PDB: 46006 resultsInfo pagesStatus searchChemie searchBIRD

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8STQ	Crystal Structure of HIV-1 Reverse Transcriptase (Y181C) varient in Complex with 5-(2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)phenoxy)-2-naphthonitrile (JLJ600), a non-nucleoside inhibitor Descriptor: 5-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}naphthalene-2-carbonitrile, MAGNESIUM ION, Reverse transcriptase/ribonuclease H, ... Authors: Hollander, K, Frey, K.M, Jorgensen, W.L, Anderson, K.S. Deposit date: 2023-05-11 Release date: 2023-11-29 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.955 Å) Cite: Exploring novel HIV-1 reverse transcriptase inhibitors with drug-resistant mutants: A double mutant surprise. Protein Sci., 32, 2023
6TPQ	RNase M5 bound to 50S ribosome with precursor 5S rRNA Descriptor: 50S ribosomal protein L10, 50S ribosomal protein L13, 50S ribosomal protein L14, ... Authors: Oerum, S, Dendooven, T, Gilet, L, Catala, M, Degut, C, Trinquier, A, Barraud, P, Luisi, B, Condon, C, Tisne, C. Deposit date: 2019-12-13 Release date: 2020-09-30 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (3.07 Å) Cite: Structures of B. subtilis Maturation RNases Captured on 50S Ribosome with Pre-rRNAs. Mol.Cell, 80, 2020
8STS	Crystal Structure of HIV-1 Reverse Transcriptase (Y181C, V106A) varient in Complex with 5-(2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)-4-fluorophenoxy)-7-fluoro-2-naphthonitrile (JLJ636), a non-nucleoside inhibitor Descriptor: 5-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]-4-fluorophenoxy}-7-fluoronaphthalene-2-carbonitrile, MAGNESIUM ION, Reverse transcriptase/ribonuclease H, ... Authors: Hollander, K, Jorgensen, W.L, Anderson, K.S. Deposit date: 2023-05-11 Release date: 2023-11-29 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (3.02 Å) Cite: Exploring novel HIV-1 reverse transcriptase inhibitors with drug-resistant mutants: A double mutant surprise. Protein Sci., 32, 2023
6H5H	A computationally designed dRP lyase domain reconstructed from two heterologous fragments Descriptor: polb4 Authors: ElGamacy, M, Coles, M, Lupas, A.N. Deposit date: 2018-07-24 Release date: 2018-12-12 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: Asymmetric protein design from conserved supersecondary structures. J. Struct. Biol., 204, 2018
8PJJ	Cryo-EM structure of MLE in complex with SL7UUC RNA and ADP Descriptor: ADENOSINE-5'-DIPHOSPHATE, Dosage compensation regulator, SL7UUC RNA Authors: Jagtap, P.K.A, Hennig, J. Deposit date: 2023-06-23 Release date: 2023-11-22 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (4.24 Å) Cite: Structural basis of RNA-induced autoregulation of the DExH-type RNA helicase maleless. Mol.Cell, 83, 2023
3TZD	Crystal structure of the complex of Human Chromobox Homolog 3 (CBX3) Descriptor: Chromobox protein homolog 3, Histone H1.4 Authors: Amaya, M.F, Ravichandran, M, Loppnau, P, Kozieradzki, I, Edwards, A.M, Arrowsmith, C.H, Weigelt, J, Bountra, C, Bochkarev, A, Min, J, Ouyang, H, Structural Genomics Consortium (SGC) Deposit date: 2011-09-27 Release date: 2012-03-07 Last modified: 2013-01-23 Method: X-RAY DIFFRACTION (1.81 Å) Cite: Structural basis of the chromodomain of Cbx3 bound to methylated peptides from histone h1 and G9a. Plos One, 7, 2012
7OWG	human DEPTOR in a complex with mutant human mTORC1 A1459P Descriptor: DEP domain-containing mTOR-interacting protein, Regulatory-associated protein of mTOR, Serine/threonine-protein kinase mTOR, ... Authors: Heimhalt, M, Berndt, A, Wagstaff, J, Anandapadamanaban, M, Perisic, O, Maslen, S, McLaughlin, S, Yu, W.-H, Masson, G.R, Boland, A, Ni, X, Yamashita, K, Murshudov, G.N, Skehel, M, Freund, S.M, Williams, R.L. Deposit date: 2021-06-18 Release date: 2021-09-08 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (4.7 Å) Cite: Bipartite binding and partial inhibition links DEPTOR and mTOR in a mutually antagonistic embrace. Elife, 10, 2021
7W5Z	Cryo-EM structure of Tetrahymena thermophila mitochondrial complex IV, composite dimer model Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-oxoglutarate/malate carrier protein, CARDIOLIPIN, ... Authors: Zhou, L, Maldonado, M, Padavannil, A, Letts, J. Deposit date: 2021-11-30 Release date: 2022-04-06 Last modified: 2022-06-01 Method: ELECTRON MICROSCOPY (3.02 Å) Cite: Structures of Tetrahymena 's respiratory chain reveal the diversity of eukaryotic core metabolism. Science, 376, 2022
8T7T	CryoEM structure of the HisRS-like domain of human GCN2 Descriptor: eIF-2-alpha kinase GCN2 Authors: Yin, J.Z, Keszei, A.F.A, Mazhab-Jafari, M.T, Sicheri, F. Deposit date: 2023-06-21 Release date: 2024-03-13 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: CryoEM structure of the HisRS-like domain of human GCN2 To Be Published
4I5H	Crystal Structure of a Double Mutant Rat Erk2 Complexed With a Type II Quinazoline Inhibitor Descriptor: Mitogen-activated protein kinase 1, N-{3-[2-(cyclopropylamino)quinazolin-6-yl]-4-methylphenyl}-3-(trifluoromethyl)benzamide Authors: Hari, S.B, Maly, D.J, Merritt, E.A. Deposit date: 2012-11-28 Release date: 2013-07-10 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Sequence determinants of a specific inactive protein kinase conformation. Chem.Biol., 20, 2013
4IA2	Diastereotopic and Deuterium Effects in Gemini Descriptor: 21-NOR-9,10-SECOCHOLESTA-5,7,10(19)-TRIENE-1,3,25-TRIOL, 20-(4-HYDROXY-4-METHYLPENTYL)-, (1A,3B,5Z,7E), ... Authors: Maehr, H, Rochel, N, Suh, N, Uskokovic, M. Deposit date: 2012-12-06 Release date: 2013-04-24 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.95 Å) Cite: Diastereotopic and deuterium effects in gemini. J.Med.Chem., 56, 2013
7W80	Crystal Structure of the Heterodimeric HIF-2 in Complex with Antagonist Belzutifan Descriptor: 3-{[(1S,2S,3R)-2,3-difluoro-1-hydroxy-7-(methylsulfonyl)-2,3-dihydro-1H-inden-4-yl]oxy}-5-fluorobenzonitrile, Aryl hydrocarbon receptor nuclear translocator, Endothelial PAS domain-containing protein 1 Authors: Ren, X, Diao, X, Zhuang, J, Wu, D. Deposit date: 2021-12-07 Release date: 2022-09-21 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.754 Å) Cite: Structural basis for the allosteric inhibition of hypoxia-inducible factor (HIF)-2 by belzutifan. Mol.Pharmacol., 2022
6HA1	Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Crowe-McAuliffe, C, Graf, M, Huter, P, Abdelshahid, M, Novacek, J, Wilson, D.N. Deposit date: 2018-08-07 Release date: 2018-08-29 Last modified: 2021-01-27 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structural basis for antibiotic resistance mediated by theBacillus subtilisABCF ATPase VmlR. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
7WBN	PDB structure of RevCC Descriptor: RevCC Authors: Han, S, Kim, D, Kaur, M, Lim, Y.B, Barnwal, R.P. Deposit date: 2021-12-17 Release date: 2022-10-26 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Pseudo-Isolated alpha-Helix Platform for the Recognition of Deep and Narrow Targets. J.Am.Chem.Soc., 144, 2022
8SWC	RNase H complex with ASO (OOO) and RNA Descriptor: CALCIUM ION, PHOSPHATE ION, PO ASO, ... Authors: Cho, Y.-J, Iwamoto, N. Deposit date: 2023-05-18 Release date: 2024-06-19 Method: X-RAY DIFFRACTION (2.68 Å) Cite: Crystal structure of RNase H/RNA/PO-ASO complex at an atomic level To Be Published
7MSF	MS2 PROTEIN CAPSID/RNA COMPLEX Descriptor: 5'-R(*UP*CP*GP*CP*CP*AP*AP*CP*AP*GP*GP*CP*GP*G)-3', MS2 PROTEIN CAPSID Authors: Rowsell, S, Stonehouse, N.J, Convery, M.A, Adams, C.J, Ellington, A.D, Hirao, I, Peabody, D.S, Stockley, P.G, Phillips, S.E.V. Deposit date: 1998-05-20 Release date: 1998-11-11 Last modified: 2023-08-02 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Crystal structures of a series of RNA aptamers complexed to the same protein target. Nat.Struct.Biol., 5, 1998
8DKR	Pseudomonas-phage E217 TerL nuclease domain Descriptor: Large terminase protein, MAGNESIUM ION Authors: Cingolani, G, Lokareddy, R, Hou, D. Deposit date: 2022-07-06 Release date: 2022-09-07 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Terminase Subunits from the Pseudomonas-Phage E217. J.Mol.Biol., 434, 2022
6HTQ	Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome Descriptor: 16S rRNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Wilson, D.N, Abdelshahid, M. Deposit date: 2018-10-04 Release date: 2019-10-23 Last modified: 2020-09-30 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Structural Basis for Regulation of the Opposing (p)ppGpp Synthetase and Hydrolase within the Stringent Response Orchestrator Rel. Cell Rep, 32, 2020
7WJG	Streptococcus mutans BusR transcriptional factor Descriptor: CITRIC ACID, Putative transcriptional regulator (GntR family) Authors: Li, X, Liu, N. Deposit date: 2022-01-06 Release date: 2023-01-11 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.42 Å) Cite: Structural study of transcriptional factor BusR To Be Published
2QNP	HIV-1 Protease in complex with a iodo decorated pyrrolidine-based inhibitor Descriptor: CHLORIDE ION, Gag-Pol polyprotein (Pr160Gag-Pol), N,N'-(3S,4S)-pyrrolidine-3,4-diylbis[N-(4-iodobenzyl)benzenesulfonamide] Authors: Boettcher, J, Blum, A, Heine, A, Diederich, W.E, Klebe, G. Deposit date: 2007-07-19 Release date: 2008-04-15 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.41 Å) Cite: Structure-Guided Design of C2-Symmetric HIV-1 Protease Inhibitors Based on a Pyrrolidine Scaffold. J.Med.Chem., 51, 2008
8U6G	Crystal Structure of HIV-1 Reverse Transcriptase in Complex with 3-(2-(2-(3-acryloyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)ethoxy)-4-chlorophenoxy)-5-chlorobenzonitrile (JLJ744), a non-nucleoside inhibitor Descriptor: 3-chloro-5-{4-chloro-2-[2-(2-oxo-3-propanoyl-2,3-dihydro-1H-benzimidazol-1-yl)ethoxy]phenoxy}benzonitrile, MAGNESIUM ION, Reverse transcriptase/ribonuclease H, ... Authors: Prucha, G, Carter, Z, Jorgensen, W.L, Anderson, K.S. Deposit date: 2023-09-13 Release date: 2023-11-08 Method: X-RAY DIFFRACTION (2.77 Å) Cite: Covalent and noncovalent strategies for targeting Lys102 in HIV-1 reverse transcriptase. Eur.J.Med.Chem., 262, 2023
8U6B	Crystal Structure of HIV-1 Reverse Transcriptase in Complex with N-(4-chloro-3-(3-chloro-5-cyanophenoxy)phenethyl)acrylamide (JLJ731), a non-nucleoside inhibitor Descriptor: N-{2-[4-chloro-3-(3-chloro-5-cyanophenoxy)phenyl]ethyl}prop-2-enamide, Reverse transcriptase/ribonuclease H, p51 RT Authors: Hollander, K, Henry, S, Jorgensen, W.L, Anderson, K.S. Deposit date: 2023-09-13 Release date: 2023-11-08 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Covalent and noncovalent strategies for targeting Lys102 in HIV-1 reverse transcriptase. Eur.J.Med.Chem., 262, 2023
8U6P	Crystal Structure of HIV-1 Reverse Transcriptase in Complex with 3-(2-((2-cyanoindolizin-8-yl)oxy)phenoxy)-N,N-dimethylpropanamide (JLJ754), a non-nucleoside inhibitor Descriptor: 3-(2-{[(4S)-2-cyanoindolizin-8-yl]oxy}phenoxy)-N,N-dimethylpropanamide, MAGNESIUM ION, PHOSPHATE ION, ... Authors: Prucha, G, Henry, S, Jorgensen, W.L, Anderson, K.S. Deposit date: 2023-09-13 Release date: 2023-11-08 Method: X-RAY DIFFRACTION (2.81 Å) Cite: Covalent and noncovalent strategies for targeting Lys102 in HIV-1 reverse transcriptase. Eur.J.Med.Chem., 262, 2023
8U6Q	Crystal Structure of HIV-1 Reverse Transcriptase in Complex with 8-(2-(3-oxo-3-(pyrrolidin-1-yl)propoxy)phenoxy)indolizine-2-carbonitrile (JLJ755), a non-nucleoside inhibitor Descriptor: (4S)-8-{2-[3-oxo-3-(pyrrolidin-1-yl)propoxy]phenoxy}indolizine-2-carbonitrile, Reverse transcriptase/ribonuclease H, p51 RT Authors: Prucha, G, Henry, S, Jorgensen, W.L, Anderson, K.S. Deposit date: 2023-09-13 Release date: 2023-11-08 Method: X-RAY DIFFRACTION (2.55 Å) Cite: Covalent and noncovalent strategies for targeting Lys102 in HIV-1 reverse transcriptase. Eur.J.Med.Chem., 262, 2023
8U6A	Crystal Structure of HIV-1 Reverse Transcriptase in Complex with (JLJ729), a non-nucleoside inhibitor Descriptor: N-(3-{2-[5-chloro-2-(3-chloro-5-cyanophenoxy)phenoxy]ethyl}phenyl)prop-2-enamide, Reverse transcriptase/ribonuclease H, p51 RT Authors: Hollander, K, Carter, Z, Jorgensen, W.L, Anderson, K.S. Deposit date: 2023-09-13 Release date: 2023-11-08 Method: X-RAY DIFFRACTION (2.37 Å) Cite: Covalent and noncovalent strategies for targeting Lys102 in HIV-1 reverse transcriptase. Eur.J.Med.Chem., 262, 2023

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