PDB: 221716 resultsInfo pagesStatus searchChemie searchBIRD

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8TO2	Bottom cylinder of high-resolution phycobilisome quenched by OCP (local refinement) Descriptor: Allophycocyanin alpha chain, Allophycocyanin beta chain, Allophycocyanin subunit alpha-B, ... Authors: Sauer, P.V, Sutter, M, Cupellini, L. Deposit date: 2023-08-02 Release date: 2024-04-17 Method: ELECTRON MICROSCOPY (2 Å) Cite: Structural and quantum chemical basis for OCP-mediated quenching of phycobilisomes. Sci Adv, 10, 2024
8TO0	48-nm repeating structure of doublets from mouse sperm flagella Descriptor: Cilia- and flagella- associated protein 210, Cilia- and flagella-associated protein 107, Cilia- and flagella-associated protein 141, ... Authors: Chen, Z, Shiozak, M, Hass, K.M, Skinner, W, Zhao, S, Guo, C, Polacco, B.J, Yu, Z, Krogan, N.J, Kaake, R.M, Vale, R.D, Agard, D.A. Deposit date: 2023-08-02 Release date: 2023-11-01 Last modified: 2023-11-22 Method: ELECTRON MICROSCOPY (7.7 Å) Cite: De novo protein identification in mammalian sperm using in situ cryoelectron tomography and AlphaFold2 docking. Cell, 186, 2023
8TNY	Substrate Binding Plasticity Revealed by Cryo-EM Structures of SLC26A2 Descriptor: SULFATE ION, Sulfate transporter Authors: Hu, W, Song, A. Deposit date: 2023-08-02 Release date: 2024-05-22 Method: ELECTRON MICROSCOPY (3.55 Å) Cite: Substrate binding plasticity revealed by Cryo-EM structures of SLC26A2. Nat Commun, 15, 2024
8TNX	Substrate Binding Plasticity Revealed by Cryo-EM Structures of SLC26A2 Descriptor: OXALATE ION, Sulfate transporter Authors: Hu, W, Song, A. Deposit date: 2023-08-02 Release date: 2024-05-22 Method: ELECTRON MICROSCOPY (3.03 Å) Cite: Substrate binding plasticity revealed by Cryo-EM structures of SLC26A2. Nat Commun, 15, 2024
8TNW	Substrate Binding Plasticity Revealed by Cryo-EM Structures of SLC26A2 Descriptor: CHLORIDE ION, Sulfate transporter Authors: Hu, W, Song, A. Deposit date: 2023-08-02 Release date: 2024-05-22 Method: ELECTRON MICROSCOPY (3.17 Å) Cite: Substrate binding plasticity revealed by Cryo-EM structures of SLC26A2. Nat Commun, 15, 2024
8TNV	Hemocyanin Functional Unit CCHB-g of Concholepas concholepas Descriptor: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Munoz, S, Vallejos-Baccelliere, G, Manubens, A, Salazar, M, Nascimento, A.F.Z, Ambrosio, A.L.B, Becker, M.I, Guixe, V, Castro-Fernandez, V. Deposit date: 2023-08-02 Release date: 2024-04-10 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Structural insights into a functional unit from an immunogenic mollusk hemocyanin. Structure, 32, 2024
8TNT	Crystal structure of Epstein-Barr virus gH/gL/gp42 in complex with antibodies F-2-1 and 769C2 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 769C2 heavy chain, 769C2 light chain, ... Authors: Bu, W, Kumar, A, Board, N, Kim, J, Dowdell, K, Zhang, S, Lei, Y, Hostal, A, Krogmann, T, Wang, Y, Pittaluga, S, Marcotrigiano, J, Cohen, J.I. Deposit date: 2023-08-02 Release date: 2024-03-27 Method: X-RAY DIFFRACTION (3.15 Å) Cite: Epstein-Barr virus gp42 antibodies reveal sites of vulnerability for receptor binding and fusion to B cells. Immunity, 57, 2024
8TNS	Solution structure of poly(UG) RNA (GU)12 G-quadruplex Descriptor: RNA (5'-R(*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*U)-3') Authors: Escobar, C.A, Petersen, R, Butcher, S.E. Deposit date: 2023-08-02 Release date: 2023-11-15 Last modified: 2024-05-15 Method: SOLUTION NMR, SOLUTION SCATTERING Cite: Solution Structure of Poly(UG) RNA. J.Mol.Biol., 435, 2023
8TNR	Cryo-EM structure of DDB1dB:CRBN:PT-179:SD40, conformation 2 Descriptor: 2-[(3S)-2,6-dioxopiperidin-3-yl]-5-(morpholin-4-yl)-1H-isoindole-1,3(2H)-dione, DNA damage-binding protein 1, Maltose/maltodextrin-binding periplasmic protein,SD40, ... Authors: Roy Burman, S.S, Hunkeler, M, Fischer, E.S. Deposit date: 2023-08-02 Release date: 2024-03-13 Last modified: 2024-04-03 Method: ELECTRON MICROSCOPY (2.5 Å) Cite: Continuous evolution of compact protein degradation tags regulated by selective molecular glues. Science, 383, 2024
8TNQ	Cryo-EM structure of DDB1dB:CRBN:PT-179:SD40, conformation 1 Descriptor: 2-[(3S)-2,6-dioxopiperidin-3-yl]-5-(morpholin-4-yl)-1H-isoindole-1,3(2H)-dione, DNA damage-binding protein 1, Maltose/maltodextrin-binding periplasmic protein,SD40, ... Authors: Roy Burman, S.S, Hunkeler, M, Fischer, E.S. Deposit date: 2023-08-02 Release date: 2024-03-13 Last modified: 2024-04-03 Method: ELECTRON MICROSCOPY (2.41 Å) Cite: Continuous evolution of compact protein degradation tags regulated by selective molecular glues. Science, 383, 2024
8TNP	Cryo-EM structure of DDB1dB:CRBN:Pomalidomide:SD40 Descriptor: DNA damage-binding protein 1, Maltose/maltodextrin-binding periplasmic protein,SD40, Protein cereblon, ... Authors: Roy Burman, S.S, Hunkeler, M, Fischer, E.S. Deposit date: 2023-08-02 Release date: 2024-03-13 Last modified: 2024-04-03 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Continuous evolution of compact protein degradation tags regulated by selective molecular glues. Science, 383, 2024
8TNO	UNC_239 from Chroma generative model Descriptor: UNC_239 Authors: Ng-Thow-Hing, C, Van Vlack, E.R, Lord, D.M. Deposit date: 2023-08-02 Release date: 2023-11-22 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.36 Å) Cite: Illuminating protein space with a programmable generative model. Nature, 623, 2023
8TNN	Crystal structure of Epstein-Barr virus gH/gL/gp42 in complex with gp42 antibody A10 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, A10 heavy chain, A10 light chain, ... Authors: Bu, W, Kumar, A, Board, N, Kim, J, Dowdell, K, Zhang, S, Lei, Y, Hostal, A, Krogmann, T, Wang, Y, Pittaluga, S, Marcotrigiano, J, Cohen, J.I. Deposit date: 2023-08-02 Release date: 2024-03-27 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (3.36 Å) Cite: Epstein-Barr virus gp42 antibodies reveal sites of vulnerability for receptor binding and fusion to B cells. Immunity, 57, 2024
8TNM	UNC_079 from Chroma generative model Descriptor: UNC_079 Authors: Ng-Thow-Hing, C, Van Vlack, E.R, Lord, D.M. Deposit date: 2023-08-02 Release date: 2023-11-22 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.1 Å) Cite: Illuminating protein space with a programmable generative model. Nature, 623, 2023
8TNL	CryoEM structure of H7 hemagglutinin from A/Shanghai2/2013 H7N9 in complex with a human neutralizing antibody H7.HK1 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, H7.HK1 Neutralizing Antibody Heavy Chain, Hemagglutinin Authors: Morano, N.C, Wu, X, Shapiro, L. Deposit date: 2023-08-02 Release date: 2024-05-15 Method: ELECTRON MICROSCOPY (3.62 Å) Cite: CryoEM structure of H7 hemagglutinin from A/Shanghai2/2013 H7N9 in complex with a human neutralizing antibody H7.HK1 To Be Published
8TNK	The crystal structure of the T252E mutant of CYP199A4 bound to 4-benzylbenzoic acid Descriptor: 4-benzylbenzoic acid, CHLORIDE ION, Cytochrome P450, ... Authors: Podgorski, M.N, Bell, S.G. Deposit date: 2023-08-02 Release date: 2023-10-25 Method: X-RAY DIFFRACTION (1.79 Å) Cite: Characterisation of the heme aqua-ligand coordination environment in an engineered peroxygenase cytochrome P450 variant. J.Inorg.Biochem., 249, 2023
8TNI	Cryo-EM structure of HIV-1 Env BG505 DS-SOSIP in complex with broadly neutralizing bi-specific antibody CAP256L-R27 targeting the CD4-binding site and the V2-apex Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HIV-1 BG505 DS-SOSIP gp120, ... Authors: Zhou, T, Morano, N.C, Roark, R.S, Kwong, P.D, Xu, J. Deposit date: 2023-08-01 Release date: 2024-05-08 Method: ELECTRON MICROSCOPY (3.61 Å) Cite: Cryo-EM structure of HIV-1 Env BG505 DS-SOSIP in complex with broadly neutralizing bi-specific antibody CAP256L-R27 targeting the CD4-binding site and the V2-apex To Be Published
8TNH	Cryo-EM structure of HIV-1 Env BG505 DS-SOSIP in complex with broadly neutralizing llama nanobody G36 targeting the CD4-binding site Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CD4-binding site nanobody G36, ... Authors: Zhou, T, Kwong, P.D, Xu, J. Deposit date: 2023-08-01 Release date: 2024-05-08 Method: ELECTRON MICROSCOPY (3.32 Å) Cite: Cryo-EM structure of HIV-1 Env BG505 DS-SOSIP in complex with broadly neutralizing llama nanobody G36 targeting the CD4-binding site To Be Published
8TNG	Cryo-EM structure of HIV-1 Env BG505 DS-SOSIP in complex with broadly neutralizing llama nanobody R27 targeting the CD4-binding site Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CD4-binding site targeting nanobody R27, ... Authors: Zhou, T, Kwong, P.D, Xu, J. Deposit date: 2023-08-01 Release date: 2024-05-08 Method: ELECTRON MICROSCOPY (3.58 Å) Cite: Cryo-EM structure of HIV-1 Env BG505 DS-SOSIP in complex with broadly neutralizing llama nanobody R27 targeting the CD4-binding site To Be Published
8TNE	Crystal structure of bacterial pectin methylesterase Pme8A from rumen Butyrivibrio Descriptor: 1,2-ETHANEDIOL, Pectinesterase Authors: Carbone, V, Reilly, K, Sang, C, Schofield, L, Ronimus, R, Kelly, W.J, Attwood, G.T, Palevich, N. Deposit date: 2023-08-01 Release date: 2023-08-16 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Crystal Structures of Bacterial Pectin Methylesterases Pme8A and PmeC2 from Rumen Butyrivibrio . Int J Mol Sci, 24, 2023
8TND	De novo designed protein binds poly ADP ribose polymerase inhibitors (PARPi) - holo veliparib Descriptor: (2R)-2-(7-carbamoyl-1H-benzimidazol-2-yl)-2-methylpyrrolidinium, De novo designed protein, SULFATE ION Authors: Lu, L, DeGrado, W.F. Deposit date: 2023-08-01 Release date: 2024-04-24 Method: X-RAY DIFFRACTION (1.29 Å) Cite: De novo design of drug-binding proteins with predictable binding energy and specificity. Science, 384, 2024
8TNC	De novo designed protein binds poly ADP ribose polymerase inhibitors (PARPi) - holo niraparib Descriptor: 2-{4-[(3S)-piperidin-3-yl]phenyl}-2H-indazole-7-carboxamide, De novo designed protein Authors: Lu, L, DeGrado, W.F. Deposit date: 2023-08-01 Release date: 2024-04-24 Method: X-RAY DIFFRACTION (1.4 Å) Cite: De novo design of drug-binding proteins with predictable binding energy and specificity. Science, 384, 2024
8TNB	De novo designed protein binds poly ADP ribose polymerase inhibitors (PARPi) - holo mefuparib Descriptor: 5-fluoro-2-{4-[(methylamino)methyl]phenyl}-1-benzofuran-7-carboxamide, De novo designed protein Authors: Lu, L, DeGrado, W.F. Deposit date: 2023-08-01 Release date: 2024-04-24 Method: X-RAY DIFFRACTION (1.4 Å) Cite: De novo design of drug-binding proteins with predictable binding energy and specificity. Science, 384, 2024
8TN9	Structural architecture of the acidic region of the B domain of coagulation factor V Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Coagulation factor V Authors: Mohammed, B.M, Basore, K, Summers, B, Pelc, L.A, Di Cera, E. Deposit date: 2023-08-01 Release date: 2023-10-04 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (3.05 Å) Cite: Structural architecture of the acidic region of the B domain of coagulation factor V. J.Thromb.Haemost., 22, 2024
8TN8	Crystal structure of the murine astrovirus capsid spike at 1.75 A Descriptor: Capsid polyprotein VP90, POTASSIUM ION Authors: Lanning, S, DuBois, R.M. Deposit date: 2023-08-01 Release date: 2023-11-15 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Structure and immunogenicity of the murine astrovirus capsid spike. J.Gen.Virol., 104, 2023

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