PDB: 7742 resultsInfo pagesStatus searchChemie searchBIRD

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5TMA	Zymomonas mobilis pyruvate decarboxylase mutant PDC-2.3 Descriptor: 1,2-ETHANEDIOL, MAGNESIUM ION, Pyruvate decarboxylase, ... Authors: Alahuhta, P.M, Lunin, V.V. Deposit date: 2016-10-12 Release date: 2017-10-18 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.67 Å) Cite: An iterative computational design approach to increase the thermal endurance of a mesophilic enzyme. Biotechnol Biofuels, 11, 2018
1K88	Crystal structure of procaspase-7 Descriptor: procaspase-7 Authors: Chai, J, Wu, Q, Shiozaki, E, Srinivasa, S.M, Alnemri, E.S, Shi, Y. Deposit date: 2001-10-23 Release date: 2001-11-21 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Crystal structure of a procaspase-7 zymogen: mechanisms of activation and substrate binding Cell(Cambridge,Mass.), 107, 2001
5TVY	Computationally Designed Fentanyl Binder - Fen49 Descriptor: 3,6,9,12,15,18,21,24,27-NONAOXANONACOSANE-1,29-DIOL, Endo-1,4-beta-xylanase A Authors: Bick, M.J, Greisen, P.J, Morey, K.J, Antunes, M.S, La, D, Sankaran, B, Reymond, L, Johnsson, K, Medford, J.I, Baker, D. Deposit date: 2016-11-10 Release date: 2017-10-04 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1 Å) Cite: Computational design of environmental sensors for the potent opioid fentanyl. Elife, 6, 2017
6Y0W	Fucosylated antimicrobial linear peptide cFucRH46D in complex with the fucose binding lectin LecB from Pseudomonas aeruginosa at 2.1 Angstrom resolution Descriptor: 3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid, CALCIUM ION, Fucose-binding lectin, ... Authors: Baeriswyl, S, Stocker, A, Reymond, J.-L. Deposit date: 2020-02-10 Release date: 2021-02-17 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.06 Å) Cite: Fucosylated antimicrobial linear peptide cFucRH46D in complex with the fucose binding lectin LecB from Pseudomonas aeruginosa at 2.1 Angstrom resolution To Be Published
6Y0X	Fucosylated antimicrobial peptide SB6 in complex with the lectin LecRSL from Ralstonia solanacearum at 2.4 Angstrom resolution Descriptor: 3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid, D-LYSINE, Fucose-binding lectin protein, ... Authors: Baeriswyl, S, Stocker, A, Reymond, J.-L. Deposit date: 2020-02-10 Release date: 2021-02-17 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.425 Å) Cite: Fucosylated antimicrobial peptide SB6 in complex with the lectin LecRSL from Ralstonia solanacearum at 2.4 Angstrom resolution To Be Published
6FG4	Crystal Structure of the Amyloid-like IIKVIK Segment from the S. aureus Biofilm-associated PSMalpha1 Descriptor: Phenol-soluble modulin alpha 1 peptide, SULFATE ION Authors: Landau, M, Colletier, J.-P. Deposit date: 2018-01-09 Release date: 2018-08-08 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (1.1 Å) Cite: Extreme amyloid polymorphism in Staphylococcus aureus virulent PSM alpha peptides. Nat Commun, 9, 2018
6FGR	Crystal Structure of the Amyloid-like IIKIIK Segment from the S. aureus Biofilm-associated PSMalpha4 Descriptor: 1,2-ETHANEDIOL, Psm alpha-4, SULFATE ION Authors: Landau, M, Colletier, J.-P. Deposit date: 2018-01-11 Release date: 2018-08-08 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Extreme amyloid polymorphism in Staphylococcus aureus virulent PSM alpha peptides. Nat Commun, 9, 2018
3SDK	Structure of yeast 20S open-gate proteasome with Compound 34 Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, MAGNESIUM ION, N-[(2S)-3-(3-tert-butyl-1,2,4-oxadiazol-5-yl)-1-({(2S)-1-[(4-methylbenzyl)amino]-1-oxo-4-phenylbutan-2-yl}amino)-1-oxopropan-2-yl]-5-methyl-1,2-oxazole-3-carboxamide, ... Authors: Sintchak, M.D. Deposit date: 2011-06-09 Release date: 2012-06-13 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Optimization of a series of dipeptides with a P3 threonine residue as non-covalent inhibitors of the chymotrypsin-like activity of the human 20S proteasome. Bioorg.Med.Chem.Lett., 20, 2010
5UK2	CryoEM structure of an influenza virus receptor-binding site antibody-antigen interface - Class 4 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin HA1, ... Authors: Liu, Y, Pan, J, Caradonna, T, Jenni, S, Raymond, D.D, Schmidt, A.G, Harrison, S.C, Grigorieff, N. Deposit date: 2017-01-19 Release date: 2017-05-31 Last modified: 2020-07-29 Method: ELECTRON MICROSCOPY (4.8 Å) Cite: CryoEM Structure of an Influenza Virus Receptor-Binding Site Antibody-Antigen Interface. J. Mol. Biol., 429, 2017
5UJZ	CryoEM structure of an influenza virus receptor-binding site antibody-antigen interface - Class 1 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin HA1, ... Authors: Liu, Y, Pan, J, Caradonna, T, Jenni, S, Raymond, D.D, Schmidt, A.G, Harrison, S.C, Grigorieff, N. Deposit date: 2017-01-19 Release date: 2017-05-31 Last modified: 2020-07-29 Method: ELECTRON MICROSCOPY (4.8 Å) Cite: CryoEM Structure of an Influenza Virus Receptor-Binding Site Antibody-Antigen Interface. J. Mol. Biol., 429, 2017
4WQP	Crystal structure of RORc in complex with a benzyl sulfonamide inverse agonist Descriptor: N-[4-(4-acetylpiperazin-1-yl)benzyl]-N-(2-methylpropyl)-1-phenylmethanesulfonamide, Nuclear receptor ROR-gamma, SULFATE ION, ... Authors: Boenig, G, Hymowitz, S.G. Deposit date: 2014-10-22 Release date: 2015-01-14 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.99 Å) Cite: Minor Structural Change to Tertiary Sulfonamide RORc Ligands Led to Opposite Mechanisms of Action. Acs Med.Chem.Lett., 6, 2015
8OPC	Virus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNA Descriptor: Genome polyprotein (Fragment), RNA (5'-R(P*UP*UP*UP*UP*U)-3') Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (2.99 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPJ	Global refinement of cubic assembly from truncated PVY coat protein with K176C mutation Descriptor: Genome polyprotein (Fragment) Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (2.99 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPG	Virus-like Particle based on PVY coat protein with dC79 deletion with RNA-free helical architecture Descriptor: Genome polyprotein (Fragment) Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
6FNV	Solution structure of mule deer prion protein with polymorphism S138 Descriptor: Major prion protein Authors: Slapsak, U, Ilc, G, Plavec, J. Deposit date: 2018-02-05 Release date: 2019-08-28 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Solution structure of mule deer prion protein with polymorphism S138 To Be Published
8OPD	Virus-like Particle based on PVY coat protein with dC40 deletion with stacked-ring architecture Descriptor: Genome polyprotein (Fragment) Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPL	Virus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNA Descriptor: Genome polyprotein (Fragment), RNA (5'-R(P*UP*UP*UP*UP*U)-3') Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (2.41 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
6G4Z	Crystal structure of murine NF-kappaB inducing kinase (NIK) in complex with compound 2f Descriptor: 5-fluoranyl-1-[4-[2-[(3~{R})-1-methyl-3-oxidanyl-2-oxidanylidene-pyrrol-3-yl]ethynyl]pyridin-2-yl]indazole-3-carboxamide, Mitogen-activated protein kinase kinase kinase 14 Authors: Leonardo-Silvestre, H, McEwan, P.A, Hymowitz, S.G. Deposit date: 2018-03-28 Release date: 2018-07-04 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.84 Å) Cite: Scaffold-Hopping Approach To Discover Potent, Selective, and Efficacious Inhibitors of NF-kappa B Inducing Kinase. J. Med. Chem., 61, 2018
8OPB	Virus-like Particle based on PVY coat protein with RNA-free helical architecture Descriptor: Genome polyprotein (Fragment) Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-02-14 Method: ELECTRON MICROSCOPY (3.58 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
6G4Y	Crystal structure of murine NF-kappaB inducing kinase (NIK) in complex with compound 1a Descriptor: 10-[2-[(3~{R})-1-methyl-3-oxidanyl-2-oxidanylidene-pyrrolidin-3-yl]ethynyl]-~{N}3-(oxan-4-yl)-5,6-dihydroimidazo[1,2-d][1,4]benzoxazepine-2,3-dicarboxamide, Mitogen-activated protein kinase kinase kinase 14, SULFATE ION Authors: Hole, A.J, Hymowitz, S.G, McEwan, P.A. Deposit date: 2018-03-28 Release date: 2018-07-04 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Scaffold-Hopping Approach To Discover Potent, Selective, and Efficacious Inhibitors of NF-kappa B Inducing Kinase. J. Med. Chem., 61, 2018
5UK0	CryoEM structure of an influenza virus receptor-binding site antibody-antigen interface - Class 2 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin HA1, ... Authors: Liu, Y, Pan, J, Caradonna, T, Jenni, S, Raymond, D.D, Schmidt, A.G, Harrison, S.C, Grigorieff, N. Deposit date: 2017-01-19 Release date: 2017-05-31 Last modified: 2020-07-29 Method: ELECTRON MICROSCOPY (4.8 Å) Cite: CryoEM Structure of an Influenza Virus Receptor-Binding Site Antibody-Antigen Interface. J. Mol. Biol., 429, 2017
6XPI	CutR flat hexamer, form 1 Descriptor: Ethanolamine utilization protein EutS Authors: Ochoa, J.M, Sawaya, M.R, Nguyen, V.N, Duilio, C, Yeates, T.O. Deposit date: 2020-07-08 Release date: 2020-07-22 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Symmetry breaking and structural polymorphism in a bacterial microcompartment shell protein for choline utilization. Protein Sci., 29, 2020
6XPJ	CutR flat hexamer, form 2 Descriptor: Ethanolamine utilization protein EutS, SULFATE ION Authors: Ochoa, J.M, Sawaya, M.R, Nguyen, V.N, Duilio, C, Yeates, T.O. Deposit date: 2020-07-08 Release date: 2020-07-22 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Symmetry breaking and structural polymorphism in a bacterial microcompartment shell protein for choline utilization. Protein Sci., 29, 2020
5UK1	CryoEM structure of an influenza virus receptor-binding site antibody-antigen interface - Class 3 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin HA1, ... Authors: Liu, Y, Pan, J, Caradonna, T, Jenni, S, Raymond, D.D, Schmidt, A.G, Harrison, S.C, Grigorieff, N. Deposit date: 2017-01-19 Release date: 2017-05-31 Last modified: 2020-07-29 Method: ELECTRON MICROSCOPY (4.8 Å) Cite: CryoEM Structure of an Influenza Virus Receptor-Binding Site Antibody-Antigen Interface. J. Mol. Biol., 429, 2017
8BXU	Crystal structure of Odorant Binding Protein 5 from Anopheles gambiae (AgamOBP5) with MPD (2-Methyl-2,4-pentanediol) Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-ETHOXYETHANOL, Odorant binding protein, ... Authors: Liggri, P.G.V, Tsitsanou, K.E, Zographos, S.E. Deposit date: 2022-12-09 Release date: 2023-03-22 Last modified: 2023-04-12 Method: X-RAY DIFFRACTION (1.35 Å) Cite: The structure of AgamOBP5 in complex with the natural insect repellents Carvacrol and Thymol: Crystallographic, fluorescence and thermodynamic binding studies. Int.J.Biol.Macromol., 237, 2023

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