PDB: 82129 resultsInfo pagesStatus searchChemie searchBIRD

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7XM8	Glucagon amyloid fibril Descriptor: Glucagon Authors: Jeong, H, Lin, Y, Lee, Y.-H. Deposit date: 2022-04-25 Release date: 2023-04-19 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Atomistic zipper-like amyloid structure of full-length glucagon To Be Published
7XM7	Crystal Structure of the CBP in complex with the Y08188 Descriptor: 1,2-ETHANEDIOL, 3-ethanoyl-~{N}-[2-fluoranyl-3-(1-methylpyrazol-4-yl)phenyl]-7-methoxy-indolizine-1-carboxamide, CREB-binding protein, ... Authors: Xiang, Q, Zhang, Y, Wang, C, Song, M, Xu, Y. Deposit date: 2022-04-25 Release date: 2022-06-22 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.36 Å) Cite: Discovery and optimization of 1-(1H-indol-1-yl)ethanone derivatives as potent and selective CBP bromodomain inhibitors To Be Published
7XM5	Keap1 Kelch domain (residues 322-609) in complex with 6i Descriptor: Kelch-like ECH-associated protein 1, N-[4-[(2-azanyl-2-oxidanylidene-ethyl)-[4-[(2-azanyl-2-oxidanylidene-ethyl)-(4-methoxyphenyl)sulfonyl-amino]naphthalen-1-yl]sulfamoyl]phenyl]-3-morpholin-4-yl-propanamide Authors: Xu, K. Deposit date: 2022-04-24 Release date: 2022-07-06 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystallography-Guided Optimizations of the Keap1-Nrf2 Inhibitors on the Solvent Exposed Region: From Symmetric to Asymmetric Naphthalenesulfonamides. J.Med.Chem., 65, 2022
7XM3	Crystal structure of Keap1 Kelch domain (residues 322-609) in complex with 6k Descriptor: Kelch-like ECH-associated protein 1, N-[4-[(2-azanyl-2-oxidanylidene-ethyl)-[4-[(2-azanyl-2-oxidanylidene-ethyl)-(4-methoxyphenyl)sulfonyl-amino]naphthalen-1-yl]sulfamoyl]phenyl]-3-(4-ethylpiperazin-1-yl)propanamide Authors: Xu, K. Deposit date: 2022-04-24 Release date: 2022-07-06 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Crystallography-Guided Optimizations of the Keap1-Nrf2 Inhibitors on the Solvent Exposed Region: From Symmetric to Asymmetric Naphthalenesulfonamides. J.Med.Chem., 65, 2022
7XM1	Cryo-EM structure of mTIP60-Ba (metal-ion induced TIP60 (K67E) complex with barium ions Descriptor: BARIUM ION, TIP60 K67E mutant Authors: Ohara, N, Kawakami, N, Arai, R, Adachi, N, Moriya, T, Kawasaki, M, Miyamoto, K. Deposit date: 2022-04-24 Release date: 2023-01-04 Last modified: 2023-11-29 Method: ELECTRON MICROSCOPY (3.96 Å) Cite: Reversible Assembly of an Artificial Protein Nanocage Using Alkaline Earth Metal Ions. J.Am.Chem.Soc., 145, 2023
7XLI	Crystal structure of IsdB linker-NEAT2 bound to a nanobody (VHH) Descriptor: CALCIUM ION, CHLORIDE ION, Iron-regulated surface determinant protein B, ... Authors: Caaveiro, J.M.M, Valenciano-Bellido, S, Tsumoto, K. Deposit date: 2022-04-21 Release date: 2023-05-31 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Targeting hemoglobin receptors IsdH and IsdB of Staphylococcus aureus with a single VHH antibody inhibits bacterial growth. J.Biol.Chem., 299, 2023
7XLF	Crystal structure of CH3-THF complex of methylenetetrahydrofolate reductase from Sphingobium sp. SYK-6 Descriptor: 5,10-methylenetetrahydrofolate reductase, 5-METHYL-5,6,7,8-TETRAHYDROFOLIC ACID, DI(HYDROXYETHYL)ETHER, ... Authors: Yu, H.Y, Senda, M, Senda, T. Deposit date: 2022-04-21 Release date: 2023-04-26 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Crystal structural of methylenetetrahydrofolate reductase from Sphingobium sp. SYK-6 To Be Published
7XLD	Crystal structure of IsdH linker-NEAT3 bound to a nanobody (VHH) Descriptor: Iron-regulated surface determinant protein H, MAGNESIUM ION, Nanobody VHH6, ... Authors: Caaveiro, J.M.M, Valenciano-Bellido, S, Tsumoto, K. Deposit date: 2022-04-21 Release date: 2023-05-31 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Targeting hemoglobin receptors IsdH and IsdB of Staphylococcus aureus with a single VHH antibody inhibits bacterial growth. J.Biol.Chem., 299, 2023
7XLB	Cryo-EM structure of human pannexin 2 Descriptor: Pannexin-2 Authors: Hang, Z, Huawei, Z, Daping, W. Deposit date: 2022-04-21 Release date: 2023-03-15 Method: ELECTRON MICROSCOPY (3.44 Å) Cite: Cryo-EM structure of human heptameric pannexin 2 channel Nat Commun, 14, 2023
7XL7	Function And Structure Research of Salmonella typhimurium Unknown Functional Protein MicN Descriptor: Uncharacterized protein Authors: Wang, Q, Li, B.Q. Deposit date: 2022-04-21 Release date: 2023-05-03 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Function And Structure Research of Salmonella typhimurium Unknown Functional Protein MicN To Be Published
7XL6	Cryo-EM structure of human pannexin 3 Descriptor: Pannexin-3 Authors: Hang, Z, Huawei, Z, Daping, W. Deposit date: 2022-04-21 Release date: 2023-05-03 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (3.25 Å) Cite: Cryo-EM structure of human pannexin 3 To Be Published
7XL5	Crystal structure of the H42T/A85G/I86A mutant of a nadp-dependent alcohol dehydrogenase Descriptor: NADP-dependent isopropanol dehydrogenase Authors: Jiang, Y.Y, Qu, G, Li, X, Sun, Z.T, Han, X, Liu, W.D. Deposit date: 2022-04-21 Release date: 2023-05-31 Last modified: 2024-06-12 Method: X-RAY DIFFRACTION (2.604 Å) Cite: Engineering the hydrogen transfer pathway of an alcohol dehydrogenase to increase activity by rational enzyme design Mol Catal, 530, 2022
7XL1	Crystal structure of chimeric 7D12-Vob nanobody at 1.65 Angstrom Descriptor: Chimeric 7D12-Vob nanobody, MALONATE ION Authors: Caaveiro, J.M.M, Kinoshita, S, Mori, C, Nakakido, M, Tsumoto, K. Deposit date: 2022-04-20 Release date: 2022-11-09 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Molecular basis for thermal stability and affinity in a VHH: Contribution of the framework region and its influence in the conformation of the CDR3. Protein Sci., 31, 2022
7XL0	Crystal structure of Vobarilizumab at 1.70 Angstrom Descriptor: GLYCEROL, Nanobody Vobarilizumab, SULFATE ION Authors: Caaveiro, J.M.M, Mori, C, Kinoshita, S, Nakakido, M, Tsumoto, K. Deposit date: 2022-04-20 Release date: 2022-11-09 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Molecular basis for thermal stability and affinity in a VHH: Contribution of the framework region and its influence in the conformation of the CDR3. Protein Sci., 31, 2022
7XKS	Crystal structure of an alkaline pectate lyase from Bacillus clausii Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, Pectate lyase Authors: Zhou, C, Zheng, Y.Y, Liu, W.D, Ma, Y. Deposit date: 2022-04-20 Release date: 2023-03-29 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.78 Å) Cite: Structure of an Alkaline Pectate Lyase and Rational Engineering with Improved Thermo-Alkaline Stability for Efficient Ramie Degumming. Int J Mol Sci, 24, 2022
7XKR	F1 domain of FoF1-ATPase with the up form of epsilon subunit from Bacillus PS3 Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ... Authors: Nakano, A, Kishikawa, J, Nakanishi, A, Mitsuoka, K, Yokoyama, K. Deposit date: 2022-04-20 Release date: 2022-09-21 Last modified: 2023-10-11 Method: ELECTRON MICROSCOPY (2.6 Å) Cite: Structural basis of unisite catalysis of bacterial F 0 F 1 -ATPase. Pnas Nexus, 1, 2022
7XKQ	F1 domain of FoF1-ATPase with the down form of epsilon subunit from Bacillus PS3 Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ... Authors: Nakano, A, Kishikawa, J, Nakanishi, A, Mitsuoka, K, Yokoyama, K. Deposit date: 2022-04-20 Release date: 2022-09-21 Last modified: 2023-10-11 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Structural basis of unisite catalysis of bacterial F 0 F 1 -ATPase. Pnas Nexus, 1, 2022
7XKP	F1 domain of epsilon C-terminal domain deleted FoF1 from Bacillus PS3,state1,unisite condition Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP synthase gamma chain, ATP synthase subunit alpha, ... Authors: Nakano, A, Kishikawa, J, Nakanishi, A, Mitsuoka, K, Yokoyama, K. Deposit date: 2022-04-20 Release date: 2022-09-21 Last modified: 2023-10-11 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural basis of unisite catalysis of bacterial F 0 F 1 -ATPase. Pnas Nexus, 1, 2022
7XKO	F1 domain of epsilon C-terminal domain deleted FoF1 from Bacillus PS3,state1,nucleotide depeleted Descriptor: ATP synthase gamma chain, ATP synthase subunit alpha, ATP synthase subunit beta, ... Authors: Nakano, A, Kishikawa, J, Nakanishi, A, Mitsuoka, K, Yokoyama, K. Deposit date: 2022-04-20 Release date: 2022-09-21 Last modified: 2023-10-11 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structural basis of unisite catalysis of bacterial F 0 F 1 -ATPase. Pnas Nexus, 1, 2022
7XKM	Crystal structure of DNA-Ag(I) rod comprising a one-dimensional array of 11 silver ions Descriptor: DNA (5'-D(*CP*GP*CP*GP*CP*(BRU)P*CP*(BRU)P*CP*GP*CP*G)-3'), SILVER ION Authors: Kondo, J, Ono, A, Atsugi, T. Deposit date: 2022-04-20 Release date: 2022-07-06 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.79 Å) Cite: A Novel Ag I -DNA Rod Comprising a One-Dimensional Array of 11 Silver Ions within a Double Helical Structure. Angew.Chem.Int.Ed.Engl., 61, 2022
7XKH	Nucleotide-depleted F1 domain of FoF1-ATPase from Bacillus PS3, state1 Descriptor: ATP synthase epsilon chain, ATP synthase gamma chain, ATP synthase subunit alpha, ... Authors: Nakano, A, Kishikawa, J, Nakanishi, A, Mitsuoka, K, Yokoyama, K. Deposit date: 2022-04-19 Release date: 2022-09-21 Last modified: 2023-10-11 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structural basis of unisite catalysis of bacterial F 0 F 1 -ATPase. Pnas Nexus, 1, 2022
7XK9	Structure of human beta2 adrenergic receptor bound to constrained isoproterenol Descriptor: (5R,6R)-6-(propan-2-ylamino)-5,6,7,8-tetrahydronaphthalene-1,2,5-triol, Camelid Antibody Fragment, Endolysin,Beta-2 adrenergic receptor, ... Authors: Xu, X, Shonberg, J, Kaindl, J, Clark, M, Stobel, A, Maul, L, Mayer, D, Hubner, H, Venkatakrishnan, A, Dror, R, Kobilka, B.K, Sunahara, R, Liu, X, Gmeiner, P. Deposit date: 2022-04-19 Release date: 2023-04-26 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Constrained catecholamines gain beta 2 AR selectivity through allosteric effects on pocket dynamics. Nat Commun, 14, 2023
7XK7	Cryo-EM structure of Na+-pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae, with korormicin Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, CALCIUM ION, DODECYL-BETA-D-MALTOSIDE, ... Authors: Kishikawa, J, Ishikawa, M, Masuya, T, Murai, M, Barquera, B, Miyoshi, H. Deposit date: 2022-04-19 Release date: 2022-07-20 Last modified: 2022-08-10 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Cryo-EM structures of Na + -pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae. Nat Commun, 13, 2022
7XK6	Cryo-EM structure of Na+-pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae, with aurachin D-42 Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, Aurachin D, CALCIUM ION, ... Authors: Kishikawa, J, Ishikawa, M, Masuya, T, Murai, M, Barquera, B, Miyoshi, H. Deposit date: 2022-04-19 Release date: 2022-07-20 Last modified: 2022-08-10 Method: ELECTRON MICROSCOPY (3 Å) Cite: Cryo-EM structures of Na + -pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae. Nat Commun, 13, 2022
7XK5	Cryo-EM structure of Na+-pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae, state 3 Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, CALCIUM ION, DODECYL-BETA-D-MALTOSIDE, ... Authors: Kishikawa, J, Ishikawa, M, Masuya, T, Murai, M, Barquera, B, Miyoshi, H. Deposit date: 2022-04-19 Release date: 2022-07-20 Last modified: 2022-08-10 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Cryo-EM structures of Na + -pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae. Nat Commun, 13, 2022

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