5D1P

Archaeal ATP-dependent RNA ligase - form 2

Summary for 5D1P

Related5D1O
DescriptorATP-dependent RNA ligase, SULFATE ION, MAGNESIUM ION, ... (4 entities in total)
Functional Keywordsatp-dependent rna ligase, archaea, ligase
Biological sourceMethanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
Total number of polymer chains2
Total molecular weight86986.57
Authors
Murakami, K.S. (deposition date: 2015-08-04, release date: 2016-03-09, Last modification date: 2016-03-30)
Primary citation
Gu, H.,Yoshinari, S.,Ghosh, R.,Ignatochkina, A.V.,Gollnick, P.D.,Murakami, K.S.,Ho, C.K.
Structural and mutational analysis of archaeal ATP-dependent RNA ligase identifies amino acids required for RNA binding and catalysis.
Nucleic Acids Res., 44:2337-2347, 2016
PubMed: 26896806 (PDB entries with the same primary citation)
DOI: 10.1093/nar/gkw094
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.199 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.24461.1%3.2%3.5%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution