PDB: 45953 resultsInfo pagesStatus searchChemie searchBIRD

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5D46	Structural Basis for a New Templated Activity by Terminal Deoxynucleotidyl Transferase: Implications for V(D)J Recombination Descriptor: ACETATE ION, DNA (5'-D(*AP*AP*AP*AP*AP*A)-3'), DNA (5'-D(*TP*TP*TP*TP*TP*GP*C)-3'), ... Authors: Loc'h, J, Rosario, S, Delarue, M. Deposit date: 2015-08-07 Release date: 2016-07-27 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural Basis for a New Templated Activity by Terminal Deoxynucleotidyl Transferase: Implications for V(D)J Recombination. Structure, 24, 2016
4OVG	E. coli sliding clamp in complex with (R)-9-(2-amino-2-oxoethyl)-6-chloro-2,3,4,9-tetrahydro-1H-carbazole-2-carboxylic acid Descriptor: (2R)-9-(2-amino-2-oxoethyl)-6-chloro-2,3,4,9-tetrahydro-1H-carbazole-2-carboxylic acid, 1,2-ETHANEDIOL, CALCIUM ION, ... Authors: Yin, Z, Oakley, A.J. Deposit date: 2014-02-21 Release date: 2014-03-05 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Bacterial Sliding Clamp Inhibitors that Mimic the Sequential Binding Mechanism of Endogenous Linear Motifs. J.Med.Chem., 58, 2015
8TW8	Cryo-EM structure of S. cerevisiae Ctf18-RFC-PCNA complex in Apo state conformation I Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chromosome transmission fidelity protein 18, MAGNESIUM ION, ... Authors: Yuan, Z, Georgescu, R, O'Donnell, M, Li, H. Deposit date: 2023-08-20 Release date: 2024-09-04 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Cryo-EM reveals that Ctf18-RFC collaborates with PolE to load the PCNA clamp onto a leading strand DNA To Be Published
8TW7	Cryo-EM structure of S. cerevisiae Ctf18-RFC-PCNA complex in Apo state conformation I Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chromosome transmission fidelity protein 18, MAGNESIUM ION, ... Authors: Yuan, Z, Georgescu, R, O'Donnell, M, Li, H. Deposit date: 2023-08-20 Release date: 2024-09-04 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Cryo-EM reveals that Ctf18-RFC collaborates with PolE to load the PCNA clamp onto a leading strand DNA To Be Published
6IS4	Crystal Structure of Staphylococcus aureus response regulator ArlR DNA binding domain Descriptor: MAGNESIUM ION, Response regulator ArlR, SODIUM ION Authors: Wen, Y, Ouyang, Z. Deposit date: 2018-11-15 Release date: 2019-10-30 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.854 Å) Cite: Deciphering the activation and recognition mechanisms of Staphylococcus aureus response regulator ArlR. Nucleic Acids Res., 47, 2019
7VPX	The cryo-EM structure of the human pre-A complex Descriptor: 5SS, DnaJ homolog subfamily C member 8, PHD finger-like domain-containing protein 5A, ... Authors: Zhang, X, Zhan, X, Shi, Y. Deposit date: 2021-10-18 Release date: 2023-05-03 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural insights into branch site proofreading by human spliceosome. Nat.Struct.Mol.Biol., 2024
3VOK	X-ray Crystal Structure of Wild Type HrtR in the Apo Form with the Target DNA. Descriptor: 5'-D(*AP*TP*GP*AP*CP*AP*CP*TP*GP*TP*GP*TP*CP*AP*T)-3', Transcriptional regulator Authors: Sawai, H, Sugimoto, H, Shiro, Y, Aono, S. Deposit date: 2012-01-27 Release date: 2012-07-25 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural Basis for the Transcriptional Regulation of Heme Homeostasis in Lactococcus lactis. J.Biol.Chem., 287, 2012
7EEW	Crystal structure of the intact MTase from Vibrio vulnificus YJ016 in complex with the DNA-mimicking Ocr protein and the S-adenosyl-L-homocysteine (SAH) Descriptor: Overcome classical restriction gp0.3, S-ADENOSYL-L-HOMOCYSTEINE, Type I restriction-modification system methyltransferase subunit Authors: Seo, P.W, Park, S.Y, Kim, J.S. Deposit date: 2021-03-19 Release date: 2022-03-23 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.896 Å) Cite: Structural features of a minimal intact methyltransferase of a type I restriction-modification system. Int.J.Biol.Macromol., 208, 2022
7EPU	Crystal structure of HsALC1 Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chromodomain-helicase-DNA-binding protein 1-like, MAGNESIUM ION, ... Authors: Wang, L, Chen, K.J. Deposit date: 2021-04-27 Release date: 2021-07-14 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Structural basis of ALC1/CHD1L autoinhibition and the mechanism of activation by the nucleosome. Nat Commun, 12, 2021
5F99	X-ray Structure of the MMTV-A Nucleosome Core Particle Descriptor: CHLORIDE ION, DNA (147-MER), Histone H2A type 1, ... Authors: Frouws, T.D, Richmond, T.J. Deposit date: 2015-12-09 Release date: 2016-02-03 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.63 Å) Cite: X-ray structure of the MMTV-A nucleosome core. Proc.Natl.Acad.Sci.USA, 113, 2016
2GIE	HincII bound to cognate DNA GTTAAC Descriptor: 5'-D(*GP*CP*CP*GP*GP*TP*TP*AP*AP*CP*CP*GP*G)-3', SODIUM ION, Type II restriction enzyme HincII Authors: Horton, N.C, Joshi, H.K, Etzkorn, C, Chatwell, L, Bitinaite, J. Deposit date: 2006-03-28 Release date: 2006-07-18 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Alteration of Sequence Specificity of the Type II Restriction Endonuclease HincII through an Indirect Readout Mechanism. J.Biol.Chem., 281, 2006
185D	SEQUENCE SPECIFICITY OF QUINOXALINE ANTIBIOTICS. 1. SOLUTION STRUCTURE OF A 1:1 COMPLEX BETWEEN TRIOSTIN A AND [D(GACGTC)]2 AND COMPARISON WITH THE SOLUTION STRUCTURE OF THE [N-MECYS3, N-MECYS7]TANDEM-[D(GATATC)]2 COMPLEX Descriptor: 2-CARBOXYQUINOXALINE, DNA (5'-D(*GP*AP*CP*GP*TP*C)-3'), TRIOSTIN A Authors: Addess, K.J, Feigon, J. Deposit date: 1994-08-10 Release date: 1995-02-07 Last modified: 2017-11-01 Method: SOLUTION NMR Cite: Sequence Specificity of Quinoxaline Antibiotics. 1. Solution Structure of a 1:1 Complex between Triostin a and [D(Gacgtc)]2 and Comparison with the Solution Structure of the [N-Mecys3,N-Mecys7]Tandem-[D(Gatatc)]2 Complex. Biochemistry, 33, 1994
3QQ6	The N-terminal DNA binding domain of SinR from Bacillus subtilis Descriptor: HTH-type transcriptional regulator sinR Authors: Colledge, V, Fogg, M.J, Levdikov, V.M, Dodson, E.J, Wilkinson, A.J. Deposit date: 2011-02-15 Release date: 2011-06-15 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structure and Organisation of SinR, the Master Regulator of Biofilm Formation in Bacillus subtilis. J.Mol.Biol., 411, 2011
1LRP	COMPARISON OF THE STRUCTURES OF CRO AND LAMBDA REPRESSOR PROTEINS FROM BACTERIOPHAGE LAMBDA Descriptor: LAMBDA REPRESSOR Authors: Pabo, C, Lewis, M. Deposit date: 1987-12-04 Release date: 1989-01-09 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Comparison of the structures of cro and lambda repressor proteins from bacteriophage lambda. J.Mol.Biol., 169, 1983
7F8T	Re-refinement of the 2XRY X-ray structure of archaeal class II CPD photolyase from Methanosarcina mazei Descriptor: Deoxyribodipyrimidine photolyase, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ... Authors: Maestre-Reyna, M, Yang, C.-H, Huang, W.C, Nango, E, Gusti-Ngurah-Putu, E.-P, Franz-Badur, S, Wu, W.-J, Wu, H.-Y, Wang, P.-H, Liao, J.-H, Lee, C.-C, Huang, K.-F, Chang, Y.-K, Weng, J.-H, Sugahara, M, Owada, S, Joti, Y, Tanaka, R, Tono, K, Kiontke, S, Yamamoto, J, Iwata, S, Essen, L.-O, Bessho, Y, Tsai, M.-D. Deposit date: 2021-07-02 Release date: 2022-03-09 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Serial crystallography captures dynamic control of sequential electron and proton transfer events in a flavoenzyme. Nat.Chem., 14, 2022
7LYB	Cryo-EM structure of the human nucleosome core particle in complex with BRCA1-BARD1-UbcH5c Descriptor: BRCA1-associated RING domain protein 1, DNA (146-MER), DNA (147-MER), ... Authors: Hu, Q, Botuyan, M.V, Zhao, D, Cui, D, Mer, E, Mer, G. Deposit date: 2021-03-06 Release date: 2021-07-28 Last modified: 2021-09-01 Method: ELECTRON MICROSCOPY (3.28 Å) Cite: Mechanisms of BRCA1-BARD1 nucleosome recognition and ubiquitylation. Nature, 596, 2021
3AZN	Crystal Structure of Human Nucleosome Core Particle Containing H4K91Q mutation Descriptor: 146-MER DNA, CHLORIDE ION, Histone H2A type 1-B/E, ... Authors: Iwasaki, W, Tachiwana, H, Kawaguchi, K, Shibata, T, Kagawa, W, Kurumizaka, H. Deposit date: 2011-05-25 Release date: 2011-09-21 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3 Å) Cite: Comprehensive Structural Analysis of Mutant Nucleosomes Containing Lysine to Glutamine (KQ) Substitutions in the H3 and H4 Histone-Fold Domains Biochemistry, 50, 2011
3AZF	Crystal Structure of Human Nucleosome Core Particle Containing H3K79Q mutation Descriptor: 146-MER DNA, CHLORIDE ION, Histone H2A type 1-B/E, ... Authors: Iwasaki, W, Tachiwana, H, Kawaguchi, K, Shibata, T, Kagawa, W, Kurumizaka, H. Deposit date: 2011-05-25 Release date: 2011-09-21 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Comprehensive Structural Analysis of Mutant Nucleosomes Containing Lysine to Glutamine (KQ) Substitutions in the H3 and H4 Histone-Fold Domains Biochemistry, 50, 2011
3AZH	Crystal Structure of Human Nucleosome Core Particle Containing H3K122Q mutation Descriptor: 146-MER DNA, CHLORIDE ION, Histone H2A type 1-B/E, ... Authors: Iwasaki, W, Tachiwana, H, Kawaguchi, K, Shibata, T, Kagawa, W, Kurumizaka, H. Deposit date: 2011-05-25 Release date: 2011-09-21 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3.49 Å) Cite: Comprehensive Structural Analysis of Mutant Nucleosomes Containing Lysine to Glutamine (KQ) Substitutions in the H3 and H4 Histone-Fold Domains Biochemistry, 50, 2011
3AYW	Crystal Structure of Human Nucleosome Core Particle Containing H3K56Q mutation Descriptor: 146-MER DNA, CHLORIDE ION, Histone H2A type 1-B/E, ... Authors: Iwasaki, W, Tachiwana, H, Kawaguchi, K, Shibata, T, Kagawa, W, Kurumizaka, H. Deposit date: 2011-05-19 Release date: 2011-09-21 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Comprehensive Structural Analysis of Mutant Nucleosomes Containing Lysine to Glutamine (KQ) Substitutions in the H3 and H4 Histone-Fold Domains Biochemistry, 50, 2011
3AZI	Crystal Structure of Human Nucleosome Core Particle Containing H4K31Q mutation Descriptor: 146-MER DNA, CHLORIDE ION, Histone H2A type 1-B/E, ... Authors: Iwasaki, W, Tachiwana, H, Kawaguchi, K, Shibata, T, Kagawa, W, Kurumizaka, H. Deposit date: 2011-05-25 Release date: 2011-09-21 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Comprehensive Structural Analysis of Mutant Nucleosomes Containing Lysine to Glutamine (KQ) Substitutions in the H3 and H4 Histone-Fold Domains Biochemistry, 50, 2011
3AZL	Crystal Structure of Human Nucleosome Core Particle Containing H4K77Q mutation Descriptor: 146-MER DNA, CHLORIDE ION, Histone H2A type 1-B/E, ... Authors: Iwasaki, W, Tachiwana, H, Kawaguchi, K, Shibata, T, Kagawa, W, Kurumizaka, H. Deposit date: 2011-05-25 Release date: 2011-09-21 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Comprehensive Structural Analysis of Mutant Nucleosomes Containing Lysine to Glutamine (KQ) Substitutions in the H3 and H4 Histone-Fold Domains Biochemistry, 50, 2011
3AZM	Crystal Structure of Human Nucleosome Core Particle Containing H4K79Q mutation Descriptor: 146-MER DNA, CHLORIDE ION, Histone H2A type 1-B/E, ... Authors: Iwasaki, W, Tachiwana, H, Kawaguchi, K, Shibata, T, Kagawa, W, Kurumizaka, H. Deposit date: 2011-05-25 Release date: 2011-09-21 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.89 Å) Cite: Comprehensive Structural Analysis of Mutant Nucleosomes Containing Lysine to Glutamine (KQ) Substitutions in the H3 and H4 Histone-Fold Domains Biochemistry, 50, 2011
3AZJ	Crystal Structure of Human Nucleosome Core Particle Containing H4K44Q mutation Descriptor: 146-MER DNA, CHLORIDE ION, Histone H2A type 1-B/E, ... Authors: Iwasaki, W, Tachiwana, H, Kawaguchi, K, Shibata, T, Kagawa, W, Kurumizaka, H. Deposit date: 2011-05-25 Release date: 2011-09-21 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.89 Å) Cite: Comprehensive Structural Analysis of Mutant Nucleosomes Containing Lysine to Glutamine (KQ) Substitutions in the H3 and H4 Histone-Fold Domains Biochemistry, 50, 2011
3AZK	Crystal Structure of Human Nucleosome Core Particle Containing H4K59Q mutation Descriptor: 146-MER DNA, CHLORIDE ION, Histone H2A type 1-B/E, ... Authors: Iwasaki, W, Tachiwana, H, Kawaguchi, K, Shibata, T, Kagawa, W, Kurumizaka, H. Deposit date: 2011-05-25 Release date: 2011-09-21 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Comprehensive Structural Analysis of Mutant Nucleosomes Containing Lysine to Glutamine (KQ) Substitutions in the H3 and H4 Histone-Fold Domains Biochemistry, 50, 2011

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