Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5LPE
DownloadVisualize
BU of 5lpe by Molmil
Kallikrein-related peptidase 10 complex with Zn2+
Descriptor: Kallikrein-10, SULFATE ION, ZINC ION
Authors:Goettig, P, Debela, M, Magdolen, V, Bode, W, Brandstetter, H.
Deposit date:2016-08-12
Release date:2016-10-05
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structural basis for the Zn2+ inhibition of the zymogen-like kallikrein-related peptidase 10.
Biol.Chem., 397, 2016
5LSO
DownloadVisualize
BU of 5lso by Molmil
Crystal structure of SPF45 UHM domain with cyclic peptide inhibitor
Descriptor: LYS-SER-ARG-TRP-ASP-GLU, Splicing factor 45
Authors:Jagtap, P.K.A, Garg, D, Sattler, M.
Deposit date:2016-09-05
Release date:2016-10-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Rational Design of Cyclic Peptide Inhibitors of U2AF Homology Motif (UHM) Domains To Modulate Pre-mRNA Splicing.
J. Med. Chem., 59, 2016
5LVH
DownloadVisualize
BU of 5lvh by Molmil
Hen Egg White Lysozyme co-crystallized with trans-Ru(DMSO)4Cl2
Descriptor: ACETATE ION, CHLORIDE ION, GLYCEROL, ...
Authors:Kurpiewska, K, Halajko, P, Lewinski, K.
Deposit date:2016-09-14
Release date:2016-09-21
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Ligand-dependent interaction of anticancer ruthenium complexes with hen egg white lysozyme and human lysozyme
To Be Published
5LTY
DownloadVisualize
BU of 5lty by Molmil
Homeobox transcription factor CDX2 bound to methylated DNA
Descriptor: DNA (5'-D(P*GP*GP*AP*GP*GP*TP*(5CM)P*GP*TP*AP*AP*AP*AP*CP*AP*CP*AP*A)-3'), DNA (5'-D(P*TP*TP*GP*TP*GP*TP*TP*TP*TP*AP*(5CM)P*GP*AP*CP*CP*TP*CP*C)-3'), Homeobox protein CDX-2
Authors:Morgunova, E, Popov, A, Taipale, J.
Deposit date:2016-09-07
Release date:2017-05-31
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:Impact of cytosine methylation on DNA binding specificities of human transcription factors.
Science, 356, 2017
5LVJ
DownloadVisualize
BU of 5lvj by Molmil
Hen Egg White Lysozyme co-crystallized with [H2Ind][trans-RuCl4(DMSO)(HInd)]
Descriptor: ACETATE ION, CHLORIDE ION, GLYCEROL, ...
Authors:Kurpiewska, K, Halajko, P, Lewinski, K.
Deposit date:2016-09-14
Release date:2016-09-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Ligand-dependent interaction of anticancer ruthenium complexes with hen egg white lysozyme and human lysozyme
To Be Published
5LWK
DownloadVisualize
BU of 5lwk by Molmil
MaeR response regulator bound to beryllium trifluoride
Descriptor: BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, Transcriptional regulatory protein
Authors:Miguel-Romero, L, Casino, P, Landete, J.M, Monedero, V, Zuniga, M, Marina, A.
Deposit date:2016-09-18
Release date:2017-06-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:The malate sensing two-component system MaeKR is a non-canonical class of sensory complex for C4-dicarboxylates.
Sci Rep, 7, 2017
5LY3
DownloadVisualize
BU of 5ly3 by Molmil
P. calidifontis crenactin in complex with arcadin-2 C-terminal peptide
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin-like protein, Actin/actin family protein
Authors:Izore, T, Lowe, J.
Deposit date:2016-09-23
Release date:2016-11-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crenactin forms actin-like double helical filaments regulated by arcadin-2.
Elife, 5, 2016
8HYI
DownloadVisualize
BU of 8hyi by Molmil
Crystal structure of human P-cadherin MEC12 (X dimer) in complex with 2-(2-methyl-5-phenyl-1H-indole-3-yl)ethan-1-amine
Descriptor: 2-(2-methyl-5-phenyl-1H-indole-3-yl)ethan-1-amine, CALCIUM ION, Cadherin-3, ...
Authors:Senoo, A, Ito, S, Ueno, G, Nagatoishi, S, Tsumoto, K.
Deposit date:2023-01-06
Release date:2023-08-30
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Modulation of a conformational ensemble by a small molecule that inhibits key protein-protein interactions involved in cell adhesion.
Protein Sci., 32, 2023
5LWE
DownloadVisualize
BU of 5lwe by Molmil
Crystal structure of the human CC chemokine receptor type 9 (CCR9) in complex with vercirnon
Descriptor: C-C chemokine receptor type 9, CHOLESTEROL, MALONATE ION, ...
Authors:Oswald, C, Rappas, M, Kean, J, Dore, A.S, Errey, J.C, Bennett, K, Deflorian, F, Christopher, J.A, Jazayeri, A, Mason, J.S, Congreve, M, Cooke, R.M, Marshall, F.H.
Deposit date:2016-09-16
Release date:2016-12-07
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Intracellular allosteric antagonism of the CCR9 receptor.
Nature, 540, 2016
5LWS
DownloadVisualize
BU of 5lws by Molmil
Endothiapepsin in complex with fragment 177 and a derivative thereof
Descriptor: 4-[12-[(1-chloranyl-5,6,7-trimethyl-pyrrolo[3,4-d]pyridazin-3-ium-3-yl)methyl]-10,11-dimethyl-3,4,6,7,11-pentazatricyclo[7.3.0.0^{2,6}]dodeca-1(12),2,4,7,9-pentaen-5-yl]-1,2,5-trimethyl-pyrrole-3-carbaldehyde, 4-chloranyl-5,6,7-trimethyl-pyrrolo[3,4-d]pyridazine, ACETATE ION, ...
Authors:Schiebel, J, Heine, A, Klebe, G.
Deposit date:2016-09-19
Release date:2017-08-09
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.03 Å)
Cite:A False-Positive Screening Hit in Fragment-Based Lead Discovery: Watch out for the Red Herring.
Angew. Chem. Int. Ed. Engl., 56, 2017
8IBX
DownloadVisualize
BU of 8ibx by Molmil
Structure of R2 with 3'UTR and DNA in unwinding state
Descriptor: 3'UTR, DNA (60-MER), Reverse transcriptase-like protein, ...
Authors:Deng, P, Tan, S, Wang, J, Liu, J.J.
Deposit date:2023-02-10
Release date:2023-09-20
Method:ELECTRON MICROSCOPY (3.74 Å)
Cite:Structural RNA components supervise the sequential DNA cleavage in R2 retrotransposon.
Cell, 186, 2023
8IBW
DownloadVisualize
BU of 8ibw by Molmil
Structure of R2 with 3'UTR and DNA in binding state
Descriptor: 3'UTR, DNA (60-MER), Reverse transcriptase-like protein, ...
Authors:Deng, P, Tan, S, Wang, J, Liu, J.J.
Deposit date:2023-02-10
Release date:2023-09-20
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural RNA components supervise the sequential DNA cleavage in R2 retrotransposon.
Cell, 186, 2023
8IBZ
DownloadVisualize
BU of 8ibz by Molmil
Structure of R2 with 5'ORF and 3'UTR
Descriptor: 5ORF-linker-3UTR, Reverse transcriptase-like protein, ZINC ION
Authors:Deng, P, Tan, S, Wang, J, Liu, J.J.
Deposit date:2023-02-10
Release date:2023-09-20
Method:ELECTRON MICROSCOPY (3.04 Å)
Cite:Structural RNA components supervise the sequential DNA cleavage in R2 retrotransposon.
Cell, 186, 2023
8IA3
DownloadVisualize
BU of 8ia3 by Molmil
Crystal structure of human USF2 bHLHLZ domain in complex with DNA
Descriptor: DNA (5'-D(*GP*CP*GP*CP*GP*TP*CP*AP*CP*GP*TP*GP*CP*CP*CP*GP*TP*C)-3'), DNA (5'-D(P*GP*AP*CP*GP*GP*GP*CP*AP*CP*GP*TP*GP*AP*CP*GP*CP*GP*C)-3'), Upstream stimulatory factor 2
Authors:Huang, C, Fang, P, Wang, J.
Deposit date:2023-02-07
Release date:2023-09-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Tetramerization of upstream stimulating factor USF2 requires the elongated bent leucine zipper of the bHLH-LZ domain.
J.Biol.Chem., 299, 2023
8IBY
DownloadVisualize
BU of 8iby by Molmil
Structure of R2 with 5'ORF
Descriptor: 5'ORF RNA, Reverse transcriptase-like protein, ZINC ION
Authors:Deng, P, Tan, S, Wang, J, Liu, J.J.
Deposit date:2023-02-10
Release date:2023-09-20
Method:ELECTRON MICROSCOPY (3.47 Å)
Cite:Structural RNA components supervise the sequential DNA cleavage in R2 retrotransposon.
Cell, 186, 2023
5LIO
DownloadVisualize
BU of 5lio by Molmil
Lysozyme, collected at rotation 360 degree per second
Descriptor: CHLORIDE ION, Lysozyme C
Authors:Casanas, A, Finke, A, Wang, M.
Deposit date:2016-07-15
Release date:2016-08-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.496 Å)
Cite:EIGER detector: application in macromolecular crystallography.
Acta Crystallogr D Struct Biol, 72, 2016
7K21
DownloadVisualize
BU of 7k21 by Molmil
Cryo-EM structure of pyrene-labeled ADP-Pi-actin filaments
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Chou, S.Z, Pollard, T.D.
Deposit date:2020-09-08
Release date:2020-11-04
Last modified:2020-12-02
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Cryo-electron microscopy structures of pyrene-labeled ADP-P i - and ADP-actin filaments.
Nat Commun, 11, 2020
5LWR
DownloadVisualize
BU of 5lwr by Molmil
Endothiapepsin in complex with a derivative of fragment 177
Descriptor: 1,2-ETHANEDIOL, 4-[12-[(1-chloranyl-5,6,7-trimethyl-pyrrolo[3,4-d]pyridazin-3-ium-3-yl)methyl]-10,11-dimethyl-3,4,6,7,11-pentazatricyclo[7.3.0.0^{2,6}]dodeca-1(12),2,4,7,9-pentaen-5-yl]-1,2,5-trimethyl-pyrrole-3-carbaldehyde, ACETATE ION, ...
Authors:Ehrmann, F.R, Schiebel, J, Heine, A, Klebe, G.
Deposit date:2016-09-19
Release date:2017-08-09
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.249 Å)
Cite:A False-Positive Screening Hit in Fragment-Based Lead Discovery: Watch out for the Red Herring.
Angew. Chem. Int. Ed. Engl., 56, 2017
7JUE
DownloadVisualize
BU of 7jue by Molmil
C-type carbohydrate-recognition domain 4 of the mannose receptor complexed with Man-alpha1-2Man
Descriptor: CALCIUM ION, Macrophage mannose receptor 1, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose
Authors:Weis, W.I, Feinberg, H.
Deposit date:2020-08-19
Release date:2021-02-03
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural analysis of carbohydrate binding by the macrophage mannose receptor CD206.
J.Biol.Chem., 296, 2021
7KAC
DownloadVisualize
BU of 7kac by Molmil
Crystal structure of HPK1 (MAP4K1) kinase in complex with 5-{[4-{[(1S)-2-HYDROXY-1-PHENYLETHYL]AMINO}-5-(1,3,4-OXADIAZOL-2-YL)PYRIMIDIN-2-YL]AMINO}-3,3-DIMETHYL-2-BENZOFURAN-1(3H)-ONE
Descriptor: 5-{[4-{[(1S)-2-hydroxy-1-phenylethyl]amino}-5-(1,3,4-oxadiazol-2-yl)pyrimidin-2-yl]amino}-3,3-dimethyl-2-benzofuran-1(3H)-one, Isoform 2 of Mitogen-activated protein kinase kinase kinase kinase 1
Authors:Sheriff, S.
Deposit date:2020-09-30
Release date:2021-01-13
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Using yeast surface display to engineer a soluble and crystallizable construct of hematopoietic progenitor kinase 1 (HPK1).
Acta Crystallogr.,Sect.F, 77, 2021
5LYO
DownloadVisualize
BU of 5lyo by Molmil
Crystal structure of the zymogen matriptase catalytic domain
Descriptor: SULFATE ION, Suppressor of tumorigenicity 14 protein
Authors:Hong, Z, Jensen, J.K.
Deposit date:2016-09-28
Release date:2017-10-25
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.498 Å)
Cite:Blocking the proteolytic activity of zymogen matriptase with antibody-based inhibitors.
J.Biol.Chem., 294, 2019
5LPF
DownloadVisualize
BU of 5lpf by Molmil
Kallikrein-related peptidase 10
Descriptor: Kallikrein-10, SULFATE ION
Authors:Goettig, P, Debela, M, Magdolen, V, Bode, W, Brandstetter, H.
Deposit date:2016-08-12
Release date:2016-10-05
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis for the Zn2+ inhibition of the zymogen-like kallikrein-related peptidase 10.
Biol.Chem., 397, 2016
5M3S
DownloadVisualize
BU of 5m3s by Molmil
Low-dose fixed target serial synchrotron crystallography structure of Metmyoglobin
Descriptor: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
Authors:Axford, D, Owen, R.L, Sherrell, D, Muller-Werkmeister, H.
Deposit date:2016-10-17
Release date:2016-12-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Low-dose fixed-target serial synchrotron crystallography.
Acta Crystallogr D Struct Biol, 73, 2017
7JUB
DownloadVisualize
BU of 7jub by Molmil
C-type carbohydrate-recognition domain 4 of the mannose receptor complexed with methyl-mannoside
Descriptor: CALCIUM ION, Macrophage mannose receptor 1, methyl alpha-D-mannopyranoside
Authors:Weis, W.I, Feinberg, H.
Deposit date:2020-08-19
Release date:2021-02-03
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural analysis of carbohydrate binding by the macrophage mannose receptor CD206.
J.Biol.Chem., 296, 2021
7JUF
DownloadVisualize
BU of 7juf by Molmil
C-type carbohydrate-recognition domain 4 of the mannose receptor complexed with Man-alpha1-2Man
Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, Macrophage mannose receptor 1, ...
Authors:Weis, W.I, Feinberg, H.
Deposit date:2020-08-19
Release date:2021-02-03
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural analysis of carbohydrate binding by the macrophage mannose receptor CD206.
J.Biol.Chem., 296, 2021

226262

数据于2024-10-16公开中

PDB statisticsPDBj update infoContact PDBjnumon