD1
DownloadVisualize
BU of 4cd1 by Molmil
RnNTPDase2 in complex with PSB-071
Descriptor: 1-AMINO-4-(3-METHYLPHENYL)AMINO-9,10-DIOXO-9,10-DIHYDROANTHRACENE-2-SULFONATE, ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE 2
Authors:Zebisch, M, Schaefer, P, Straeter, N.
Deposit date:2013-10-29
Release date:2014-02-12
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Ntpdase2 in Complex with the Sulfoanthraquinone Inhibitor Psb-071.
J.Struct.Biol., 185, 2014
7W59
DownloadVisualize
BU of 7w59 by Molmil
The cryo-EM structure of human pre-C*-I complex
Descriptor: 116 kDa U5 small nuclear ribonucleoprotein component, ADENOSINE-5'-TRIPHOSPHATE, ATP-dependent RNA helicase DHX8, ...
Authors:Zhan, X, Lu, Y, Shi, Y.
Deposit date:2021-11-29
Release date:2022-06-22
Last modified:2025-06-18
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Mechanism of exon ligation by human spliceosome.
Mol.Cell, 82, 2022
6W8A
DownloadVisualize
BU of 6w8a by Molmil
K2P2.1 (TREK-1):ML335 complex, 10 mM K+
Descriptor: CADMIUM ION, DODECANE, HEXADECANE, ...
Authors:Lolicato, M, Minor, D.L.
Deposit date:2020-03-20
Release date:2021-01-27
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (3.002 Å)
Cite:K 2P channel C-type gating involves asymmetric selectivity filter order-disorder transitions.
Sci Adv, 6, 2020
6AD5
DownloadVisualize
BU of 6ad5 by Molmil
Crystal Structure of HEWL in complex with TEMED (in the aroma form) after 24 hours under fibrillation conditions
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Lysozyme C, ...
Authors:Seraj, Z, Seyedarabi, A.
Deposit date:2018-07-30
Release date:2019-08-14
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The aroma of TEMED as an activation and stabilizing signal for the antibacterial enzyme HEWL.
Plos One, 15, 2020
6LMS
DownloadVisualize
BU of 6lms by Molmil
Solution NMR structure cold shock domain of YB1 from Homo sapiens
Descriptor: Y-box-binding protein 1
Authors:Li, S, Zhang, J, Yang, Y.
Deposit date:2019-12-26
Release date:2020-07-22
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural basis of DNA binding to human YB-1 cold shock domain regulated by phosphorylation.
Nucleic Acids Res., 48, 2020
6R59
DownloadVisualize
BU of 6r59 by Molmil
Crystal structure of PPEP-1(E143A/Y178F) in complex with substrate peptide Ac-EVAPPVP-NH2
Descriptor: ACE-GLU-VAL-ALA-PRO-PRO-VAL-LPD, Pro-Pro endopeptidase, ZINC ION
Authors:Pichlo, C, Baumann, U.
Deposit date:2019-03-24
Release date:2019-06-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Molecular determinants of the mechanism and substrate specificity ofClostridium difficileproline-proline endopeptidase-1.
J.Biol.Chem., 294, 2019
1XQ5
DownloadVisualize
BU of 1xq5 by Molmil
Met-Perch Hemoglobin at 1.9A
Descriptor: Hemoglobin alpha-1 chain, Hemoglobin beta-2 chain, PROTOPORPHYRIN IX CONTAINING FE
Authors:Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2004-10-11
Release date:2004-11-16
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Met-Perch Hemoglobin at 1.9A
To be Published
4NWG
DownloadVisualize
BU of 4nwg by Molmil
Crystal structure of the tyrosine phosphatase SHP-2 with E139D mutation
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, SULFATE ION, ...
Authors:Qiu, W, Lin, A, Hutchinson, A, Romanov, V, Ruzanov, M, Thompson, C, Lam, K, Kisselman, G, Battalie, K, Chirgadze, N.Y.
Deposit date:2013-12-06
Release date:2014-12-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal structure of the tyrosine phosphatase SHP-2 with E139D mutation
To be Published
7YDX
DownloadVisualize
BU of 7ydx by Molmil
Crystal structure of human RIPK1 kinase domain in complex with compound RI-962
Descriptor: 1-methyl-5-[2-(2-methylpropanoylamino)-[1,2,4]triazolo[1,5-a]pyridin-7-yl]-N-[(1S)-1-phenylethyl]indole-3-carboxamide, IODIDE ION, Receptor-interacting serine/threonine-protein kinase 1
Authors:Zhang, L, Wang, Y, Li, Y, Wu, C, Luo, X, Wang, T, Lei, J, Yang, S.
Deposit date:2022-07-04
Release date:2023-04-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.642 Å)
Cite:Generative deep learning enables the discovery of a potent and selective RIPK1 inhibitor.
Nat Commun, 13, 2022

242842

PDB entries from 2025-10-08

PDB statisticsPDBj update infoContact PDBjnumon