PDB: 1577 resultsInfo pagesStatus searchChemie searchBIRD

---

2N13	Complex structure of MyUb (1080-1122) of human Myosin VI with K63-diUb Descriptor: Ubiquitin, Unconventional myosin-VI Authors: He, F, Walters, K. Deposit date: 2015-03-20 Release date: 2016-03-09 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Myosin VI Contains a Compact Structural Motif that Binds to Ubiquitin Chains. Cell Rep, 14, 2016
2MSG	Solid-state NMR structure of ubiquitin Descriptor: Ubiquitin Authors: Lakomek, N, Habenstein, B, Loquet, A, Shi, C, Giller, K, Wolff, S, Becker, S, Fasshuber, H, Lange, A. Deposit date: 2014-08-04 Release date: 2015-02-18 Last modified: 2024-05-15 Method: SOLID-STATE NMR Cite: Structural heterogeneity in microcrystalline ubiquitin studied by solid-state NMR. Protein Sci., 24, 2015
2MQJ	Solution structure of ubiquitin-like protein from Caldiarchaeum subterraneum Descriptor: Ubiquitin-like protein Authors: Ye, K. Deposit date: 2014-06-22 Release date: 2015-06-24 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Solution structure of ubiquitin-like protein from Caldiarchaeum subterraneum To be Published
2N7D	Solution structure of the UBL domain of human Ddi2 Descriptor: Protein DDI1 homolog 2 Authors: Siva, M, Grantz Saskova, K, Veverka, V. Deposit date: 2015-09-08 Release date: 2016-07-20 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Human DNA-Damage-Inducible 2 Protein Is Structurally and Functionally Distinct from Its Yeast Ortholog. Sci Rep, 6, 2016
7P08	Solution structure of the human SF3A1 ubiquitin-like domain Descriptor: Isoform 1 of Splicing factor 3A subunit 1 Authors: de Vries, T, Campagne, S, Allain, F.H.T. Deposit date: 2021-06-29 Release date: 2022-02-09 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: Sequence-specific RNA recognition by an RGG motif connects U1 and U2 snRNP for spliceosome assembly. Proc.Natl.Acad.Sci.USA, 119, 2022
7P0V	Crystal structure of human SF3A1 ubiquitin-like domain in complex with U1 snRNA stem-loop 4 Descriptor: Isoform 2 of Splicing factor 3A subunit 1, PENTAETHYLENE GLYCOL, RNA (5'-R(P*GP*GP*GP*GP*AP*CP*UP*GP*CP*GP*UP*UP*CP*GP*CP*GP*CP*UP*UP*UP*CP*CP*CP*C)-3'), ... Authors: Sabath, K, de Vries, T, Jonas, S. Deposit date: 2021-06-30 Release date: 2022-04-20 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.56 Å) Cite: Sequence-specific RNA recognition by an RGG motif connects U1 and U2 snRNP for spliceosome assembly. Proc.Natl.Acad.Sci.USA, 119, 2022
7OOJ	Structure of D-Thr53 Ubiquitin Descriptor: CADMIUM ION, Ubiquitin Authors: Becker, S. Deposit date: 2021-05-27 Release date: 2022-05-18 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.6 Å) Cite: A litmus test for classifying recognition mechanisms of transiently binding proteins. Nat Commun, 13, 2022
2OOB	crystal structure of the UBA domain from Cbl-b ubiquitin ligase in complex with ubiquitin Descriptor: E3 ubiquitin-protein ligase CBL-B, Ubiquitin Authors: Kozlov, G, Gehring, K. Deposit date: 2007-01-25 Release date: 2007-02-06 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural basis for ubiquitin-mediated dimerization and activation of the ubiquitin protein ligase Cbl-b. Mol.Cell, 27, 2007
6V5D	EROS3 RDC and NOE Derived Ubiquitin Ensemble Descriptor: Ubiquitin Authors: Lange, O.F, Lakomek, N.A, Smith, C.A, Griesinger, C, de Groot, B.L. Deposit date: 2019-12-04 Release date: 2020-01-01 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Enhancing NMR derived ensembles with kinetics on multiple timescales. J.Biomol.Nmr, 74, 2020
2OJR	Structure of ubiquitin solved by SAD using the Lanthanide-Binding Tag Descriptor: TERBIUM(III) ION, Ubiquitin Authors: Silvaggi, N.R, Allen, K.N. Deposit date: 2007-01-13 Release date: 2007-06-12 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Double-Lanthanide-Binding Tags for Macromolecular Crystallographic Structure Determination. J.Am.Chem.Soc., 129, 2007
2NR2	The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native states ensembles of proteins Descriptor: Ubiquitin Authors: Richter, B, Gsponer, J, Varnai, P, Salvatella, X, Vendruscolo, M. Deposit date: 2006-11-01 Release date: 2007-05-08 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native state ensembles of proteins J.Biomol.Nmr, 37, 2007
6W9R	Crystal structure of an OTU deubiquitinase from Wolbachia pipientis wMel bound to ubiquitin Descriptor: CITRATE ANION, OTU domain-containing protein wMelOTU, Ubiquitin Authors: Schubert, A.F, Pruneda, J.N, Komander, D. Deposit date: 2020-03-23 Release date: 2020-07-01 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.82 Å) Cite: Identification and characterization of diverse OTU deubiquitinases in bacteria. Embo J., 39, 2020
2O6V	Crystal structure and solution NMR studies of Lys48-linked tetraubiquitin at neutral pH Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, SULFATE ION, Ubiquitin Authors: Eddins, M.J, Wolberger, C. Deposit date: 2006-12-08 Release date: 2007-02-13 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal Structure and Solution NMR Studies of Lys48-linked Tetraubiquitin at Neutral pH J.Mol.Biol., 367, 2007
2PEA	NMR Based Structure of the Closed Conformation of LYS48-Linked Di-Ubiquitin Using Experimental Global Rotational Diffusion Tensor from NMR Relaxation Measurements Descriptor: Ubiquitin Authors: Ryabov, Y, Fushman, D. Deposit date: 2007-04-02 Release date: 2007-07-10 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structural assembly of multidomain proteins and protein complexes guided by the overall rotational diffusion tensor. J.Am.Chem.Soc., 129, 2007
2PE9	NMR Based Structure of the Open Conformation of LYS48-Linked Di-UBiquitin Using Experimental Global Rotational Diffusion Tensor from NMR Relaxation Measurements Descriptor: Ubiquitin Authors: Ryabov, Y, Fushman, D. Deposit date: 2007-04-02 Release date: 2007-07-10 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structural assembly of multidomain proteins and protein complexes guided by the overall rotational diffusion tensor. J.Am.Chem.Soc., 129, 2007
3VFK	The structure of monodechloro-teicoplanin in complex with its ligand, using ubiquitin as a ligand carrier Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-amino-2-deoxy-beta-D-glucopyranose, 8-METHYLNONANOIC ACID, ... Authors: Economou, N.J, Weeks, S.D, Grasty, K.C, Loll, P.J. Deposit date: 2012-01-09 Release date: 2013-01-09 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structure of the complex between teicoplanin and a bacterial cell-wall peptide: use of a carrier-protein approach. Acta Crystallogr.,Sect.D, 69, 2013
3VDZ	Tailoring Encodable Lanthanide-Binding Tags as MRI Contrast Agents: xq-dSE3-Ubiquitin at 2.4 Angstroms Descriptor: GADOLINIUM ATOM, SULFATE ION, Ubiquitin-40S ribosomal protein S27a Authors: Daughtry, K.D, Martin, L.J, Surraju, A, Imperiali, B, Allen, K.N. Deposit date: 2012-01-06 Release date: 2012-11-28 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Tailoring encodable lanthanide-binding tags as MRI contrast agents. Chembiochem, 13, 2012
3ZLZ	Lys6-linked tri-ubiquitin Descriptor: UBIQUITIN, ZINC ION Authors: Hospenthal, M.K, Freund, S.M.V, Komander, D. Deposit date: 2013-02-04 Release date: 2013-04-10 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Assembly, Analysis and Architecture of Atypical Ubiquitin Chains Nat.Struct.Mol.Biol., 20, 2013
4A20	Crystal structure of the Ubl domain of Mdy2 (Get5) at 1.78A Descriptor: SULFATE ION, UBIQUITIN-LIKE PROTEIN MDY2 Authors: Simon, A.C, Simpson, P.J, Murray, J.W, Isaacson, R.L. Deposit date: 2011-09-21 Release date: 2012-11-14 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.78 Å) Cite: Structure of the Sgt2/Get5 Complex Provides Insights Into Get-Mediated Targeting of Tail-Anchored Membrane Proteins Proc.Natl.Acad.Sci.USA, 110, 2013
8CMR	Linear specific OTU-type DUB SnOTU from the pathogen S. negenvensis in complex with linear di-ubiquitin Descriptor: OTU domain-containing protein, Polyubiquitin-B Authors: Uthoff, M, Hermanns, T, Boll, V, Hofmann, K, Baumann, U. Deposit date: 2023-02-21 Release date: 2023-11-22 Method: X-RAY DIFFRACTION (2.24 Å) Cite: Functional and structural diversity in deubiquitinases of the Chlamydia-like bacterium Simkania negevensis. Nat Commun, 14, 2023
8DMB	Structure of Desulfovirgula thermocuniculi IsrB (DtIsrB) in complex with omega RNA and target DNA Descriptor: MAGNESIUM ION, Ubiquitin-like protein SMT3,IsrB protein,monomeric superfolder Green Fluorescent Protein, non-target DNA, ... Authors: Seiichi, H, Kappel, K, Zhang, F. Deposit date: 2022-07-08 Release date: 2022-10-19 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structure of the OMEGA nickase IsrB in complex with omega RNA and target DNA. Nature, 610, 2022
8E7O	CRYSTAL STRUCTURE OF LYS48-LINKED TETRAUBIQUITIN Descriptor: SULFATE ION, Ubiquitin Authors: Lemma, B.E, Fushman, D. Deposit date: 2022-08-24 Release date: 2022-11-02 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Mechanism of selective recognition of Lys48-linked polyubiquitin by macrocyclic peptide inhibitors of proteasomal degradation. Nat Commun, 14, 2023
8DMS	Crystal structure of Legionella pneumophila macrodomain MavL in complex with ubiquitin vinyl methyl ester soaked with ADP-ribose Descriptor: CITRATE ANION, METHYL 4-AMINOBUTANOATE, MavL, ... Authors: Zhang, Z, Das, C. Deposit date: 2022-07-08 Release date: 2023-07-12 Last modified: 2024-07-24 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Legionella metaeffector MavL reverses ubiquitin ADP-ribosylation via a conserved arginine-specific macrodomain. Nat Commun, 15, 2024
8DMQ	Crystal structure of Legionella pneumophila macrodomain MavL in complex with ubiquitin vinyl methyl ester Descriptor: 1,2-ETHANEDIOL, CITRATE ANION, METHYL 4-AMINOBUTANOATE, ... Authors: Zhang, Z, Das, C. Deposit date: 2022-07-08 Release date: 2023-07-12 Last modified: 2024-07-24 Method: X-RAY DIFFRACTION (2.195 Å) Cite: Legionella metaeffector MavL reverses ubiquitin ADP-ribosylation via a conserved arginine-specific macrodomain. Nat Commun, 15, 2024
6GF2	The structure of the ubiquitin-like modifier FAT10 reveals a novel targeting mechanism for degradation by the 26S proteasome Descriptor: Ubiquitin D Authors: Aichem, A, Anders, S, Catone, N, Roessler, P, Stotz, S, Berg, A, Schwab, R, Scheuermann, S, Bialas, J, Schmidtke, G, Peter, C, Groettrup, M, Wiesner, S. Deposit date: 2018-04-29 Release date: 2018-08-08 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: The structure of the ubiquitin-like modifier FAT10 reveals an alternative targeting mechanism for proteasomal degradation. Nat Commun, 9, 2018

<3456789101112131415161718>