PDB: 1550 resultsInfo pagesStatus searchChemie searchBIRD

---

7CJB	VHL recognizes hydroxyproline in RIPK1 Descriptor: Elongin-B, Elongin-C, GLYCEROL, ... Authors: Liu, J, Wang, Y, Pan, L. Deposit date: 2020-07-09 Release date: 2021-07-14 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.8 Å) Cite: VHL recognizes hydroxyproline in RIPK1 To Be Published
7DNJ	K63-polyUb MDA5CARDs complex Descriptor: Interferon-induced helicase C domain-containing protein 1, Ubiquitin Authors: Song, B, Chen, Y, Luo, D.H, Zheng, J. Deposit date: 2020-12-09 Release date: 2021-10-13 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Ordered assembly of the cytosolic RNA-sensing MDA5-MAVS signaling complex via binding to unanchored K63-linked poly-ubiquitin chains. Immunity, 54, 2021
7DNI	MDA5 CARDs-MAVS CARD polyUb complex Descriptor: Interferon-induced helicase C domain-containing protein 1, Mitochondrial antiviral-signaling protein, Ubiquitin Authors: Song, B, Chen, Y, Luo, D.H, Zheng, J. Deposit date: 2020-12-09 Release date: 2021-10-13 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Ordered assembly of the cytosolic RNA-sensing MDA5-MAVS signaling complex via binding to unanchored K63-linked poly-ubiquitin chains. Immunity, 54, 2021
4FBJ	Structure of the Cif:Nedd8 complex - Photorhabdus luminescens Cycle Inhibiting Factor in complex with human Nedd8 Descriptor: CHLORIDE ION, Hypothetical protein, NEDD8 Authors: Crow, A, Banfield, M.J. Deposit date: 2012-05-23 Release date: 2012-06-20 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.6 Å) Cite: The molecular basis of Nedd8 deamidation by the bacterial effector protein Cif Proc.Natl.Acad.Sci.USA, 2012
4FN2	Crystal structure of a SMT fusion Peptidyl-prolyl cis-trans isomerase with surface mutation D44G from Burkholderia pseudomallei complexed with CJ37 Descriptor: Ubiquitin-like protein SMT3, Peptidyl-prolyl cis-trans isomerase, ethyl (2S)-1-(benzylsulfonyl)piperidine-2-carboxylate Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2012-06-19 Release date: 2012-08-01 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.95 Å) Cite: A structural biology approach enables the development of antimicrobials targeting bacterial immunophilins. Antimicrob.Agents Chemother., 58, 2014
4G50	Crystal structure of a SMT fusion Peptidyl-prolyl cis-trans isomerase with surface mutation D44G from Burkholderia pseudomallei complexed with CJ168 Descriptor: 1,2-ETHANEDIOL, 3-(3,4,5-trimethoxyphenyl)propyl (2S)-1-(benzylsulfonyl)piperidine-2-carboxylate, FORMIC ACID, ... Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2012-07-17 Release date: 2012-08-01 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.75 Å) Cite: A structural biology approach enables the development of antimicrobials targeting bacterial immunophilins. Antimicrob.Agents Chemother., 58, 2014
4FJV	Crystal Structure of Human Otubain2 and Ubiquitin Complex Descriptor: ETHANAMINE, GLYCEROL, Polyubiquitin-C, ... Authors: Altun, M, Walter, T.S, Kramer, H.B, Iphofer, A, David, Y, Komsany, A, Ternette, N, Nicholson, B, Navon, A, Stuart, D.I, Ren, J, Kessler, B.M. Deposit date: 2012-06-12 Release date: 2013-06-12 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.047 Å) Cite: The human otubain2-ubiquitin structure provides insights into the cleavage specificity of poly-ubiquitin-linkages. Plos One, 10, 2015
4GGQ	Crystal structure of a SMT fusion Peptidyl-prolyl cis-trans isomerase from Burkholderia pseudomallei complexed with CJ40 Descriptor: 3-(3,4,5-trimethoxyphenyl)propyl (2S)-1-(benzylsulfonyl)piperidine-2-carboxylate, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ... Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2012-08-07 Release date: 2012-08-15 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.95 Å) Cite: A structural biology approach enables the development of antimicrobials targeting bacterial immunophilins. Antimicrob.Agents Chemother., 58, 2014
4GIV	Crystal structure of a SMT fusion Peptidyl-prolyl cis-trans isomerase with surface mutation D44G from Burkholderia pseudomallei complexed with CJ183 Descriptor: 3-(pyridin-3-yl)propyl (2S)-1-[(3-nitrophenyl)sulfonyl]piperidine-2-carboxylate, FORMIC ACID, Ubiquitin-like protein SMT3, ... Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2012-08-09 Release date: 2012-09-05 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.45 Å) Cite: A structural biology approach enables the development of antimicrobials targeting bacterial immunophilins. Antimicrob.Agents Chemother., 58, 2014
4F8C	Structure of the Cif:Nedd8 complex - Yersinia pseudotuberculosis Cycle Inhibiting Factor in complex with human Nedd8 Descriptor: 1,2-ETHANEDIOL, Cycle Inhibiting Factor, NEDD8 Authors: Crow, A, Banfield, M. Deposit date: 2012-05-17 Release date: 2012-06-20 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.95 Å) Cite: The molecular basis of Nedd8 deamidation by the bacterial effector protein Cif Proc.Natl.Acad.Sci.USA, 2012
4HCN	Crystal structure of Burkholderia pseudomallei effector protein CHBP in complex with ubiquitin Descriptor: DI(HYDROXYETHYL)ETHER, FORMIC ACID, PHOSPHATE ION, ... Authors: Yao, Q, Cui, J, Zhu, Y, Shao, F. Deposit date: 2012-09-30 Release date: 2012-11-21 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structural mechanism of ubiquitin and NEDD8 deamidation catalyzed by bacterial effectors that induce macrophage-specific apoptosis. Proc.Natl.Acad.Sci.USA, 109, 2012
4HCP	crystal structure of Burkholderia pseudomallei effector protein chbp in complex with nedd8 Descriptor: GLYCEROL, NEDD8, Putative ATP/GTP binding protein, ... Authors: Yao, Q, Shao, F. Deposit date: 2012-10-01 Release date: 2012-11-21 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.52 Å) Cite: Structural mechanism of ubiquitin and NEDD8 deamidation catalyzed by bacterial effectors that induce macrophage-specific apoptosis. Proc.Natl.Acad.Sci.USA, 109, 2012
1R4M	APPBP1-UBA3-NEDD8, an E1-ubiquitin-like protein complex Descriptor: Ubiquitin-like protein NEDD8, ZINC ION, amyloid beta precursor protein-binding protein 1, ... Authors: Walden, H, Podgorski, M.S, Holton, J.M, Schulman, B.A. Deposit date: 2003-10-07 Release date: 2003-12-23 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (3 Å) Cite: The structure of the APPBP1-UBA3-NEDD8-ATP complex reveals the basis for selective ubiquitin-like protein activation by an E1. Mol.Cell, 12, 2003
1UEL	Solution structure of ubiquitin-like domain of hHR23B complexed with ubiquitin-interacting motif of proteasome subunit S5a Descriptor: 26S proteasome non-ATPase regulatory subunit 4, UV excision repair protein RAD23 homolog B Authors: Fujiwara, K, Tenno, T, Jee, J.G, Sugasawa, K, Ohki, I, Kojima, C, Tochio, H, Hiroaki, H, Hanaoka, H, Shirakawa, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2003-05-19 Release date: 2004-02-10 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: Structure of the Ubiquitin-interacting Motif of S5a Bound to the Ubiquitin-like Domain of HR23B J.Biol.Chem., 279, 2004
1R4N	APPBP1-UBA3-NEDD8, an E1-ubiquitin-like protein complex with ATP Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Ubiquitin-like protein NEDD8, ZINC ION, ... Authors: Walden, H, Podgorski, M.S, Holton, J.M, Schulman, B.A. Deposit date: 2003-10-07 Release date: 2003-12-23 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (3.6 Å) Cite: The structure of the APPBP1-UBA3-NEDD8-ATP complex reveals the basis for selective ubiquitin-like protein activation by an E1. Mol.Cell, 12, 2003
1S1Q	TSG101(UEV) domain in complex with Ubiquitin Descriptor: ACETIC ACID, COPPER (II) ION, SULFATE ION, ... Authors: Sundquist, W.I, Schubert, H.L, Kelly, B.N, Hill, G.C, Holton, J.M, Hill, C.P. Deposit date: 2004-01-07 Release date: 2004-05-04 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2 Å) Cite: Ubiquitin recognition by the human TSG101 protein Mol.Cell, 13, 2004
1UZX	A complex of the Vps23 UEV with ubiquitin Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, SULFATE ION, UBIQUITIN, ... Authors: Teo, H, Williams, R.L. Deposit date: 2004-03-18 Release date: 2004-03-30 Last modified: 2017-07-05 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Structural Insights Into Endosomal Sorting Complex Required for Transport (Escrt-I) Recognition of Ubiquitinated Proteins J.Biol.Chem., 279, 2004
1VCB	THE VHL-ELONGINC-ELONGINB STRUCTURE Descriptor: PROTEIN (ELONGIN B), PROTEIN (ELONGIN C), PROTEIN (VHL) Authors: Stebbins, C.E, Kaelin, W.G, Pavletich, N.P. Deposit date: 1999-03-13 Release date: 1999-04-21 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structure of the VHL-ElonginC-ElonginB complex: implications for VHL tumor suppressor function. Science, 284, 1999
4ZFR	Catalytic domain of Sst2 F403A mutant bound to ubiquitin Descriptor: 1,2-ETHANEDIOL, AMSH-like protease sst2, ZINC ION, ... Authors: Shrestha, R.K. Deposit date: 2015-04-21 Release date: 2015-10-14 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.72 Å) Cite: Structure of Catalytic domain of Sst2 F403A mutant bound to ubiquitin at 1.7 Angstroms To Be Published
4ZFT	Catalytic domain of Sst2 F403W mutant bound to ubiquitin Descriptor: 1,2-ETHANEDIOL, AMSH-like protease sst2, Polyubiquitin-B, ... Authors: Bueno, A.N. Deposit date: 2015-04-21 Release date: 2015-10-14 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.304 Å) Cite: Structure of the catalytic domain of Sst2 mutant F403W bound to ubiquitin at 2.3 Angstroms To Be Published
5B83	Crystal structure of Optineurin UBAN in complex with linear ubiquitin Descriptor: Optineurin, tetra ubiquitin Authors: Ishii, R, Nureki, O. Deposit date: 2016-06-12 Release date: 2016-09-07 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.694 Å) Cite: Linear ubiquitination is involved in the pathogenesis of optineurin-associated amyotrophic lateral sclerosis Nat Commun, 7, 2016
4ZYN	Crystal Structure of Parkin E3 ubiquitin ligase (linker deletion; delta 86-130) Descriptor: E3 ubiquitin-protein ligase parkin, SULFATE ION, ZINC ION Authors: Lilov, A, Sauve, V, Trempe, J.F, Rodionov, D, Wang, J, Gehring, K. Deposit date: 2015-05-21 Release date: 2015-08-19 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.54 Å) Cite: A Ubl/ubiquitin switch in the activation of Parkin. Embo J., 34, 2015
5AF6	Structure of Lys33-linked diUb bound to Trabid NZF1 Descriptor: TRABID, UBIQUITIN, ZINC ION Authors: Michel, M.A, Elliott, P.R, Swatek, K.N, Simicek, M, Pruneda, J.N, Wagstaff, J.L, Freund, S.M.V, Komander, D. Deposit date: 2015-01-19 Release date: 2015-03-25 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Assembly and Specific Recognition of K29- and K33-Linked Polyubiquitin. Mol.Cell, 58, 2015
2ZVN	NEMO CoZi domain incomplex with diubiquitin in P212121 space group Descriptor: NF-kappa-B essential modulator, UBC protein Authors: Rahighi, S, Ikeda, F, Kawasaki, M, Akutsu, M, Suzuki, N, Kato, R, Kensche, T, Uejima, T, Bloor, S, Komander, D, Randow, F, Wakatsuki, S, Dikic, I. Deposit date: 2008-11-12 Release date: 2009-03-24 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (3 Å) Cite: Specific recognition of linear ubiquitin chains by NEMO is important for NF-kappaB activation Cell(Cambridge,Mass.), 136, 2009
2ZVO	NEMO CoZi domain in complex with diubiquitin in C2 space group Descriptor: NF-kappa-B essential modulator, UBC protein Authors: Rahighi, S, Ikeda, F, Kawasaki, M, Akutsu, M, Suzuki, N, Kato, R, Kensche, T, Uejima, T, Bloor, S, Komander, D, Randow, F, Wakatsuki, S, Dikic, I. Deposit date: 2008-11-12 Release date: 2009-03-24 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Specific recognition of linear ubiquitin chains by NEMO is important for NF-kappaB activation Cell(Cambridge,Mass.), 136, 2009

<11121314151617181920212223242526>