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7BCR
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BU of 7bcr by Molmil
Crystal structure of the sugar acid binding protein DctPAm from Advenella mimigardefordensis strain DPN7T in complex with galactonate
Descriptor: L-galactonic acid, Putative TRAP transporter solute receptor DctP
Authors:Schaefer, L, Meinert, C, Kobus, S, Hoeppner, A, Smits, S.H, Steinbuechel, A.
Deposit date:2020-12-21
Release date:2021-04-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the sugar acid-binding protein CxaP from a TRAP transporter in Advenella mimigardefordensis strain DPN7 T .
Febs J., 288, 2021
3V5Z
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BU of 3v5z by Molmil
Structure of FBXL5 hemerythrin domain, C2 cell, grown anaerobically
Descriptor: F-box/LRR-repeat protein 5, MU-OXO-DIIRON
Authors:Tomchick, D.R, Bruick, R.K, Thompson, J.W, Brautigam, C.A.
Deposit date:2011-12-17
Release date:2012-01-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.1847 Å)
Cite:Structural and Molecular Characterization of Iron-sensing Hemerythrin-like Domain within F-box and Leucine-rich Repeat Protein 5 (FBXL5).
J.Biol.Chem., 287, 2012
4C7Z
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BU of 4c7z by Molmil
Aldehyde Oxidoreductase from Desulfovibrio gigas (MOP), activated with sodium dithionite and sodium sulfide
Descriptor: (MOLYBDOPTERIN-CYTOSINE DINUCLEOTIDE-S,S)-DIOXO-AQUA-MOLYBDENUM(V), ALDEHYDE OXIDOREDUCTASE, BICARBONATE ION, ...
Authors:Correia, H.D, Romao, M.J, Santos-Silva, T.
Deposit date:2013-09-27
Release date:2014-01-15
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Kinetic and Structural Studies of Aldehyde Oxidoreductase from Desulfovibrio Gigas Reveal a Dithiolene-Based Chemistry for Enzyme Activation and Inhibition by H2O2.
Plos One, 8, 2013
4C80
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BU of 4c80 by Molmil
Aldehyde Oxidoreductase from Desulfovibrio gigas (MOP), soaked with hydrogen peroxide
Descriptor: (MOLYBDOPTERIN-CYTOSINE DINUCLEOTIDE-S,S)-DIOXO-AQUA-MOLYBDENUM(V), ALDEHYDE OXIDOREDUCTASE, BICARBONATE ION, ...
Authors:Correia, H.D, Romao, M.J, Santos-Silva, T.
Deposit date:2013-09-27
Release date:2014-01-15
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Kinetic and Structural Studies of Aldehyde Oxidoreductase from Desulfovibrio Gigas Reveal a Dithiolene-Based Chemistry for Enzyme Activation and Inhibition by H2O2.
Plos One, 8, 2013
4C7Y
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BU of 4c7y by Molmil
Aldehyde Oxidoreductase from Desulfovibrio gigas (MOP), soaked with sodium dithionite and sodium sulfide
Descriptor: (MOLYBDOPTERIN-CYTOSINE DINUCLEOTIDE-S,S)-DIOXO-AQUA-MOLYBDENUM(V), ALDEHYDE OXIDOREDUCTASE, BICARBONATE ION, ...
Authors:Correia, H.D, Romao, M.J, Santos-Silva, T.
Deposit date:2013-09-27
Release date:2014-01-15
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Kinetic and Structural Studies of Aldehyde Oxidoreductase from Desulfovibrio Gigas Reveal a Dithiolene-Based Chemistry for Enzyme Activation and Inhibition by H2O2.
Plos One, 8, 2013
6R7N
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BU of 6r7n by Molmil
Structural basis of Cullin-2 RING E3 ligase regulation by the COP9 signalosome
Descriptor: COP9 signalosome complex subunit 1, COP9 signalosome complex subunit 2, COP9 signalosome complex subunit 3, ...
Authors:Faull, S.V, Lau, A.M.C, Martens, C, Ahdash, Z, Yebenes, H, Schmidt, C, Beuron, F, Cronin, N.B, Morris, E.P, Politis, A.
Deposit date:2019-03-29
Release date:2019-08-28
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (6.5 Å)
Cite:Structural basis of Cullin 2 RING E3 ligase regulation by the COP9 signalosome.
Nat Commun, 10, 2019
6R7H
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BU of 6r7h by Molmil
Structural basis of Cullin-2 RING E3 ligase regulation by the COP9 signalosome
Descriptor: COP9 signalosome complex subunit 1, COP9 signalosome complex subunit 2, COP9 signalosome complex subunit 3, ...
Authors:Faull, S.V, Lau, A.M.C, Beuron, F, Cronin, N.B, Morris, E.P, Politis, A.
Deposit date:2019-03-28
Release date:2019-08-28
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (8.8 Å)
Cite:Structural basis of Cullin 2 RING E3 ligase regulation by the COP9 signalosome.
Nat Commun, 10, 2019
6VR8
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BU of 6vr8 by Molmil
Structure of a pseudomurein peptide ligase type E from Methanothermus fervidus
Descriptor: 1,2-ETHANEDIOL, MAGNESIUM ION, Mur ligase middle domain protein, ...
Authors:Carbone, V, Schofield, L.R, Sutherland-Smith, A.J, Ronimus, R.S, Subedi, B.P.
Deposit date:2020-02-06
Release date:2021-08-11
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural characterisation of methanogen pseudomurein cell wall peptide ligases homologous to bacterial MurE/F murein peptide ligases.
Microbiology (Reading, Engl.), 168, 2022
1ZAU
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BU of 1zau by Molmil
Adenylation domain of NAD+ dependent DNA ligase from M.tuberculosis
Descriptor: ADENOSINE MONOPHOSPHATE, DNA ligase
Authors:Srivastava, S.K, Ramachandran, R.
Deposit date:2005-04-07
Release date:2005-07-05
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:NAD+-dependent DNA Ligase (Rv3014c) from Mycobacterium tuberculosis: CRYSTAL STRUCTURE OF THE ADENYLATION DOMAIN AND IDENTIFICATION OF NOVEL INHIBITORS
J.Biol.Chem., 280, 2005
2MXS
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BU of 2mxs by Molmil
Solution NMR-structure of the neomycin sensing riboswitch RNA bound to paromomycin
Descriptor: PAROMOMYCIN, RNA (27-MER)
Authors:Schmidtke, S, Duchardt-Ferner, E, Ohlenschlaeger, O, Gottstein, D, Wohnert, J.
Deposit date:2015-01-14
Release date:2015-12-09
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:What a Difference an OH Makes: Conformational Dynamics as the Basis for the Ligand Specificity of the Neomycin-Sensing Riboswitch.
Angew.Chem.Int.Ed.Engl., 55, 2016
5XMJ
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BU of 5xmj by Molmil
Crystal structure of quinol:fumarate reductase from Desulfovibrio gigas
Descriptor: DODECYL-BETA-D-MALTOSIDE, FE2/S2 (INORGANIC) CLUSTER, FE3-S4 CLUSTER, ...
Authors:Guan, H.H, Hsieh, Y.C, Lin, P.R, Chen, C.J.
Deposit date:2017-05-15
Release date:2018-06-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structural insights into the electron/proton transfer pathways in the quinol:fumarate reductase from Desulfovibrio gigas.
Sci Rep, 8, 2018
6TTU
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BU of 6ttu by Molmil
Ubiquitin Ligation to substrate by a cullin-RING E3 ligase at 3.7A resolution: NEDD8-CUL1-RBX1 N98R-SKP1-monomeric b-TRCP1dD-IkBa-UB~UBE2D2
Descriptor: CYS-LYS-LYS-ALA-ARG-HIS-ASP-SEP-GLY, Cullin-1, E3 ubiquitin-protein ligase RBX1, ...
Authors:Baek, K, Prabu, J.R, Schulman, B.A.
Deposit date:2019-12-30
Release date:2020-02-12
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:NEDD8 nucleates a multivalent cullin-RING-UBE2D ubiquitin ligation assembly.
Nature, 578, 2020
2OWO
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BU of 2owo by Molmil
Last Stop on the Road to Repair: Structure of E.coli DNA Ligase Bound to Nicked DNA-Adenylate
Descriptor: 26-MER, 5'-D(*AP*CP*AP*AP*TP*TP*GP*CP*GP*AP*CP*(OMC)P*C)-3', 5'-D(*CP*AP*CP*TP*AP*TP*CP*GP*GP*AP*AP*TP*G)-3', ...
Authors:Shuman, S, Nandakumar, J, Nair, P.A.
Deposit date:2007-02-16
Release date:2007-05-15
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Last Stop on the Road to Repair: Structure of E. coli DNA Ligase Bound to Nicked DNA-Adenylate.
Mol.Cell, 26, 2007
6NHX
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BU of 6nhx by Molmil
mycobacterial DNA ligase D complexed with ATP and MES
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ADENOSINE-5'-TRIPHOSPHATE, ATP-dependent DNA ligase
Authors:Shuman, S, Unciuleac, M, Goldgur, Y.
Deposit date:2018-12-24
Release date:2019-02-13
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structures of ATP-bound DNA ligase D in a closed domain conformation reveal a network of amino acid and metal contacts to the ATP phosphates.
J. Biol. Chem., 294, 2019
2CFM
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BU of 2cfm by Molmil
ATP-DEPENDENT DNA LIGASE FROM PYROCOCCUS FURIOSUS
Descriptor: ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, THERMOSTABLE DNA LIGASE
Authors:Nishida, H, Ishino, Y, Morikawa, K.
Deposit date:2006-02-22
Release date:2006-07-12
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Closed Structure of an Archaeal DNA Ligase from Pyrococcus Furiosus.
J.Mol.Biol., 360, 2006
8IVI
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BU of 8ivi by Molmil
crystal structure of a medium-long chain fatty acyl-CoA ligase
Descriptor: Medium/long-chain-fatty-acid--CoA ligase FadD8
Authors:Li, S.
Deposit date:2023-03-27
Release date:2024-02-14
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Structural study of medium-long chain fatty acyl-CoA ligase FadD8 from Mycobacterium tuberculosis.
Biochem.Biophys.Res.Commun., 672, 2023
6NHZ
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BU of 6nhz by Molmil
mycobacterial DNA ligase D complexed with ATP and Mg
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, ATP-dependent DNA ligase, MAGNESIUM ION
Authors:Shuman, S, Unciuleac, M, Goldgur, Y.
Deposit date:2018-12-24
Release date:2019-02-13
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structures of ATP-bound DNA ligase D in a closed domain conformation reveal a network of amino acid and metal contacts to the ATP phosphates.
J. Biol. Chem., 294, 2019
5XMC
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BU of 5xmc by Molmil
Crystal structure of the auto-inhibited Nedd4 family E3 ligase Itch
Descriptor: E3 ubiquitin-protein ligase Itchy
Authors:Shan, Z, Wen, W.
Deposit date:2017-05-13
Release date:2017-08-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Allosteric auto-inhibition and activation of the Nedd4 family E3 ligase Itch
EMBO Rep., 18, 2017
2DTI
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BU of 2dti by Molmil
Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii OT3 in Complex with Biotinyl-5'-AMP, Pyrophosphate and Mn(2+)
Descriptor: 235aa long hypothetical biotin-[acetyl-CoA-carboxylase] ligase, BIOTINYL-5-AMP, MANGANESE (II) ION, ...
Authors:Bagautdinov, B, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-07-12
Release date:2007-01-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Ligand Structures Of Biotin Protein Ligase From Pyrococcus Horikoshii OT3
To be Published
5D1P
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BU of 5d1p by Molmil
Archaeal ATP-dependent RNA ligase - form 2
Descriptor: ATP-dependent RNA ligase, MAGNESIUM ION, SULFATE ION
Authors:Murakami, K.S.
Deposit date:2015-08-04
Release date:2016-03-09
Last modified:2025-04-02
Method:X-RAY DIFFRACTION (2.199 Å)
Cite:Structural and mutational analysis of archaeal ATP-dependent RNA ligase identifies amino acids required for RNA binding and catalysis.
Nucleic Acids Res., 44, 2016
2DKG
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BU of 2dkg by Molmil
Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii OT3 in Complex with Biotinyl-5'-AMP, Pyrophosphate and Mg(2+)
Descriptor: 235aa long hypothetical biotin-[acetyl-CoA-carboxylase] ligase, BIOTINYL-5-AMP, MAGNESIUM ION, ...
Authors:Bagautdinov, B, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-04-11
Release date:2006-10-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Ligand Structures Of Biotin Protein Ligase From Pyrococcus Horikoshii Ot3
To be Published
6MKB
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BU of 6mkb by Molmil
Crystal structure of murine 4-1BB ligand
Descriptor: SODIUM ION, SULFATE ION, Tumor necrosis factor ligand superfamily member 9, ...
Authors:Bitra, A, Zajonc, D.M, Doukov, T.
Deposit date:2018-09-25
Release date:2018-12-19
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the m4-1BB/4-1BBL complex reveals an unusual dimeric ligand that undergoes structural changes upon 4-1BB receptor binding.
J. Biol. Chem., 294, 2019
6DT1
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BU of 6dt1 by Molmil
Crystal structure of the ligase from bacteriophage T4 complexed with DNA intermediate
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, ADENOSINE MONOPHOSPHATE, CHLORIDE ION, ...
Authors:Shi, K, Aihara, H.
Deposit date:2018-06-14
Release date:2018-09-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:T4 DNA ligase structure reveals a prototypical ATP-dependent ligase with a unique mode of sliding clamp interaction.
Nucleic Acids Res., 46, 2018
7KR4
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BU of 7kr4 by Molmil
Human DNA Ligase 1(E346A/E592A) Bound to a nicked DNA substrate control duplex
Descriptor: ACETATE ION, ADENOSINE MONOPHOSPHATE, DNA (5'-D(*AP*AP*TP*GP*TP*CP*TP*GP*CP*CP*C)-3'), ...
Authors:Tumbale, P.P, Williams, R.S.
Deposit date:2020-11-18
Release date:2021-02-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:High-fidelity DNA ligation enforces accurate Okazaki fragment maturation during DNA replication.
Nat Commun, 12, 2021
3L2P
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BU of 3l2p by Molmil
Human DNA Ligase III Recognizes DNA Ends by Dynamic Switching Between Two DNA Bound States
Descriptor: 5'-D(*GP*CP*CP*AP*GP*TP*CP*CP*GP*AP*CP*GP*AP*CP*GP*CP*AP*TP*CP*CP*CP*G)-3', 5'-D(*GP*TP*CP*GP*GP*AP*CP*TP*G)-3', 5'-D(P*CP*GP*GP*GP*AP*TP*GP*CP*GP*TP*C)-3', ...
Authors:Cotner-Gohara, E.A, Kim, I.K, Hammel, M, Tainer, J.A, Tomkinson, A, Ellenberger, T.
Deposit date:2009-12-15
Release date:2010-07-14
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3 Å)
Cite:Human DNA Ligase III Recognizes DNA Ends by Dynamic Switching between Two DNA-Bound States.
Biochemistry, 49, 2010

238582

數據於2025-07-09公開中

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