PDB: 35140 resultsInfo pagesStatus searchChemie searchBIRD

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9B37	Open state of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to one concanavalin A dimer. Composite map. Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Nadezhdin, K.D, Gangwar, S.P, Sobolevsky, A.I. Deposit date: 2024-03-18 Release date: 2024-05-22 Last modified: 2024-06-26 Method: ELECTRON MICROSCOPY (6.66 Å) Cite: Kainate receptor channel opening and gating mechanism. Nature, 630, 2024
8RPM	Lysozyme structure based on automated real-time serial crystallography data processing using CrystFEL Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION Authors: White, T.A, Oberthuer, D, Henkel, A. Deposit date: 2024-01-16 Release date: 2024-02-21 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Real-time data processing for serial crystallography experiments To Be Published
8SGV	human liver mitochondrial Catalase Descriptor: Catalase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PROTOPORPHYRIN IX CONTAINING FE Authors: Zhang, Z. Deposit date: 2023-04-13 Release date: 2024-02-21 Method: ELECTRON MICROSCOPY (2.58 Å) Cite: High-Resolution Structural Proteomics of Mitochondria Using the 'Build and Retrieve' Methodology. Mol.Cell Proteomics, 22, 2023
8S2V	SSX structure of Lysozyme grown in microfluidic droplets Descriptor: CHLORIDE ION, Lysozyme C Authors: Stubbs, J, Tews, I, Maly, M. Deposit date: 2024-02-19 Release date: 2024-02-28 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Droplet microfluidics for time-resolved serial crystallography. Iucrj, 11, 2024
9B33	Structure of concanavalin A (ConA) dimer from the open-state structure of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to one ConA dimer. Type II interface between GluK2 ligand-binding domain and ConA Descriptor: CALCIUM ION, Concanavalin V, ZINC ION Authors: Nadezhdin, K.D, Gangwar, S.P, Sobolevsky, A.I. Deposit date: 2024-03-18 Release date: 2024-05-22 Last modified: 2024-06-26 Method: ELECTRON MICROSCOPY (4.07 Å) Cite: Kainate receptor channel opening and gating mechanism. Nature, 630, 2024
9EY5	Crystal structure of human tyrosinase-related protein 1 (TYRP1) in complex with (S)-2,4-dihydroxyphenylalanine Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-hydroxy-L-tyrosine, ... Authors: Ng, Y.M, Soler-Lopez, M. Deposit date: 2024-04-09 Release date: 2024-05-22 Last modified: 2024-07-03 Method: X-RAY DIFFRACTION (2.61 Å) Cite: Interactions of Phenylalanine Derivatives with Human Tyrosinase: Lessons from Experimental and Theoretical tudies. Chembiochem, 25, 2024
9B35	Ligand-binding and transmembrane domains of kainate receptor GluK2 in the open state, a complex with agonist glutamate and positive allosteric modulator BPAM344 Descriptor: GLUTAMIC ACID, Glutamate receptor ionotropic, kainate 2 Authors: Nadezhdin, K.D, Gangwar, S.P, Sobolevsky, A.I. Deposit date: 2024-03-18 Release date: 2024-05-22 Last modified: 2024-06-26 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Kainate receptor channel opening and gating mechanism. Nature, 630, 2024
9B38	Kainate receptor GluK2 in complex with agonist glutamate with pseudo 4-fold symmetrical ligand-binding domain layer Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLUTAMIC ACID, ... Authors: Nadezhdin, K.D, Gangwar, S.P, Sobolevsky, A.I. Deposit date: 2024-03-18 Release date: 2024-05-22 Last modified: 2024-06-26 Method: ELECTRON MICROSCOPY (3.36 Å) Cite: Kainate receptor channel opening and gating mechanism. Nature, 630, 2024
9EY6	Crystal structure of human tyrosinase-related protein 1 (TYRP1) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, 5,6-dihydroxyindole-2-carboxylic acid oxidase, ... Authors: Ng, Y.M, Soler-Lopez, M. Deposit date: 2024-04-09 Release date: 2024-05-22 Last modified: 2024-07-03 Method: X-RAY DIFFRACTION (2.228 Å) Cite: Interactions of Phenylalanine Derivatives with Human Tyrosinase: Lessons from Experimental and Theoretical tudies. Chembiochem, 25, 2024
9B36	Open state of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to two concanavalin A dimers. Composite map. Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Nadezhdin, K.D, Gangwar, S.P, Sobolevsky, A.I. Deposit date: 2024-03-18 Release date: 2024-05-22 Last modified: 2024-06-26 Method: ELECTRON MICROSCOPY (4.29 Å) Cite: Kainate receptor channel opening and gating mechanism. Nature, 630, 2024
9EY7	Crystal structure of human tyrosinase-related protein 1 (TYRP1) in complex with (R)-2,4-dihydroxyphenylalanine Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-hydroxy-L-tyrosine, ... Authors: Ng, Y.M, Soler-Lopez, M. Deposit date: 2024-04-09 Release date: 2024-05-22 Last modified: 2024-07-03 Method: X-RAY DIFFRACTION (2.61 Å) Cite: Interactions of Phenylalanine Derivatives with Human Tyrosinase: Lessons from Experimental and Theoretical tudies. Chembiochem, 25, 2024
9B39	Kainate receptor GluK2 in complex with agonist glutamate with asymmetric ligand-binding domain layer Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLUTAMIC ACID, ... Authors: Nadezhdin, K.D, Gangwar, S.P, Sobolevsky, A.I. Deposit date: 2024-03-18 Release date: 2024-05-22 Last modified: 2024-06-26 Method: ELECTRON MICROSCOPY (3.84 Å) Cite: Kainate receptor channel opening and gating mechanism. Nature, 630, 2024
8ZC5	SARS-CoV-2 Omicron BA.4 spike trimer (6P) in complex with D1F6 Fab, focused refinement of RBD region Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of D1F6 Fab, Light chain of D1F6 Fab, ... Authors: Liu, B, Gao, X, Li, Z, Chen, Q, He, J, Xiong, X. Deposit date: 2024-04-28 Release date: 2024-05-15 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.91 Å) Cite: An unconventional VH1-2 antibody tolerates escape mutations and shows an antigenic hotspot on SARS-CoV-2 spike. Cell Rep, 43, 2024
8Y9P	Crystal structure of bacterial activating sulfotransferase SgdX2 Descriptor: ADENOSINE-3'-5'-DIPHOSPHATE, GLYCEROL, SgdX2 Authors: Mori, T, Teramoto, T, Kakuta, Y. Deposit date: 2024-02-07 Release date: 2024-05-15 Method: X-RAY DIFFRACTION (1.64 Å) Cite: Crystal structure of activating sulfotransferase SgdX2 involved in biosynthesis of secondary metabolite sungeidine. Biochem.Biophys.Res.Commun., 711, 2024
9B34	Structure of concanavalin A (ConA) dimer from the open-state structure of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to two ConA dimers. Type I interface between GluK2 ligand-binding domain and ConA Descriptor: CALCIUM ION, Concanavalin A, ZINC ION Authors: Nadezhdin, K.D, Gangwar, S.P, Sobolevsky, A.I. Deposit date: 2024-03-18 Release date: 2024-05-22 Last modified: 2024-06-26 Method: ELECTRON MICROSCOPY (3.58 Å) Cite: Kainate receptor channel opening and gating mechanism. Nature, 630, 2024
8ZC3	SARS-CoV-2 Omicron BA.4 spike trimer (6P) in complex with 3 D1F6 Fabs (1 RBD up) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of D1F6 Fab, ... Authors: Liu, B, Gao, X, Li, Z, Chen, Q, He, J, Xiong, X. Deposit date: 2024-04-28 Release date: 2024-05-15 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (4.69 Å) Cite: An unconventional VH1-2 antibody tolerates escape mutations and shows an antigenic hotspot on SARS-CoV-2 spike. Cell Rep, 43, 2024
8ZC0	SARS-CoV-2 Omicron BA.2 spike trimer (6P) in complex with 3 D1F6 Fabs (2 RBD up) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of D1F6 Fab, ... Authors: Liu, B, Gao, X, Li, Z, Chen, Q, He, J, Xiong, X. Deposit date: 2024-04-28 Release date: 2024-05-15 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (4.17 Å) Cite: An unconventional VH1-2 antibody tolerates escape mutations and shows an antigenic hotspot on SARS-CoV-2 spike. Cell Rep, 43, 2024
3KL1	Crystal structure of abscisic acid receptor PYL2 at 1.55 A Descriptor: Putative uncharacterized protein At2g26040 Authors: Zhang, X, Wang, G, Chen, Z. Deposit date: 2009-11-06 Release date: 2010-11-10 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Complex Structures of the Abscisic Acid Receptor PYL3/RCAR13 Reveal a Unique Regulatory Mechanism Structure, 20, 2012
8ZBZ	SARS-CoV-2 Omicron BA.2 spike trimer (6P) in complex with 3 D1F6 Fabs (1 RBD up) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of D1F6 Fab, ... Authors: Liu, B, Gao, X, Li, Z, Chen, Q, He, J, Xiong, X. Deposit date: 2024-04-28 Release date: 2024-05-15 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (4.71 Å) Cite: An unconventional VH1-2 antibody tolerates escape mutations and shows an antigenic hotspot on SARS-CoV-2 spike. Cell Rep, 43, 2024
8ZC2	SARS-CoV-2 Omicron BA.2 spike trimer (6P) in complex with D1F6 Fab, head-to-head aggregate Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of D1F6 Fab, ... Authors: Liu, B, Gao, X, Li, Z, Chen, Q, He, J, Xiong, X. Deposit date: 2024-04-28 Release date: 2024-05-29 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (7.82 Å) Cite: An unconventional VH1-2 antibody tolerates escape mutations and shows an antigenic hotspot on SARS-CoV-2 spike. Cell Rep, 43, 2024
8ZBY	SARS-CoV-2 Omicron BA.1 spike trimer (x2-4P) in complex with 3 D1F6 Fabs (0 RBD up) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of D1F6 Fab, ... Authors: Liu, B, Gao, X, Li, Z, Chen, Q, He, J, Xiong, X. Deposit date: 2024-04-28 Release date: 2024-05-15 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.67 Å) Cite: An unconventional VH1-2 antibody tolerates escape mutations and shows an antigenic hotspot on SARS-CoV-2 spike. Cell Rep, 43, 2024
3L0M	Crystal structure of Rab1-activation domain and P4M domain of SidM/DrrA from legionella Descriptor: DrrA, SULFATE ION Authors: Zhu, Y, Shao, F. Deposit date: 2009-12-10 Release date: 2009-12-22 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (3.45 Å) Cite: Structural mechanism of host Rab1 activation by the bifunctional Legionella type IV effector SidM/DrrA Proc.Natl.Acad.Sci.USA, 107, 2010
8ZC4	SARS-CoV-2 Omicron BA.4 spike trimer (6P) in complex with 3 D1F6 Fabs (2 RBD up) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of D1F6 Fab, ... Authors: Liu, B, Gao, X, Li, Z, Chen, Q, He, J, Xiong, X. Deposit date: 2024-04-28 Release date: 2024-05-15 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.95 Å) Cite: An unconventional VH1-2 antibody tolerates escape mutations and shows an antigenic hotspot on SARS-CoV-2 spike. Cell Rep, 43, 2024
1YCK	Crystal structure of human peptidoglycan recognition protein (PGRP-S) Descriptor: Peptidoglycan recognition protein Authors: Guan, R, Wang, Q, Sundberg, E.J, Mariuzza, R.A. Deposit date: 2004-12-22 Release date: 2005-03-22 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Crystal structure of human peptidoglycan recognition protein S (PGRP-S) at 1.70 A resolution. J.Mol.Biol., 347, 2005
6CT5	PptT PAP(CoA) 8918 complex Descriptor: 4'-phosphopantetheinyl transferase, COENZYME A, DIMETHYL SULFOXIDE, ... Authors: Mosior, J, Sacchettini, J, TB Structural Genomics Consortium (TBSGC) Deposit date: 2018-03-22 Release date: 2019-02-06 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.759346 Å) Cite: Opposing reactions in coenzyme A metabolism sensitizeMycobacterium tuberculosisto enzyme inhibition. Science, 363, 2019

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