PDB: 93656 resultsInfo pagesStatus searchChemie searchBIRD

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6V4A	An open conformation of a Pentameic ligand-gated ion channel with additional N-terminal domain Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Neur_chan_LBD domain-containing protein, PHOSPHATIDYLGLYCEROL-PHOSPHOGLYCEROL Authors: Delarue, M, Hu, H.D. Deposit date: 2019-11-27 Release date: 2020-06-03 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (3.83 Å) Cite: Structural basis for allosteric transitions of a multidomain pentameric ligand-gated ion channel. Proc.Natl.Acad.Sci.USA, 117, 2020
3PZC	Crystal structure of class II aaRS homologue (Bll0957) complexed with Coenzyme A Descriptor: ACETATE ION, Amino acid--[acyl-carrier-protein] ligase 1, COENZYME A, ... Authors: Weygand-Durasevic, I, Luic, M, Mocibob, M, Ivic, N, Subasic, D. Deposit date: 2010-12-14 Release date: 2011-10-19 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Substrate Recognition by Novel Family of Amino Acid:[Carrier Protein] Ligases Croatica Chemica Acta, 84, 2011
2BTZ	crystal structures of human pyruvate dehydrogenase kinase 2 containing physiological and synthetic ligands Descriptor: PYRUVATE DEHYDROGENASE KINASE ISOENZYME 2 Authors: Knoechel, T.R, Tucker, A.D, Robinson, C.M, Phillips, C, Taylor, W, Bungay, P.J, Kasten, S.A, Roche, T.E, Brown, D.G. Deposit date: 2005-06-08 Release date: 2006-02-02 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Regulatory Roles of the N-Terminal Domain Based on Crystal Structures of Human Pyruvate Dehydrogenase Kinase 2 Containing Physiological and Synthetic Ligands. Biochemistry, 45, 2006
3PT3	Crystal structure of the C-terminal lobe of the human UBR5 HECT domain Descriptor: E3 ubiquitin-protein ligase UBR5 Authors: Matta-Camacho, E, Kozlov, G, Menade, M, Gehring, K. Deposit date: 2010-12-02 Release date: 2012-01-25 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.97 Å) Cite: Structure of the HECT C-lobe of the UBR5 E3 ubiquitin ligase. Acta Crystallogr.,Sect.F, 68, 2012
4ZIY	Structure of UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase from Acinetobacter baumannii Descriptor: 1,2-ETHANEDIOL, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2015-04-28 Release date: 2015-05-20 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Structure of UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase from Acinetobacter baumannii to be published
2BU8	crystal structures of human pyruvate dehydrogenase kinase 2 containing physiological and synthetic ligands Descriptor: ADENOSINE-5'-DIPHOSPHATE, DICHLORO-ACETIC ACID, MAGNESIUM ION, ... Authors: Knoechel, T.R, Tucker, A.D, Robinson, C.M, Phillips, C, Taylor, W, Bungay, P.J, Kasten, S.A, Roche, T.E, Brown, D.G. Deposit date: 2005-06-08 Release date: 2006-02-02 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Regulatory Roles of the N-Terminal Domain Based on Crystal Structures of Human Pyruvate Dehydrogenase Kinase 2 Containing Physiological and Synthetic Ligands. Biochemistry, 45, 2006
2BU2	crystal structures of human pyruvate dehydrogenase kinase 2 containing physiological and synthetic ligands Descriptor: 4-({(2R,5S)-2,5-DIMETHYL-4-[(2R)-3,3,3-TRIFLUORO-2-HYDROXY-2-METHYLPROPANOYL]PIPERAZIN-1-YL}CARBONYL)BENZONITRILE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Knoechel, T.R, Tucker, A.D, Robinson, C.M, Phillips, C, Taylor, W, Bungay, P.J, Kasten, S.A, Roche, T.E, Brown, D.G. Deposit date: 2005-06-08 Release date: 2006-02-02 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Regulatory Roles of the N-Terminal Domain Based on Crystal Structures of Human Pyruvate Dehydrogenase Kinase 2 Containing Physiological and Synthetic Ligands. Biochemistry, 45, 2006
6Q0G	Crystal structure of ligand-binding domain of Pseudomonas fluorescens chemoreceptor CtaA in complex with L-proline Descriptor: CHLORIDE ION, PROLINE, Putative methyl-accepting chemotaxis protein Authors: Ud-Din, I.A, Khan, M.F, Roujeinikova, A. Deposit date: 2019-08-01 Release date: 2020-03-18 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2 Å) Cite: Broad Specificity of Amino Acid Chemoreceptor CtaA ofPseudomonas fluorescensIs Afforded by Plasticity of Its Amphipathic Ligand-Binding Pocket. Mol.Plant Microbe Interact., 33, 2020
2BU5	crystal structures of human pyruvate dehydrogenase kinase 2 containing physiological and synthetic ligands Descriptor: 4-({(2R,5S)-2,5-DIMETHYL-4-[(2R)-3,3,3-TRIFLUORO-2-HYDROXY-2-METHYLPROPANOYL]PIPERAZIN-1-YL}CARBONYL)BENZONITRILE, PYRUVATE DEHYDROGENASE KINASE ISOENZYME 2 Authors: Knoechel, T.R, Tucker, A.D, Robinson, C.M, Phillips, C, Taylor, W, Bungay, P.J, Kasten, S.A, Roche, T.E, Brown, D.G. Deposit date: 2005-06-08 Release date: 2006-02-02 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Regulatory Roles of the N-Terminal Domain Based on Crystal Structures of Human Pyruvate Dehydrogenase Kinase 2 Containing Physiological and Synthetic Ligands. Biochemistry, 45, 2006
4DST	Small-molecule ligands bind to a distinct pocket in Ras and inhibit SOS-mediated nucleotide exchange activity Descriptor: 1,2-ETHANEDIOL, 2-(4,6-dichloro-2-methyl-1H-indol-3-yl)ethanamine, ACETATE ION, ... Authors: Oh, A, Maurer, T, Garrenton, L.S, Pitts, K, Anderson, D.J, Skelton, N.J, Fauber, B.P, Pan, B, Malek, S, Stokoe, D, Ludlam, M, Bowman, K.K, Wu, J, Giannetti, A.M, Starovasnik, M.A, Mellman, I, Jackson, P.K, Ruldolph, J, Fang, G, Wang, W. Deposit date: 2012-02-19 Release date: 2012-04-04 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Small-molecule ligands bind to a distinct pocket in Ras and inhibit SOS-mediated nucleotide exchange activity. Proc.Natl.Acad.Sci.USA, 109, 2012
4DSN	Small-molecule ligands bind to a distinct pocket in Ras and inhibit SOS-mediated nucleotide exchange activity Descriptor: 1,2-ETHANEDIOL, GTPase KRas, isoform 2B, ... Authors: Oh, A, Maurer, T, Garrenton, L.S, Pitts, K, Anderson, D.J, Skelton, N.J, Fauber, B.P, Pan, B, Malek, S, Stokoe, D, Ludlam, M, Bowman, K.K, Wu, J, Giannetti, A.M, Starovasnik, M.A, Mellman, I, Jackson, P.K, Ruldolph, J, Fang, G, Wang, W. Deposit date: 2012-02-19 Release date: 2012-04-25 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.03 Å) Cite: Small-molecule ligands bind to a distinct pocket in Ras and inhibit SOS-mediated nucleotide exchange activity. Proc.Natl.Acad.Sci.USA, 109, 2012
3LVV	BSO-inhibited ScGCL Descriptor: (2S)-2-amino-4-(S-butyl-N-phosphonosulfonimidoyl)butanoic acid, ADENOSINE-5'-DIPHOSPHATE, Glutamate--cysteine ligase, ... Authors: Barycki, J.J, Biterova, E.I. Deposit date: 2010-02-22 Release date: 2010-03-16 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural basis for feedback and pharmacological inhibition of Saccharomyces cerevisiae glutamate cysteine ligase. J.Biol.Chem., 285, 2010
6PXY	Crystal structure of ligand-binding domain of Pseudomonas fluorescens chemoreceptor CtaA in complex with L-alanine Descriptor: ALANINE, Putative methyl-accepting chemotaxis protein Authors: Ud-Din, I.A, Khan, M.F, Roujeinikova, A. Deposit date: 2019-07-28 Release date: 2020-03-18 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2 Å) Cite: Broad Specificity of Amino Acid Chemoreceptor CtaA ofPseudomonas fluorescensIs Afforded by Plasticity of Its Amphipathic Ligand-Binding Pocket. Mol.Plant Microbe Interact., 33, 2020
6PY3	Crystal structure of ligand-binding domain of Pseudomonas fluorescens chemoreceptor CtaA in complex with L-isoleucine Descriptor: ISOLEUCINE, Putative methyl-accepting chemotaxis protein Authors: Ud-Din, I.A, Khan, M.F, Roujeinikova, A. Deposit date: 2019-07-28 Release date: 2020-03-18 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Broad Specificity of Amino Acid Chemoreceptor CtaA ofPseudomonas fluorescensIs Afforded by Plasticity of Its Amphipathic Ligand-Binding Pocket. Mol.Plant Microbe Interact., 33, 2020
5VZV	TRIM23 RING domain Descriptor: E3 ubiquitin-protein ligase TRIM23, ZINC ION Authors: Pornillos, O, Dawidziak, D. Deposit date: 2017-05-29 Release date: 2017-08-09 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.812 Å) Cite: Structure and catalytic activation of the TRIM23 RING E3 ubiquitin ligase. Proteins, 85, 2017
8OJ5	60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution) Descriptor: 28S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Penchev, I, DaRosa, P.A, Peter, J.J, Kulathu, Y, Becker, T, Beckmann, R, Kopito, R. Deposit date: 2023-03-23 Release date: 2024-02-21 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: UFM1 E3 ligase promotes recycling of 60S ribosomal subunits from the ER. Nature, 627, 2024
8OJ0	60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native) Descriptor: 28S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Penchev, I, DaRosa, P.A, Becker, T, Beckmann, R, Kopito, R. Deposit date: 2023-03-23 Release date: 2024-02-21 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: UFM1 E3 ligase promotes recycling of 60S ribosomal subunits from the ER. Nature, 627, 2024
6PY4	Crystal structure of ligand-binding domain of Pseudomonas fluorescens chemoreceptor CtaA in complex with L-leucine Descriptor: LEUCINE, Putative methyl-accepting chemotaxis protein Authors: Ud-Din, I.A, Khan, M.F, Roujeinikova, A. Deposit date: 2019-07-29 Release date: 2020-03-18 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2 Å) Cite: Broad Specificity of Amino Acid Chemoreceptor CtaA ofPseudomonas fluorescensIs Afforded by Plasticity of Its Amphipathic Ligand-Binding Pocket. Mol.Plant Microbe Interact., 33, 2020
6PY5	Crystal structure of ligand-binding domain of Pseudomonas fluorescens chemoreceptor CtaA in complex with L-serine Descriptor: Putative methyl-accepting chemotaxis protein, SERINE Authors: Ud-Din, I.A, Khan, M.F, Roujeinikova, A. Deposit date: 2019-07-29 Release date: 2020-03-18 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Broad Specificity of Amino Acid Chemoreceptor CtaA ofPseudomonas fluorescensIs Afforded by Plasticity of Its Amphipathic Ligand-Binding Pocket. Mol.Plant Microbe Interact., 33, 2020
5HEG	Pentameric ligand-gated ion channel GLIC mutant P246G Descriptor: Proton-gated ion channel Authors: Bertozzi, C, Hilf, R.J.C, Dtuzler, R. Deposit date: 2016-01-06 Release date: 2016-03-02 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (3.214 Å) Cite: Signal Transduction at the Domain Interface of Prokaryotic Pentameric Ligand-Gated Ion Channels. Plos Biol., 14, 2016
1HM5	CRYSTAL STRUCTURE ANALYSIS OF THE RABBIT D-GLUCOSE 6-PHOSPHATE ISOMERASE (NO LIGAND BOUND) Descriptor: PHOSPHOGLUCOSE ISOMERASE Authors: Arsenieva, D.A, Jeffery, C.J, Hardre, R, Salmon, L. Deposit date: 2000-12-04 Release date: 2002-09-27 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Conformational Changes in Phosphoglucose Isomerase Induced by Ligand Binding J.Mol.Biol., 323, 2002
5FQD	Structural basis of Lenalidomide induced CK1a degradation by the crl4crbn ubiquitin ligase Descriptor: CASEIN KINASE I ISOFORM ALPHA, DNA DAMAGE-BINDING PROTEIN 1, PROTEIN CEREBLON, ... Authors: Petzold, G, Fischer, E.S, Thoma, N.H. Deposit date: 2015-12-09 Release date: 2016-02-24 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Structural Basis of Lenalidomide-Induced Ck1Alpha Degradation by the Crl4(Crbn) Ubiquitin Ligase. Nature, 532, 2016
4TRH	The Legionella effector SidC defines a unique family of ubiquitin ligases important for bacterial phagosomal remodeling Descriptor: SidC Authors: Hsu, F.S, Luo, X, Qiu, J, Teng, Y, Jin, J, Smolka, M.B, Luo, Z.Q, Mao, Y. Deposit date: 2014-06-16 Release date: 2014-07-02 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.03 Å) Cite: The Legionella effector SidC defines a unique family of ubiquitin ligases important for bacterial phagosomal remodeling. Proc.Natl.Acad.Sci.USA, 111, 2014
2Z1P	The Enterococcus faecalis MSCRAMM ACE binds its ligands by the collagen Hug Model Descriptor: Collagen adhesin protein Authors: Ponnuraj, K. Deposit date: 2007-05-11 Release date: 2007-05-29 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: The Enterococcus faecalis MSCRAMM ACE binds its ligand by the Collagen Hug model J.Biol.Chem., 282, 2007
7R71	Crystal Structure of the UbArk2C-UbcH5b~Ub complex Descriptor: Ubiquitin, Ubiquitin,E3 ubiquitin-protein ligase RNF165, Ubiquitin-conjugating enzyme E2 D2, ... Authors: Paluda, A, Middleton, A.J, Mace, P.D, Day, C.L. Deposit date: 2021-06-24 Release date: 2022-03-09 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Ubiquitin and a charged loop regulate the ubiquitin E3 ligase activity of Ark2C. Nat Commun, 13, 2022

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