PDB: 221716 resultsInfo pagesStatus searchChemie searchBIRD

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1D89	A DNA DODECAMER CONTAINING AN ADENINE TRACT CRYSTALLIZES IN A UNIQUE LATTICE AND EXHIBITS A NEW BEND Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*AP*AP*AP*AP*CP*G)-3'), DNA (5'-D(*CP*GP*TP*TP*TP*TP*TP*TP*CP*GP*CP*G)-3') Authors: DiGabriele, A.D, Steitz, T.A. Deposit date: 1992-07-17 Release date: 1993-07-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.3 Å) Cite: A DNA dodecamer containing an adenine tract crystallizes in a unique lattice and exhibits a new bend. J.Mol.Biol., 231, 1993
5WDK	A processive dipeptidyl aminopeptidase secreted from an established commensal bacterium P. distasonis Descriptor: 5-[(3aS,4R,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]-N-(2-oxopropyl)pentanamide, Aminopeptidase C, POTASSIUM ION Authors: Wolan, D.W, Xu, J.H, Solania, A, Chatterjee, S, Jiang, Z, ODonoghue, A.J. Deposit date: 2017-07-05 Release date: 2018-07-11 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.36 Å) Cite: A Commensal Dipeptidyl Aminopeptidase with Specificity for N-Terminal Glycine Degrades Human-Produced Antimicrobial Peptides in Vitro. Acs Chem.Biol., 13, 2018
6ES4	A cryptic RNA-binding domain mediates Syncrip recognition and exosomal partitioning of miRNA targets Descriptor: 1,2-ETHANEDIOL, SULFATE ION, Syncrip, ... Authors: Hobor, F, Dallmann, A, Ball, N.J, Cicchini, C, Battistelli, C, Ogrodowicz, R.W, Christodoulou, E, Martin, S.R, Castello, A, Tripodi, M, Taylor, I.A, Ramos, A. Deposit date: 2017-10-19 Release date: 2018-03-07 Method: X-RAY DIFFRACTION (2.2 Å) Cite: A cryptic RNA-binding domain mediates Syncrip recognition and exosomal partitioning of miRNA targets. Nat Commun, 9, 2018
5WDL	A processive dipeptidyl aminopeptidase secreted from an established commensal bacterium P. distasonis Descriptor: Aminopeptidase C, N-[(3S)-6-carbamimidamido-2-oxohexan-3-yl]glycinamide, POTASSIUM ION Authors: Wolan, D.W, Xu, J.H, Solania, A, Chatterjee, S, Jiang, Z, ODonoghue, A.J. Deposit date: 2017-07-05 Release date: 2018-07-11 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.625 Å) Cite: A Commensal Dipeptidyl Aminopeptidase with Specificity for N-Terminal Glycine Degrades Human-Produced Antimicrobial Peptides in Vitro. Acs Chem.Biol., 13, 2018
6E7G	Crystal structure of H5 hemagglutinin mutant Y161A from A/Viet Nam/1203/2004 H5N1 influenza virus Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin HA1 chain, ... Authors: Tzarum, N, Wilson, I.A. Deposit date: 2018-07-26 Release date: 2019-06-19 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (3.094 Å) Cite: N-Glycolylneuraminic Acid as a Receptor for Influenza A Viruses. Cell Rep, 27, 2019
1APB	A PRO TO GLY MUTATION IN THE HINGE OF THE ARABINOSE-BINDING PROTEIN ENHANCES BINDING AND ALTERS SPECIFICITY: SUGAR-BINDING AND CRYSTALLOGRAPHIC STUDIES Descriptor: L-ARABINOSE-BINDING PROTEIN, alpha-D-fucopyranose, beta-D-fucopyranose Authors: Vermersch, P.S, Tesmer, J.J.G, Quiocho, F.A. Deposit date: 1991-11-15 Release date: 1992-01-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.76 Å) Cite: A Pro to Gly mutation in the hinge of the arabinose-binding protein enhances binding and alters specificity. Sugar-binding and crystallographic studies. J.Biol.Chem., 265, 1990
6E7H	Crystal structure of H5 hemagglutinin mutant Y161A from A/Viet Nam/1203/2004 H5N1 influenza virus in complex with 3'-GcLN Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin HA1 chain, ... Authors: Tzarum, N, Wilson, I.A. Deposit date: 2018-07-26 Release date: 2019-06-19 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (3.3 Å) Cite: N-Glycolylneuraminic Acid as a Receptor for Influenza A Viruses. Cell Rep, 27, 2019
6CHA	STRUCTURE OF A TETRAHEDRAL TRANSITION STATE COMPLEX OF ALPHA-*CHYMOTRYPSIN AT 1.8-*ANGSTROMS RESOLUTION Descriptor: ALPHA-CHYMOTRYPSIN A, PHENYLETHANE BORONIC ACID Authors: Tulinsky, A, Blevins, R.A. Deposit date: 1987-02-06 Release date: 1987-04-16 Last modified: 2024-06-05 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structure of a tetrahedral transition state complex of alpha-chymotrypsin dimer at 1.8-A resolution. J.Biol.Chem., 262, 1987
1BAP	A PRO TO GLY MUTATION IN THE HINGE OF THE ARABINOSE-BINDING PROTEIN ENHANCES BINDING AND ALTERS SPECIFICITY: SUGAR-BINDING AND CRYSTALLOGRAPHIC STUDIES Descriptor: L-ARABINOSE-BINDING PROTEIN, alpha-L-arabinopyranose, beta-L-arabinopyranose Authors: Vermersch, P.S, Tesmer, J.J.G, Quiocho, F.A. Deposit date: 1991-11-15 Release date: 1992-01-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.75 Å) Cite: A Pro to Gly mutation in the hinge of the arabinose-binding protein enhances binding and alters specificity. Sugar-binding and crystallographic studies. J.Biol.Chem., 265, 1990
198D	A TRIGONAL FORM OF THE IDARUBICIN-D(CGATCG) COMPLEX: CRYSTAL AND MOLECULAR STRUCTURE AT 2.0 ANGSTROMS RESOLUTION Descriptor: DNA (5'-D(*CP*GP*AP*TP*CP*G)-3'), IDARUBICIN, SPERMINE Authors: Dautant, A, Langlois D'Estaintot, B, Gallois, B, Brown, T, Hunter, W.N. Deposit date: 1994-11-28 Release date: 1995-03-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.97 Å) Cite: A trigonal form of the idarubicin:d(CGATCG) complex; crystal and molecular structure at 2.0 A resolution. Nucleic Acids Res., 23, 1995
5LSW	A CAF40-binding motif facilitates recruitment of the CCR4-NOT complex to mRNAs targeted by Drosophila Roquin Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Cell differentiation protein RCD1 homolog, LD12033p, ... Authors: Sgromo, A, Raisch, T, Bawankar, P, Bhandari, D, Chen, Y, Kuzuoglu-Ozturk, D, Weichenrieder, O, Izaurralde, E. Deposit date: 2016-09-05 Release date: 2017-02-15 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.15 Å) Cite: A CAF40-binding motif facilitates recruitment of the CCR4-NOT complex to mRNAs targeted by Drosophila Roquin. Nat Commun, 8, 2017
1CSI	A very short hydrogen bond provides only moderate stabilization of an enzyme: inhibitor complex of citrate synthase Descriptor: CARBOXYMETHYLDETHIA COENZYME *A, CITRATE SYNTHASE, OXALOACETATE ION Authors: Usher, K.C, Remington, S.J. Deposit date: 1994-03-07 Release date: 1994-04-30 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.7 Å) Cite: A very short hydrogen bond provides only moderate stabilization of an enzyme-inhibitor complex of citrate synthase. Biochemistry, 33, 1994
1CPE	A CATION BINDING MOTIF STABILIZES THE COMPOUND I RADICAL OF CYTOCHROME C PEROXIDASE Descriptor: CYTOCHROME C PEROXIDASE, POTASSIUM ION, PROTOPORPHYRIN IX CONTAINING FE Authors: Miller, M.A, Han, G.W, Kraut, J. Deposit date: 1994-08-18 Release date: 1994-11-01 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.2 Å) Cite: A cation binding motif stabilizes the compound I radical of cytochrome c peroxidase. Proc.Natl.Acad.Sci.USA, 91, 1994
1CPG	A CATION BINDING MOTIF STABILIZES THE COMPOUND I RADICAL OF CYTOCHROME C PEROXIDASE Descriptor: CYTOCHROME C PEROXIDASE, POTASSIUM ION, PROTOPORPHYRIN IX CONTAINING FE Authors: Miller, M.A, Han, G.W, Kraut, J. Deposit date: 1994-08-18 Release date: 1994-11-01 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.2 Å) Cite: A cation binding motif stabilizes the compound I radical of cytochrome c peroxidase. Proc.Natl.Acad.Sci.USA, 91, 1994
1CSH	A very short hydrogen bond provides only moderate stabilization of an enzyme: inhibitor complex of citrate synthase Descriptor: AMIDOCARBOXYMETHYLDETHIA COENZYME *A, CITRATE SYNTHASE, OXALOACETATE ION Authors: Usher, K.C, Remington, S.J. Deposit date: 1994-03-07 Release date: 1994-04-30 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.65 Å) Cite: A very short hydrogen bond provides only moderate stabilization of an enzyme-inhibitor complex of citrate synthase. Biochemistry, 33, 1994
1B37	A 30 ANGSTROM U-SHAPED CATALYTIC TUNNEL IN THE CRYSTAL STRUCTURE OF POLYAMINE OXIDASE Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, FLAVIN-ADENINE DINUCLEOTIDE, PROTEIN (POLYAMINE OXIDASE), ... Authors: Binda, C, Coda, A, Angelini, R, Federico, R, Ascenzi, P, Mattevi, A. Deposit date: 1998-12-17 Release date: 1999-12-17 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.9 Å) Cite: A 30-angstrom-long U-shaped catalytic tunnel in the crystal structure of polyamine oxidase. Structure Fold.Des., 7, 1999
6RA0	A ubiquitin-like dimerization domain controls protein kinase D activation by trans-autophosphorylation Descriptor: Serine/threonine-protein kinase dkf-1, ZINC ION Authors: Elsner, D.J, Leonard, T.A. Deposit date: 2019-04-05 Release date: 2019-08-14 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (2.26 Å) Cite: A ubiquitin-like domain controls protein kinase D dimerization and activation by trans-autophosphorylation. J.Biol.Chem., 294, 2019
1ADD	A PRE-TRANSITION STATE MIMIC OF AN ENZYME: X-RAY STRUCTURE OF ADENOSINE DEAMINASE WITH BOUND 1-DEAZA-ADENOSINE AND ZINC-ACTIVATED WATER Descriptor: 1-DEAZA-ADENOSINE, ADENOSINE DEAMINASE, ZINC ION Authors: Wilson, D.K, Quiocho, F.A. Deposit date: 1992-12-22 Release date: 1994-01-31 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.4 Å) Cite: A pre-transition-state mimic of an enzyme: X-ray structure of adenosine deaminase with bound 1-deazaadenosine and zinc-activated water. Biochemistry, 32, 1993
1A8W	A K+ CATION-INDUCED CONFORMATIONAL SWITCH WITHIN A LOOP SPANNING SEGMENT OF A DNA QUADRUPLEX CONTAINING G-G-G-C REPEATS, NMR, 8 STRUCTURES Descriptor: DNA QUADRUPLEX CONTAINING GGGG TETRADS AND GC WATSON-CRICK BASE PAIRS Authors: Bouaziz, S, Kettani, A, Patel, D.J. Deposit date: 1998-03-28 Release date: 1998-10-14 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: A K cation-induced conformational switch within a loop spanning segment of a DNA quadruplex containing G-G-G-C repeats. J.Mol.Biol., 282, 1998
6RPJ	A Non-blocking anti-CTLA-4 Nanobody complexed with CTLA-4 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, A non-blocking CTLA-4 nanobody, Cytotoxic T-lymphocyte protein 4, ... Authors: Gao, H, Zhou, A, Zhang, F. Deposit date: 2019-05-14 Release date: 2020-07-08 Last modified: 2020-11-11 Method: X-RAY DIFFRACTION (3.25 Å) Cite: A Non-blocking anti-CTLA-4 Nanobody complexed with CTLA-4 To Be Published
1B5Q	A 30 ANGSTROM U-SHAPED CATALYTIC TUNNEL IN THE CRYSTAL STRUCTURE OF POLYAMINE OXIDASE Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, FLAVIN-ADENINE DINUCLEOTIDE, N,N'-BIS(2,3-BUTADIENYL)-1,4-BUTANE-DIAMINE, ... Authors: Binda, C, Coda, A, Angelini, R, Federico, R, Ascenzi, P, Mattevi, A. Deposit date: 1999-01-07 Release date: 2000-01-07 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.9 Å) Cite: A 30-angstrom-long U-shaped catalytic tunnel in the crystal structure of polyamine oxidase. Structure Fold.Des., 7, 1999
6F92	Structure of the family GH92 alpha-mannosidase BT3965 from Bacteroides thetaiotaomicron in complex with Mannoimidazole (ManI) Descriptor: (5R,6R,7S,8R)-5-(HYDROXYMETHYL)-5,6,7,8-TETRAHYDROIMIDAZO[1,2-A]PYRIDINE-6,7,8-TRIOL, 1,2-ETHANEDIOL, CALCIUM ION, ... Authors: Thompson, A.J, Spears, R.J, Zhu, Y, Suits, M.D.L, Williams, S.J, Gilbert, H.J, Davies, G.J. Deposit date: 2017-12-13 Release date: 2018-05-02 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Bacteroides thetaiotaomicron generates diverse alpha-mannosidase activities through subtle evolution of a distal substrate-binding motif. Acta Crystallogr D Struct Biol, 74, 2018
1CZ0	INTRON ENCODED HOMING ENDONUCLEASE I-PPOI/DNA COMPLEX LACKING CATALYTIC METAL ION Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), INTRON-ENCODED HOMING ENDONUCLEASE I-PPOI, SODIUM ION, ... Authors: Galburt, E.A, Chevalier, B, Jurica, M.S, Flick, K.E, Stoddard, B.L. Deposit date: 1999-08-31 Release date: 1999-11-19 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.1 Å) Cite: A novel endonuclease mechanism directly visualized for I-PpoI. Nat.Struct.Biol., 6, 1999
5B6Y	A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 36.2 us after photoexcitation Descriptor: 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, DECANE, ... Authors: Royant, A, Nango, E, Nakane, T, Tanaka, T, Arima, T, Neutze, R, Iwata, S. Deposit date: 2016-06-02 Release date: 2016-12-21 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.1 Å) Cite: A three-dimensional movie of structural changes in bacteriorhodopsin Science, 354, 2016
4XIS	A METAL-MEDIATED HYDRIDE SHIFT MECHANISM FOR XYLOSE ISOMERASE BASED ON THE 1.6 ANGSTROMS STREPTOMYCES RUBIGINOSUS STRUCTURES WITH XYLITOL AND D-XYLOSE Descriptor: D-xylose, MANGANESE (II) ION, XYLOSE ISOMERASE, ... Authors: Whitlow, M, Howard, A.J. Deposit date: 1991-03-25 Release date: 1992-07-15 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.6 Å) Cite: A metal-mediated hydride shift mechanism for xylose isomerase based on the 1.6 A Streptomyces rubiginosus structures with xylitol and D-xylose. Proteins, 9, 1991

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