PDB: 11971 resultsInfo pagesStatus searchChemie searchBIRD

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4QLC	Crystal structure of chromatosome at 3.5 angstrom resolution Descriptor: CITRIC ACID, DNA (167-mer), H5, ... Authors: Jiang, J.S, Zhou, B.R, Xiao, T.S, Bai, Y.W. Deposit date: 2014-06-11 Release date: 2015-07-22 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3.503 Å) Cite: Structural Mechanisms of Nucleosome Recognition by Linker Histones. Mol.Cell, 33 Suppl 1, 2015
8DS8	Crystal structure of human TNRC18 BAH domain in complex with H3K9me3 peptide Descriptor: Histone H3.1, Trinucleotide repeat-containing gene 18 protein Authors: Song, J.K, Lu, J.W. Deposit date: 2022-07-21 Release date: 2023-08-02 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.84 Å) Cite: TNRC18 engages H3K9me3 to mediate silencing of endogenous retrotransposons. Nature, 623, 2023
6DZT	Cryo-EM structure of nucleosome in complex with a single chain antibody fragment Descriptor: DNA (147-MER), Histone H2A, Histone H2B, ... Authors: Yadav, K.N.S, Zhou, B.-R. Deposit date: 2018-07-05 Release date: 2019-05-22 Last modified: 2024-10-23 Method: ELECTRON MICROSCOPY (2.99 Å) Cite: Atomic resolution cryo-EM structure of a native-like CENP-A nucleosome aided by an antibody fragment. Nat Commun, 10, 2019
2HIO	HISTONE OCTAMER (CHICKEN), CHROMOSOMAL PROTEIN Descriptor: PROTEIN (HISTONE H2A), PROTEIN (HISTONE H2B), PROTEIN (HISTONE H3), ... Authors: Arents, G, Moudrianakis, E.N. Deposit date: 1999-06-15 Release date: 2000-01-12 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (3.1 Å) Cite: The nucleosomal core histone octamer at 3.1 A resolution: a tripartite protein assembly and a left-handed superhelix. Proc.Natl.Acad.Sci.USA, 88, 1991
6Z2A	Structure of Clr4 mutant - F256A/F310A/F427A bound to SAH Descriptor: Histone-lysine N-methyltransferase, H3 lysine-9 specific, MAGNESIUM ION, ... Authors: Stirpe, A, Schalch, T. Deposit date: 2020-05-15 Release date: 2021-05-26 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.456 Å) Cite: SUV39 SET domains mediate crosstalk of heterochromatic histone marks. Elife, 10, 2021
3KXB	Structural characterization of H3K56Q nucleosomes and nucleosomal arrays Descriptor: Histone H2A, Histone H2B 1.1, Histone H3.2, ... Authors: Clark, N.J, Lilyestrom, W.G. Deposit date: 2009-12-02 Release date: 2010-06-23 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Structural characterization of H3K56Q nucleosomes and nucleosomal arrays. Biochim.Biophys.Acta, 1799, 2010
5OMX	X-ray Structure of the H2A-N38C Nucleosome Core Particle Descriptor: CHLORIDE ION, DNA (147-MER), Histone H2A, ... Authors: Frouws, T.D, Richmond, T.J. Deposit date: 2017-08-02 Release date: 2017-11-15 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.32 Å) Cite: Site-Specific Disulfide Crosslinked Nucleosomes with Enhanced Stability. J. Mol. Biol., 430, 2018
4FT4	crystal structure of Zea mays ZMET2 in complex H3(1-32)K9me2 peptide and SAH Descriptor: DNA (cytosine-5)-methyltransferase 1, H3(1-32)K9me2 peptide, S-ADENOSYL-L-HOMOCYSTEINE Authors: Du, J, Patel, D.J. Deposit date: 2012-06-27 Release date: 2012-10-17 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Dual Binding of Chromomethylase Domains to H3K9me2-Containing Nucleosomes Directs DNA Methylation in Plants. Cell(Cambridge,Mass.), 151, 2012
5ONW	X-Ray crystal structure of a nucleosome core particle with its DNA site-specifically crosslinked to the histone octamer and the two H2A/H2B dimers crosslinked via H2A N38C Descriptor: CHLORIDE ION, DNA (147-MER), Histone H2A, ... Authors: Frouws, T.D, Barth, P.D, Richmond, T.J. Deposit date: 2017-08-04 Release date: 2017-11-22 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Site-Specific Disulfide Crosslinked Nucleosomes with Enhanced Stability. J. Mol. Biol., 430, 2018
2WP1	Structure of Brdt bromodomain 2 bound to an acetylated histone H3 peptide Descriptor: BROMODOMAIN TESTIS-SPECIFIC PROTEIN, HISTONE H3 Authors: Moriniere, J, Rousseaux, S, Steuerwald, U, Soler-Lopez, M, Curtet, S, Vitte, A.-L, Govin, J, Gaucher, J, Sadoul, K, Hart, D.J, Krijgsveld, J, Khochbin, S, Mueller, C.W, Petosa, C. Deposit date: 2009-08-02 Release date: 2009-09-22 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Cooperative Binding of Two Acetylation Marks on a Histone Tail by a Single Bromodomain. Nature, 461, 2009
7X6L	Cryo-EM structure of H3 hemagglutinin from A/HongKong/01/1968 in complex with a neutralizing antibody 28-12 Descriptor: Heavy chain of antibody 12 fab, Hemagglutinin, The light chain of the antibody 12 fab Authors: Cong, Y, Liu, C.X. Deposit date: 2022-03-07 Release date: 2022-03-23 Last modified: 2024-11-13 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Unique binding pattern for a lineage of human antibodies with broad reactivity against influenza A virus. Nat Commun, 13, 2022
4JJN	Crystal structure of heterochromatin protein Sir3 in complex with a silenced yeast nucleosome Descriptor: DNA (146-MER), Histone H2A.2, Histone H2B.2, ... Authors: Wang, F, Li, G, Mohammed, A, Lu, C, Currie, M, Johnson, A, Moazed, D. Deposit date: 2013-03-08 Release date: 2013-05-15 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (3.09 Å) Cite: Heterochromatin protein Sir3 induces contacts between the amino terminus of histone H4 and nucleosomal DNA. Proc.Natl.Acad.Sci.USA, 110, 2013
6MUP	CENP-A nucleosome bound by two copies of CENP-C(CD) and two copies CENP-N(NT) Descriptor: Centromere protein C, Centromere protein N, DNA (147-MER), ... Authors: Allu, P.K, Black, B.E. Deposit date: 2018-10-23 Release date: 2019-07-24 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Structure of the Human Core Centromeric Nucleosome Complex. Curr.Biol., 29, 2019
3B95	EuHMT1 (Glp) Ankyrin Repeat Domain (Structure 2) Descriptor: Euchromatic histone-lysine N-methyltransferase 1, Histone H3 N-terminal Peptide, SULFATE ION Authors: Collins, R.E, Horton, J.R, Cheng, X. Deposit date: 2007-11-02 Release date: 2008-02-12 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.99 Å) Cite: The ankyrin repeats of G9a and GLP histone methyltransferases are mono- and dimethyllysine binding modules. Nat.Struct.Mol.Biol., 15, 2008
6R1T	Structure of LSD2/NPAC-linker/nucleosome core particle complex: Class 1, free nuclesome Descriptor: DNA (147-MER), HISTONE H2A, Histone H2A, ... Authors: Marabelli, C, Pilotto, S, Chittori, S, Subramaniam, S, Mattevi, A. Deposit date: 2019-03-15 Release date: 2019-04-24 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (4.02 Å) Cite: A Tail-Based Mechanism Drives Nucleosome Demethylation by the LSD2/NPAC Multimeric Complex. Cell Rep, 27, 2019
6MUO	CENP-A nucleosome bound by two copies of CENP-C(CD) and one copy CENP-N(NT) Descriptor: Centromere protein C, Centromere protein N, DNA/RNA (147-MER), ... Authors: Allu, P.K, Black, B.E. Deposit date: 2018-10-23 Release date: 2019-07-24 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Structure of the Human Core Centromeric Nucleosome Complex. Curr.Biol., 29, 2019
7D20	Cryo-EM structure of SET8-CENP-A-nucleosome complex Descriptor: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... Authors: Ho, C.-H, Takizawa, Y, Kobayashi, W, Arimura, Y, Kurumizaka, H. Deposit date: 2020-09-15 Release date: 2021-02-10 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural basis of nucleosomal histone H4 lysine 20 methylation by SET8 methyltransferase. Life Sci Alliance, 4, 2021
6TEM	CENP-A nucleosome core particle with 145 base pairs of the Widom 601 sequence by cryo-EM Descriptor: Histone H2A, Histone H2B 1.1, Histone H3-like centromeric protein A, ... Authors: Boopathi, R, Danev, R, Petosa, C, Bednar, J. Deposit date: 2019-11-12 Release date: 2020-04-08 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Phase-plate cryo-EM structure of the Widom 601 CENP-A nucleosome core particle reveals differential flexibility of the DNA ends. Nucleic Acids Res., 48, 2020
2OQ6	Crystal structure of JMJD2A complexed with histone H3 peptide trimethylated at Lys9 Descriptor: JmjC domain-containing histone demethylation protein 3A, N-OXALYLGLYCINE, NICKEL (II) ION, ... Authors: Pilka, E.S, Ng, S.S, Kavanagh, K.L, McDonough, M.A, Savitsky, P, von Delft, F, Arrowsmith, C.H, Weigelt, J, Edwards, A, Sundstrom, M, Schofield, C.J, Oppermann, U, Structural Genomics Consortium (SGC) Deposit date: 2007-01-31 Release date: 2007-03-13 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structures of histone demethylase JMJD2A reveal basis for substrate specificity. Nature, 448, 2007
2OS2	Crystal structure of JMJD2A complexed with histone H3 peptide trimethylated at Lys36 Descriptor: JmjC domain-containing histone demethylation protein 3A, N-OXALYLGLYCINE, NICKEL (II) ION, ... Authors: Kavanagh, K.L, Ng, S.S, Pilka, E, McDonough, M.A, Savitsky, P, von Delft, F, Arrowsmith, C.H, Weigelt, J, Edwards, A, Sundstrom, M, Schofield, C.J, Oppermann, U, Structural Genomics Consortium (SGC) Deposit date: 2007-02-05 Release date: 2007-03-13 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Crystal structures of histone demethylase JMJD2A reveal basis for substrate specificity. Nature, 448, 2007
2RI7	Crystal structure of PHD finger-linker-bromodomain Y17E mutant from human BPTF in the H3(1-9)K4ME2 bound state Descriptor: GLYCEROL, ISOPROPYL ALCOHOL, Nucleosome-remodeling factor subunit BPTF, ... Authors: Li, H, Patel, D.J. Deposit date: 2007-10-10 Release date: 2007-12-11 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.45 Å) Cite: Structural Basis for Lower Lysine Methylation State-Specific Readout by MBT Repeats of L3MBTL1 and an Engineered PHD Finger. Mol.Cell, 28, 2007
3NQJ	Crystal structure of (CENP-A/H4)2 heterotetramer Descriptor: Histone H3-like centromeric protein A, Histone H4, PHOSPHATE ION Authors: Sekulic, N, Black, B.E. Deposit date: 2010-06-29 Release date: 2010-08-25 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.1 Å) Cite: The structure of (CENP-A-H4)(2) reveals physical features that mark centromeres. Nature, 467, 2010
2OX0	Crystal structure of JMJD2A complexed with histone H3 peptide dimethylated at Lys9 Descriptor: CHLORIDE ION, JmjC domain-containing histone demethylation protein 3A, N-OXALYLGLYCINE, ... Authors: Pilka, E.S, Ng, S.S, Kavanagh, K.L, McDonough, M.A, Savitsky, P, von Delft, F, Arrowsmith, C.H, Weigelt, J, Edwards, A, Sundstrom, M, Schofield, C.J, Oppermann, U, Structural Genomics Consortium (SGC) Deposit date: 2007-02-19 Release date: 2007-03-13 Last modified: 2025-03-26 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Crystal structures of histone demethylase JMJD2A reveal basis for substrate specificity. Nature, 448, 2007
5JJO	The crystal structure of immunity protein PA5088 from Pseudomonas aeruginosa Descriptor: GOLD ION, Uncharacterized protein Authors: Li, Z.Q, Gao, Z.Q, She, Z, Dong, Y.H. Deposit date: 2016-04-24 Release date: 2016-08-31 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (2.002 Å) Cite: Structural analysis of Pseudomonas aeruginosa H3-T6SS immunity proteins Febs Lett., 590, 2016
3NQU	Crystal structure of partially trypsinized (CENP-A/H4)2 heterotetramer Descriptor: Histone H3-like centromeric protein A, Histone H4, SULFATE ION Authors: Sekulic, N, Black, B.E. Deposit date: 2010-06-29 Release date: 2010-08-25 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.5 Å) Cite: The structure of (CENP-A-H4)(2) reveals physical features that mark centromeres. Nature, 467, 2010

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