Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3BQU
DownloadVisualize
BU of 3bqu by Molmil
Crystal Structure of the 2F5 Fab'-3H6 Fab Complex
Descriptor: 2F5 Fab' heavy chain, 2F5 Fab' light chain, 3H6 Fab heavy chain, ...
Authors:Bryson, S, Julien, J.-P, Isenman, D.E, Kunert, R, Katinger, H, Pai, E.F.
Deposit date:2007-12-20
Release date:2008-10-21
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of the complex between the F(ab)' fragment of the cross-neutralizing anti-HIV-1 antibody 2F5 and the F(ab) fragment of its anti-idiotypic antibody 3H6.
J.Mol.Biol., 382, 2008
7FJE
DownloadVisualize
BU of 7fje by Molmil
Cryo-EM structure of a membrane protein(LL)
Descriptor: CHOLESTEROL, T cell receptor alpha variable 12-3,Possible J 11 gene segment,T cell receptor alpha chain constant, T cell receptor beta variable 6-5,M1-specific T cell receptor beta chain,T cell receptor beta constant 2, ...
Authors:Chen, Y, Zhu, Y, Gao, W, Zhang, A, Guo, C, Huang, Z.
Deposit date:2021-08-03
Release date:2022-07-27
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Cholesterol inhibits TCR signaling by directly restricting TCR-CD3 core tunnel motility.
Mol.Cell, 82, 2022
8A7O
DownloadVisualize
BU of 8a7o by Molmil
beta-2-microglobulin DeltaN6 amyloid fibril form 2PFa
Descriptor: Beta-2-microglobulin form pI 5.3
Authors:Wilkinson, M, Gallardo, R, Radford, S.E, Ranson, N.A.
Deposit date:2022-06-21
Release date:2023-03-22
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Disease-relevant beta 2 -microglobulin variants share a common amyloid fold.
Nat Commun, 14, 2023
2CKB
DownloadVisualize
BU of 2ckb by Molmil
STRUCTURE OF THE 2C/KB/DEV8 COMPLEX
Descriptor: ALPHA, BETA T CELL RECEPTOR, BETA-2 MICROGLOBULIN, ...
Authors:Garcia, K.C, Degano, M, Wilson, I.A.
Deposit date:1998-01-14
Release date:1998-04-29
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis of plasticity in T cell receptor recognition of a self peptide-MHC antigen.
Science, 279, 1998
8A7T
DownloadVisualize
BU of 8a7t by Molmil
beta-2-microglobulin D76N amyloid fibril form 2PFa
Descriptor: Beta-2-microglobulin
Authors:Wilkinson, M, Gallardo, R, Radford, S.E, Ranson, N.A.
Deposit date:2022-06-21
Release date:2023-03-22
Last modified:2023-12-13
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Disease-relevant beta 2 -microglobulin variants share a common amyloid fold.
Nat Commun, 14, 2023
1KTK
DownloadVisualize
BU of 1ktk by Molmil
Complex of Streptococcal pyrogenic enterotoxin C (SpeC) with a human T cell receptor beta chain (Vbeta2.1)
Descriptor: Exotoxin type C, T-cell receptor beta chain
Authors:Sundberg, E.J, Li, H, Llera, A.S, McCormick, J.K, Tormo, J, Karjalainen, K, Schlievert, P.M, Mariuzza, R.A.
Deposit date:2002-01-16
Release date:2002-06-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structures of two streptococcal superantigens bound to TCR beta chains reveal diversity in the architecture of T cell signaling complexes.
Structure, 10, 2002
5VIG
DownloadVisualize
BU of 5vig by Molmil
Crystal structure of anti-Zika antibody Z006 bound to Zika virus envelope protein DIII
Descriptor: CITRATE ANION, Fab heavy chain, Fab light chain, ...
Authors:Keeffe, J.R, West Jr, A.P, Gristick, H.B, Bjorkman, P.J.
Deposit date:2017-04-16
Release date:2017-05-03
Last modified:2017-05-17
Method:X-RAY DIFFRACTION (3 Å)
Cite:Recurrent Potent Human Neutralizing Antibodies to Zika Virus in Brazil and Mexico.
Cell, 169, 2017
1ZT7
DownloadVisualize
BU of 1zt7 by Molmil
crystal structure of class I MHC H-2Kk in complex with a nonapeptide
Descriptor: Beta-2-microglobulin, H-2 class I histocompatibility antigen, K-K alpha chain, ...
Authors:Kellenberger, C, Roussel, A, Malissen, B.
Deposit date:2005-05-26
Release date:2005-10-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3 Å)
Cite:The H-2Kk MHC peptide-binding groove anchors the backbone of an octameric antigenic peptide in an unprecedented mode.
J Immunol., 175, 2005
6TRO
DownloadVisualize
BU of 6tro by Molmil
Crystal structure of the T-cell receptor GVY01 bound to HLA A2*01-GVYDGREHTV
Descriptor: Beta-2-microglobulin, MAGE-A4 peptide (amino acids 230-239), MHC class I antigen, ...
Authors:Coles, C.H, McMurran, C, Lloyd, A, Hibbert, L, Lupardus, P.J, Cole, D.K, Harper, S.
Deposit date:2019-12-19
Release date:2020-06-24
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3 Å)
Cite:T cell receptor interactions with human leukocyte antigen govern indirect peptide selectivity for the cancer testis antigen MAGE-A4.
J.Biol.Chem., 295, 2020
4QOK
DownloadVisualize
BU of 4qok by Molmil
Structural basis for ineffective T-cell responses to MHC anchor residue improved heteroclitic peptides
Descriptor: 1,2-ETHANEDIOL, Beta-2-microglobulin, HLA class I histocompatibility antigen, ...
Authors:Rizkallah, P.J, Cole, D.K, Madura, F, Sewell, A.K.
Deposit date:2014-06-20
Release date:2014-12-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis for ineffective T-cell responses to MHC anchor residue-improved "heteroclitic" peptides.
Eur.J.Immunol., 45, 2015
2OJE
DownloadVisualize
BU of 2oje by Molmil
Mycoplasma arthritidis-derived mitogen complexed with class II MHC molecule HLA-DR1/HA complex in the presence of EDTA
Descriptor: HLA class II histocompatibility antigen, DR alpha chain precursor, DRB1-1 beta chain precursor, ...
Authors:Li, H, Zhao, Y, Guo, Y, Li, Z, Eisele, L, Mourad, W.
Deposit date:2007-01-12
Release date:2007-01-23
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (3 Å)
Cite:Zinc induces dimerization of the class II major histocompatibility complex molecule that leads to cooperative binding to a superantigen.
J.Biol.Chem., 282, 2007
6MJQ
DownloadVisualize
BU of 6mjq by Molmil
Crystal structure of the mCD1d/xxp (JJ295) /iNKTCR ternary complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Antigen-presenting glycoprotein CD1d1, ...
Authors:Zajonc, D.M, Bitra, A, Janssens, J.
Deposit date:2018-09-21
Release date:2019-01-09
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3 Å)
Cite:4"-O-Alkylated alpha-Galactosylceramide Analogues as iNKT-Cell Antigens: Synthetic, Biological, and Structural Studies.
ChemMedChem, 14, 2019
1ZT4
DownloadVisualize
BU of 1zt4 by Molmil
The crystal structure of human CD1d with and without alpha-Galactosylceramide
Descriptor: Beta-2-microglobulin, N-{(1S,2R,3S)-1-[(ALPHA-D-GALACTOPYRANOSYLOXY)METHYL]-2,3-DIHYDROXYHEPTADECYL}HEXACOSANAMIDE, T-cell surface glycoprotein CD1d
Authors:Koch, M, Stronge, V.S, Shepherd, D, Gadola, S.D, Mathew, B, Ritter, G, Fersht, A.R, Besra, G.S, Schmidt, R.R, Jones, E.Y, Cerundolo, V, Structural Proteomics in Europe (SPINE)
Deposit date:2005-05-26
Release date:2005-07-19
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3 Å)
Cite:The crystal structure of human CD1d with and without alpha-galactosylceramide
Nat.Immunol., 6, 2005
1ZS8
DownloadVisualize
BU of 1zs8 by Molmil
Crystal Structure of the Murine MHC Class Ib Molecule M10.5
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-2-microglobulin, histocompatibility 2, ...
Authors:Olson, R, Huey-Tubman, K.E, Dulac, C, Bjorkman, P.J.
Deposit date:2005-07-22
Release date:2005-07-26
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of a pheromone receptor-associated MHC molecule with an open and empty groove.
Plos Biol., 3, 2005
3ARG
DownloadVisualize
BU of 3arg by Molmil
Ternary crystal structure of the mouse NKT TCR-CD1d-alpha-glucosylceramide(C20:2)
Descriptor: (11E,14E)-N-[(2S,3S,4R)-1-(alpha-D-glucopyranosyloxy)-3,4-dihydroxyoctadecan-2-yl]icosa-11,14-dienamide, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Wun, K.S, Rossjohn, J.
Deposit date:2010-11-27
Release date:2011-03-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3 Å)
Cite:A molecular basis for the exquisite CD1d-restricted antigen specificity and functional responses of natural killer T cells
Immunity, 34, 2011
2FL5
DownloadVisualize
BU of 2fl5 by Molmil
Cofactor-containing antibodies: Crystal structure of the original yellow antibody
Descriptor: Immunoglobulin Igg1 Heavy chain, Immunoglobulin Igg1 Lambda Light Chain, RIBOFLAVIN
Authors:Zhu, X, Wilson, I.A.
Deposit date:2006-01-05
Release date:2006-02-21
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3 Å)
Cite:Cofactor-containing antibodies: Crystal structure of the original yellow antibody.
Proc.Natl.Acad.Sci.Usa, 103, 2006
4QRR
DownloadVisualize
BU of 4qrr by Molmil
Crystal Structure of HLA B*3501-IPS in complex with a Delta-Beta TCR, clone 12 TCR
Descriptor: Beta-2-microglobulin, HLA class I histocompatibility antigen, B-35 alpha chain, ...
Authors:Gras, S, Chabrol, E, Rossjohn, J.
Deposit date:2014-07-02
Release date:2014-12-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:The molecular bases of delta / alpha beta T cell-mediated antigen recognition.
J.Exp.Med., 211, 2014
2AEQ
DownloadVisualize
BU of 2aeq by Molmil
An epidemiologically significant epitope of a 1998 influenza virus neuraminidase forms a highly hydrated interface in the NA-antibody complex.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, FAB heavy chain, FAB light chain, ...
Authors:Venkatramani, L, Bochkarev, A, Air, G.M.
Deposit date:2005-07-23
Release date:2005-12-20
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3 Å)
Cite:An Epidemiologically Significant Epitope of a 1998 Human Influenza Virus Neuraminidase Forms a Highly Hydrated Interface in the NA-Antibody Complex
J.Mol.Biol., 356, 2006
1E28
DownloadVisualize
BU of 1e28 by Molmil
Nonstandard peptide binding of HLA-B*5101 complexed with HIV immunodominant epitope KM2(TAFTIPSI)
Descriptor: BETA-2 MICROGLOBULIN LIGHT CHAIN, HLA CLASS I HISTOCOMPATIBILITY ANTIGEN HEAVY CHAIN, PEPTIDE
Authors:Maenaka, K, Maenaka, T, Tomiyama, H, Takiguchi, M, Stuart, D.I, Jones, E.Y.
Deposit date:2000-05-18
Release date:2000-09-12
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (3 Å)
Cite:Nonstandard peptide binding revealed by crystal structures of HLA-B*5101 complexed with HIV immunodominant epitopes.
J Immunol., 165, 2000
1JNL
DownloadVisualize
BU of 1jnl by Molmil
Crystal Structure of Fab-Estradiol Complexes
Descriptor: monoclonal anti-estradiol 17E12E5 immunoglobulin gamma-1 chain, monoclonal anti-estradiol 17E12E5 immunoglobulin kappa chain
Authors:Monnet, C, Bettsworth, F, Stura, E.A, Le Du, M.-H, Menez, R, Derrien, L, Zinn-Justin, S, Gilquin, B, Sibai, G, Battail-Poirot, N, Jolivet, M, Menez, A, Arnaud, M, Ducancel, F, Charbonnier, J.B.
Deposit date:2001-07-24
Release date:2002-02-06
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (3 Å)
Cite:Highly specific anti-estradiol antibodies: structural characterisation and binding diversity.
J.Mol.Biol., 315, 2002
1DBK
DownloadVisualize
BU of 1dbk by Molmil
MOLECULAR BASIS OF CROSS-REACTIVITY AND THE LIMITS OF ANTIBODY-ANTIGEN COMPLEMENTARITY
Descriptor: 5-BETA-ANDROSTANE-3,17-DIONE, IGG1-KAPPA DB3 FAB (HEAVY CHAIN), IGG1-KAPPA DB3 FAB (LIGHT CHAIN)
Authors:Arevalo, J.H, Wilson, I.A.
Deposit date:1993-08-24
Release date:1994-01-31
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (3 Å)
Cite:Molecular basis of crossreactivity and the limits of antibody-antigen complementarity.
Nature, 365, 1993
2A6K
DownloadVisualize
BU of 2a6k by Molmil
Crystal Structure Analysis of the germline antibody 36-65 Fab in complex with the dodecapeptide SLGDNLTNHNLR
Descriptor: DODECAPEPTIDE: SLGDNLTNHNLR, Germline antibody 36-65 Fab heavy chain, Germline antibody 36-65 Fab light chain
Authors:Sethi, D.K, Agarwal, A, Manivel, V, Rao, K.V, Salunke, D.M.
Deposit date:2005-07-03
Release date:2006-06-13
Last modified:2018-03-21
Method:X-RAY DIFFRACTION (3 Å)
Cite:Differential epitope positioning within the germline antibody paratope enhances promiscuity in the primary immune response.
Immunity, 24, 2006
4IRJ
DownloadVisualize
BU of 4irj by Molmil
Structure of the mouse CD1d-4ClPhC-alpha-GalCer-iNKT TCR complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Antigen-presenting glycoprotein CD1d1, ...
Authors:Nemcovic, M, Zajonc, D.M.
Deposit date:2013-01-14
Release date:2013-08-28
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:Enhanced TCR footprint by a novel glycolipid increases NKT-dependent tumor protection.
J.Immunol., 191, 2013
3HG1
DownloadVisualize
BU of 3hg1 by Molmil
Germline-governed recognition of a cancer epitope by an immunodominant human T cell receptor
Descriptor: Beta-2-microglobulin, CANCER/MART-1, GLYCEROL, ...
Authors:Cole, D.K, Yuan, F, Rizkallah, P.J, Miles, J.J, Gostick, E, Price, D.A, Gao, G.F, Jakobsen, B.K, Sewell, A.K.
Deposit date:2009-05-13
Release date:2009-07-28
Last modified:2014-04-09
Method:X-RAY DIFFRACTION (3 Å)
Cite:Germ line-governed recognition of a cancer epitope by an immunodominant human T-cell receptor.
J.Biol.Chem., 284, 2009
6PX6
DownloadVisualize
BU of 6px6 by Molmil
HLA-TCR complex
Descriptor: DQ2.2-glut-L1, HLA class II histocompatibility antigen DQ alpha chain, HLA class II histocompatibility antigen DQ beta chain, ...
Authors:Ting, Y.T, Reid, H.H, Rossjohn, J.
Deposit date:2019-07-24
Release date:2020-01-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.00000334 Å)
Cite:A molecular basis for the T cell response in HLA-DQ2.2 mediated celiac disease.
Proc.Natl.Acad.Sci.USA, 117, 2020

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon