PDB: 215 resultsInfo pagesStatus searchChemie searchBIRD

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6XLT	The 1.48 Angstrom crystal structure of evolved galactose oxidase variant A3.E7 Descriptor: ACETATE ION, CALCIUM ION, COPPER (II) ION, ... Authors: Liu, A, Li, J. Deposit date: 2020-06-29 Release date: 2021-02-03 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.478 Å) Cite: Formation of Monofluorinated Radical Cofactor in Galactose Oxidase through Copper-Mediated C-F Bond Scission. J.Am.Chem.Soc., 142, 2020
7JNB	The structure of CBM32-1 and CBM32-2 domains from Clostridium perfringens ZmpB in complex with GalNAc Descriptor: 2-acetamido-2-deoxy-alpha-D-galactopyranose, CALCIUM ION, F5/8 type C domain protein, ... Authors: Pluvinage, B, Boraston, A.B. Deposit date: 2020-08-04 Release date: 2021-02-03 Last modified: 2021-08-18 Method: X-RAY DIFFRACTION (2 Å) Cite: Architecturally complex O -glycopeptidases are customized for mucin recognition and hydrolysis. Proc.Natl.Acad.Sci.USA, 118, 2021
7JND	The structure of CBM32-1 and CBM32-2 domains from Clostridium perfringens ZmpB Descriptor: CALCIUM ION, F5/8 type C domain protein, GLYCEROL Authors: Pluvinage, B, Boraston, A.B. Deposit date: 2020-08-04 Release date: 2021-02-03 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2 Å) Cite: Architecturally complex O -glycopeptidases are customized for mucin recognition and hydrolysis. Proc.Natl.Acad.Sci.USA, 118, 2021
7JNF	The structure of CBM32-1 and CBM32-2 domains from Clostridium perfringens ZmpB in complex with GalNAc Descriptor: 2-acetamido-2-deoxy-alpha-D-galactopyranose, CALCIUM ION, F5/8 type C domain protein, ... Authors: Pluvinage, B, Boraston, A.B. Deposit date: 2020-08-04 Release date: 2021-02-03 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Architecturally complex O -glycopeptidases are customized for mucin recognition and hydrolysis. Proc.Natl.Acad.Sci.USA, 118, 2021
7JFS	The structure of the CBM32-1, CBM32-2, and M60 catalytic domains from Clostridium perfringens ZmpB Descriptor: F5/8 type C domain protein, ZINC ION Authors: Pluvinage, B, Boraston, A.B. Deposit date: 2020-07-17 Release date: 2021-02-03 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (4.6 Å) Cite: Architecturally complex O -glycopeptidases are customized for mucin recognition and hydrolysis. Proc.Natl.Acad.Sci.USA, 118, 2021
7KWO	rFVIIIFc-VWF-XTEN (BIVV001) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, COPPER (II) ION, ... Authors: Fuller, J.R, Batchelor, J.D. Deposit date: 2020-12-01 Release date: 2021-03-03 Last modified: 2021-06-09 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Molecular determinants of the factor VIII/von Willebrand factor complex revealed by BIVV001 cryo-electron microscopy. Blood, 137, 2021
7KVE	Cryo-EM structure of human Factor V at 3.3 Angstrom resolution Descriptor: Coagulation factor V Authors: Ruben, E.A, Di Cera, E. Deposit date: 2020-11-27 Release date: 2021-03-10 Last modified: 2021-06-16 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Cryo-EM structures of human coagulation factors V and Va. Blood, 137, 2021
7KXY	Cryo-EM structure of human Factor Va at 4.4 Angstrom resolution Descriptor: Coagulation factor Va Authors: Ruben, E.A, Di Cera, E. Deposit date: 2020-12-05 Release date: 2021-03-10 Last modified: 2021-06-16 Method: ELECTRON MICROSCOPY (4.4 Å) Cite: Cryo-EM structures of human coagulation factors V and Va. Blood, 137, 2021
7KVF	Cryo-EM structure of human Factor V at 3.6 Angstrom resolution Descriptor: Coagulation factor V Authors: Ruben, E.A, Di Cera, E. Deposit date: 2020-11-28 Release date: 2021-03-24 Last modified: 2021-06-16 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Cryo-EM structures of human coagulation factors V and Va. Blood, 137, 2021
7M0R	Cryo-EM structure of the Sema3A/PlexinA4/Neuropilin 1 complex Descriptor: CALCIUM ION, Neuropilin-1, Plexin-A4, ... Authors: Lu, D, Shang, G, He, X, Bai, X, Zhang, X. Deposit date: 2021-03-11 Release date: 2021-05-05 Last modified: 2021-06-09 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Architecture of the Sema3A/PlexinA4/Neuropilin tripartite complex. Nat Commun, 12, 2021
6YXZ	Structure and activity of the GH20 beta-N-beta-N-acetylhexosaminidase from Bifidobacterium bifidum Descriptor: Beta-N-acetylhexosaminidase, CHLORIDE ION, GLYCEROL, ... Authors: He, Y, Jin, Y. Deposit date: 2020-05-04 Release date: 2021-05-12 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Structure and activity of the GH20 beta-N-beta-N-acetylhexosaminidase from Bifidobacterium bifidum To Be Published
6Z14	Structure of Bifidobacterium bifidum GH20 beta-N-beta-N-acetylhexosaminidase E553Q variant in complex with 4MU-6SGlcNAc-derived oxazoline Descriptor: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Beta-N-acetylhexosaminidase, NITRATE ION, ... Authors: He, Y, Jin, Y, Rizkallah, P, Chen, P. Deposit date: 2020-05-12 Release date: 2021-05-19 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.67 Å) Cite: Structure and activity of the GH20 beta-N-beta-N-acetylhexosaminidase from Bifidobacterium bifidum To Be Published
7MFL	Structure of the Clostridium perfringens GH89 in complex with beta-HNJNAc Descriptor: 1,2-ETHANEDIOL, Alpha-N-acetylglucosaminidase family protein, CALCIUM ION, ... Authors: Boraston, A.B. Deposit date: 2021-04-09 Release date: 2021-07-28 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2 Å) Cite: Iminosugar C-Glycosides Work as Pharmacological Chaperones of NAGLU, a Glycosidase Involved in MPS IIIB Rare Disease*. Chemistry, 27, 2021
7MFK	Structure of the Clostridium perfringens GH89 in complex with alpha-HNJNAc Descriptor: 1,2-ETHANEDIOL, Alpha-N-acetylglucosaminidase family protein, CALCIUM ION, ... Authors: Boraston, A.B. Deposit date: 2021-04-09 Release date: 2021-07-28 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.13 Å) Cite: Iminosugar C-Glycosides Work as Pharmacological Chaperones of NAGLU, a Glycosidase Involved in MPS IIIB Rare Disease*. Chemistry, 27, 2021
7M22	Cryo-EM structure of the HCMV pentamer bound by human neuropilin 2 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Envelope glycoprotein UL130, ... Authors: Wrapp, D, McLellan, J.S. Deposit date: 2021-03-15 Release date: 2021-08-11 Last modified: 2022-03-23 Method: ELECTRON MICROSCOPY (3.65 Å) Cite: Structural basis for HCMV Pentamer recognition by neuropilin 2 and neutralizing antibodies. Sci Adv, 8, 2022
7S0P	Crystal structure of Porcine Factor VIII C2 Domain Bound to Phosphatidylserine Descriptor: Coagulation factor VIII, PHOSPHOSERINE Authors: Peters, S.C, Childers, K.C, Wo, S.W, Brison, C.M, Swanson, C.D, Spiegel, P.C. Deposit date: 2021-08-30 Release date: 2021-10-27 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.3 Å) Cite: Stable binding to phosphatidylserine-containing membranes requires conserved arginine residues in tandem C domains of blood coagulation factor VIII. Front Mol Biosci, 9, 2022
7NIT	X-ray structure of a multidomain BbgIII from Bifidobacterium bifidum Descriptor: Beta-galactosidase, CALCIUM ION, GLYCEROL, ... Authors: Moroz, O.V, Blagova, E, Lebedev, A.A, Sanchez Rodriguez, F, Rigden, D.J, Tams, J.W, Wilting, R, Vester, J.K, Longhin, E, Krogh, K.B.R, Pache, R.A, Davies, G.J, Wilson, K.S. Deposit date: 2021-02-14 Release date: 2021-12-22 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.89 Å) Cite: Multitasking in the gut: the X-ray structure of the multidomain BbgIII from Bifidobacterium bifidum offers possible explanations for its alternative functions. Acta Crystallogr D Struct Biol, 77, 2021
7BLJ	Structure of CBM BT3015C from Bacteroides thetaiotaomicron in complex with O-GalNAc core 2-Thr Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, THREONINE, ... Authors: Costa, R.L. Deposit date: 2021-01-18 Release date: 2022-03-02 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.76 Å) Cite: Structural basis for mucin-type O-glycan recognition by proteins of a Bacteroides thetaiotaomicron polysaccharide utilization loci To Be Published
7BLG	Structure of CBM BT3015C from Bacteroides thetaiotaomicron in complex with galactose Descriptor: CALCIUM ION, beta-D-galactopyranose, family 32 carbohydrate-binding module from Bacteroides thetaiotaomicron Authors: Costa, R.L. Deposit date: 2021-01-18 Release date: 2022-03-02 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.18 Å) Cite: Structural basis for mucin-type O-glycan recognition by proteins of a Bacteroides thetaiotaomicron polysaccharide utilization loci To Be Published
7BLH	Structure of CBM BT3015C from Bacteroides thetaiotaomicron in complex with O-GalNAc core 1-Thr Descriptor: CALCIUM ION, THREONINE, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-alpha-D-galactopyranose, ... Authors: Costa, R.L, Carvalho, A.L. Deposit date: 2021-01-18 Release date: 2022-03-02 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.79 Å) Cite: Structural basis for mucin-type O-glycan recognition by proteins of a Bacteroides thetaiotaomicron polysaccharide utilization loci To Be Published
7BLK	Structure of CBM BT3015C from Bacteroides thetaiotaomicron Descriptor: CALCIUM ION, family 32 carbohydrate-binding module from Bacteroides thetaiotaomicron Authors: Costa, R.L. Deposit date: 2021-01-18 Release date: 2022-03-02 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.06 Å) Cite: Structural basis for mucin-type O-glycan recognition by proteins of a Bacteroides thetaiotaomicron polysaccharide utilization loci To Be Published
7T4S	CryoEM structure of the HCMV Pentamer gH/gL/UL128/UL130/UL131A in complex with NRP2 and neutralizing fabs 8I21 and 13H11 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Envelope glycoprotein H, ... Authors: Kschonsak, M, Johnson, M.C, Schelling, R, Green, E.M, Rouge, L, Ho, H, Patel, N, Kilic, C, Kraft, E, Arthur, C.P, Rohou, A.L, Comps-Agrar, L, Martinez-Martin, N, Perez, L, Payandeh, J, Ciferri, C. Deposit date: 2021-12-10 Release date: 2022-03-23 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structural basis for HCMV Pentamer receptor recognition and antibody neutralization. Sci Adv, 8, 2022
7O1N	Crystal Structure of Human Neuropilin-1 b1 Domain mutant - Y297A Descriptor: Neuropilin-1 Authors: Djordjevic, S, Chandanani, J, Faleeva, M, Pinotsis, N. Deposit date: 2021-03-29 Release date: 2022-04-13 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.56 Å) Cite: Crystal Structure of Human Neuropilin-1 b1 Domain mutant - Y297A To Be Published
7TPP	Cryo-em structure of human prothrombin:prothrombinase at 4.1 Angstrom resolution Descriptor: Activated factor Xa heavy chain, Coagulation factor Va, Factor X light chain, ... Authors: Di Cera, E, Ruben, E.A. Deposit date: 2022-01-25 Release date: 2022-05-04 Last modified: 2022-06-29 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Cryo-EM structure of the prothrombin-prothrombinase complex. Blood, 139, 2022
7TPQ	Cryo-em structure of human prothrombinase on a nanodisc at 5.3 Angstrom resolution Descriptor: Activated factor Xa heavy chain, Coagulation factor Va, Factor X light chain Authors: Di Cera, E, Ruben, E.A. Deposit date: 2022-01-25 Release date: 2022-05-04 Last modified: 2022-06-29 Method: ELECTRON MICROSCOPY (5.3 Å) Cite: Cryo-EM structure of the prothrombin-prothrombinase complex. Blood, 139, 2022

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