PDB: 10940 resultsInfo pagesStatus searchChemie searchBIRD

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5X4Q	Crystal structure of the BCL6 BTB domain in complex with Compound 7 Descriptor: 1,2-ETHANEDIOL, 5-[[5-chloranyl-2-(pyridin-3-ylmethylamino)pyrimidin-4-yl]amino]-1,3-dihydroindol-2-one, B-cell lymphoma 6 protein, ... Authors: Sogabe, S, Ida, K, Lane, W, Snell, G. Deposit date: 2017-02-13 Release date: 2017-05-24 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2 Å) Cite: Discovery of a B-Cell Lymphoma 6 Protein-Protein Interaction Inhibitor by a Biophysics-Driven Fragment-Based Approach J. Med. Chem., 60, 2017
5X9P	Crystal structure of the BCL6 BTB domain in complex with Compound 5 Descriptor: 3-[[4-chloranyl-2-nitro-5-[(2-oxidanylidene-1,3-dihydrobenzimidazol-5-yl)amino]phenyl]amino]propanoic acid, B-cell lymphoma 6 protein Authors: Sogabe, S, Ida, K, Lane, W, Snell, G. Deposit date: 2017-03-08 Release date: 2017-08-16 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.86 Å) Cite: Discovery of a novel B-cell lymphoma 6 (BCL6)-corepressor interaction inhibitor by utilizing structure-based drug design Bioorg. Med. Chem., 25, 2017
5X4P	Crystal structure of the BCL6 BTB domain in complex with Compound 6 Descriptor: 5-[(5-chloranylpyrimidin-4-yl)amino]-1,3-dihydroindol-2-one, B-cell lymphoma 6 protein Authors: Sogabe, S, Ida, K, Lane, W, Snell, G. Deposit date: 2017-02-13 Release date: 2017-05-24 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.06 Å) Cite: Discovery of a B-Cell Lymphoma 6 Protein-Protein Interaction Inhibitor by a Biophysics-Driven Fragment-Based Approach J. Med. Chem., 60, 2017
6CVJ	Model of synthetic tau (four tandem repeats of first repeat sequence) bound to the microtubule Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Nogales, E, Kellogg, E.H. Deposit date: 2018-03-28 Release date: 2018-05-23 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Near-atomic model of microtubule-tau interactions. Science, 360, 2018
1Q8J	Cobalamin-dependent methionine synthase (1-566) from Thermotoga maritima (Cd2+, Hcy, methyltetrahydrofolate complex) Descriptor: 2-AMINO-4-MERCAPTO-BUTYRIC ACID, 5-METHYL-5,6,7,8-TETRAHYDROFOLIC ACID, 5-methyltetrahydrofolate S-homocysteine methyltransferase, ... Authors: Evans, J.C, Huddler, D.P, Hilgers, M.T, Romanchuk, G, Matthews, R.G, Ludwig, M.L. Deposit date: 2003-08-21 Release date: 2004-03-23 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structures of the N-terminal modules imply large domain motions during catalysis by methionine synthase. Proc.Natl.Acad.Sci.Usa, 101, 2004
6CYF	PcrV fragment with bound Fab Descriptor: IgG1 antibody, heavy chain fragment, kappa light chain, ... Authors: Oganesyan, V. Deposit date: 2018-04-05 Release date: 2018-08-01 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.78 Å) Cite: Pseudomonas aeruginosa PcrV and Psl, the Molecular Targets of Bispecific Antibody MEDI3902, Are Conserved Among Diverse Global Clinical Isolates. J. Infect. Dis., 218, 2018
4XIV	Kinase and Dimerization (P3P4) of the Thermotoga maritima CheA kinase Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chemotaxis protein CheA, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER Authors: Greenswag, A.R, Crane, B.R. Deposit date: 2015-01-07 Release date: 2015-11-04 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (3 Å) Cite: Conformational Transitions that Enable Histidine Kinase Autophosphorylation and Receptor Array Integration. J.Mol.Biol., 427, 2015
1Q7Z	Cobalamin-dependent methionine synthase (1-566) from Thermotoga maritima (Cd2+ complex) Descriptor: 5-methyltetrahydrofolate S-homocysteine methyltransferase, CADMIUM ION Authors: Evans, J.C, Huddler, D.P, Hilgers, M.T, Romanchuk, G, Matthews, R.G, Ludwig, M.L. Deposit date: 2003-08-20 Release date: 2004-03-23 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structures of the N-terminal modules imply large domain motions during catalysis by methionine synthase. Proc.Natl.Acad.Sci.Usa, 101, 2004
5H0U	Crystal structure of the catalytic domain of membrane type 1 matrix metalloproteinase Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, GLYCEROL, ... Authors: Ogata, H, Decaneto, E, Lubitz, W. Deposit date: 2016-10-07 Release date: 2017-10-04 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.239 Å) Cite: Solvent water interactions within the active site of the membrane type I matrix metalloproteinase. Phys Chem Chem Phys, 19, 2017
6EC7	Glutamylation domain, TbtB, from thiomuracin biosynthesis Descriptor: Lantibiotic dehydratase domain protein Authors: Cogan, D.P, Nair, S.K. Deposit date: 2018-08-07 Release date: 2019-08-14 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Characterization of glutamyl-tRNA-dependent dehydratases using nonreactive substrate mimics. Proc.Natl.Acad.Sci.USA, 116, 2019
5H5Q	Crystal structure of human GPX4 in complex with GXpep-1 Descriptor: GLYCEROL, GXpep-1, Phospholipid hydroperoxide glutathione peroxidase, ... Authors: Sogabe, S, Kadotani, A, Lane, W, Snell, G. Deposit date: 2016-11-09 Release date: 2016-12-07 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.1 Å) Cite: Discovery of GPX4 inhibitory peptides from random peptide T7 phage display and subsequent structural analysis Biochem. Biophys. Res. Commun., 482, 2017
5H7H	Crystal structure of the BCL6 BTB domain in complex with F1324(10-13) Descriptor: 1,2-ETHANEDIOL, B-cell lymphoma 6 protein, F1324 peptide residues 10-13 Authors: Sogabe, S, Ida, K, Lane, W, Snell, G. Deposit date: 2016-11-18 Release date: 2016-12-07 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Discovery of high-affinity BCL6-binding peptide and its structure-activity relationship. Biochem. Biophys. Res. Commun., 482, 2017
4YS0	Conformational changes of the clamp of the protein translocation ATPase SecA from Thermotoga maritima Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Protein translocase subunit SecA Authors: Chen, Y, Rapoport, T.A. Deposit date: 2015-03-16 Release date: 2015-06-03 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.897 Å) Cite: Conformational Changes of the Clamp of the Protein Translocation ATPase SecA. J.Mol.Biol., 427, 2015
6EC8	Glutamylation domain, TbtB, from thiomuracin biosynthesis bound to 5'-phosphodesmethylglutamycin Descriptor: 3'-deoxy-3'-[(L-alpha-glutamyl)amino]adenosine 5'-(dihydrogen phosphate), Lantibiotic dehydratase domain protein Authors: Cogan, D.P, Nair, S.K. Deposit date: 2018-08-07 Release date: 2019-06-19 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.148 Å) Cite: Characterization of glutamyl-tRNA-dependent dehydratases using nonreactive substrate mimics. Proc.Natl.Acad.Sci.USA, 116, 2019
1Q85	Cobalamin-dependent methionine synthase (1-566) from Thermotoga maritima (Cd2+ complex, Se-Met) Descriptor: 5-methyltetrahydrofolate S-homocysteine methyltransferase, CADMIUM ION Authors: Evans, J.C, Huddler, D.P, Hilgers, M.T, Romanchuk, G, Matthews, R.G, Ludwig, M.L. Deposit date: 2003-08-20 Release date: 2004-03-23 Last modified: 2017-10-11 Method: X-RAY DIFFRACTION (2 Å) Cite: Structures of the N-terminal modules imply large domain motions during catalysis by methionine synthase. Proc.Natl.Acad.Sci.Usa, 101, 2004
5HWZ	Crystal structure of nitrophorin 4 D30N mutant with nitrite Descriptor: NITRITE ION, Nitrophorin-4, PROTOPORPHYRIN IX CONTAINING FE Authors: Ogata, H, He, C, Lubitz, W. Deposit date: 2016-01-29 Release date: 2016-05-04 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.45 Å) Cite: Elucidation of the heme active site electronic structure affecting the unprecedented nitrite dismutase activity of the ferrihemebproteins, the nitrophorins. Chem Sci, 7, 2016
6GMF	Structure of Cytochrome P450 CYP109Q5 from Chondromyces apiculatus Descriptor: PROTOPORPHYRIN IX CONTAINING FE, Putative cytochrome P450 hydroxylase Authors: Grogan, G, Dubiel, P, Sharma, M, Klenk, J, Hauer, B. Deposit date: 2018-05-25 Release date: 2019-03-27 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Characterization and structure-guided engineering of the novel versatile terpene monooxygenase CYP109Q5 from Chondromyces apiculatus DSM436. Microb Biotechnol, 12, 2019
5H7G	Crystal structure of the BCL6 BTB domain in complex with F1324 Descriptor: B-cell lymphoma 6 protein, F1324 peptide, SULFATE ION Authors: Sogabe, S, Ida, K, Lane, W, Snell, G. Deposit date: 2016-11-18 Release date: 2016-12-07 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Discovery of high-affinity BCL6-binding peptide and its structure-activity relationship. Biochem. Biophys. Res. Commun., 482, 2017
5H5R	Crystal structure of human GPX4 in complex with GXpep-2 Descriptor: GLYCEROL, GXpep-2, Phospholipid hydroperoxide glutathione peroxidase, ... Authors: Sogabe, S, Kadotani, A, Lane, W, Snell, G. Deposit date: 2016-11-09 Release date: 2016-12-07 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.2 Å) Cite: Discovery of GPX4 inhibitory peptides from random peptide T7 phage display and subsequent structural analysis Biochem. Biophys. Res. Commun., 482, 2017
5H5S	Crystal structure of human GPX4 in complex with GXpep-3 Descriptor: GLYCEROL, GXpep-3, Phospholipid hydroperoxide glutathione peroxidase, ... Authors: Sogabe, S, Kadotani, A, Lane, W, Snell, G. Deposit date: 2016-11-09 Release date: 2016-12-07 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Discovery of GPX4 inhibitory peptides from random peptide T7 phage display and subsequent structural analysis Biochem. Biophys. Res. Commun., 482, 2017
6IAQ	Structure of Amine Dehydrogenase from Mycobacterium smegmatis Descriptor: 1,2-ETHANEDIOL, Dihydrodipicolinate reductase N-terminus domain-containing protein, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Grogan, G, Vaxelaire-Vergne, C, Beloti, L, Mayol, O. Deposit date: 2018-11-27 Release date: 2019-03-27 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.91 Å) Cite: A family of native amine dehydrogenases for the asymmetric reductive amination of ketones Nat Catal, 2019
1O27	Crystal structure of Thymidylate Synthase Complementing Protein (TM0449) from Thermotoga maritima with FAD and BrdUMP at 2.3 A resolution Descriptor: 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE, FLAVIN-ADENINE DINUCLEOTIDE, Thymidylate synthase thyX Authors: Mathews, I.I, Deacon, A.M, Canaves, J.M, McMullan, D, Lesley, S.A, Agarwalla, S, Kuhn, P, Joint Center for Structural Genomics (JCSG) Deposit date: 2003-02-18 Release date: 2003-06-24 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Functional Analysis of Substrate and Cofactor Complex Structures of a Thymidylate Synthase-Complementing Protein Structure, 11, 2003
6CVN	Model of synthetic tau (R2x4) bound to the microtubule Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Nogales, E, Kellogg, E.H. Deposit date: 2018-03-28 Release date: 2018-05-23 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Near-atomic model of microtubule-tau interactions. Science, 360, 2018
1O25	Crystal structure of Thymidylate Synthase Complementing Protein (TM0449) from Thermotoga maritima with dUMP at 2.4 A resolution Descriptor: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, Thymidylate synthase thyX Authors: Mathews, I.I, Deacon, A.M, Canaves, J.M, McMullan, D, Lesley, S.A, Agarwalla, S, Kuhn, P, Joint Center for Structural Genomics (JCSG) Deposit date: 2003-02-20 Release date: 2003-06-24 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Functional Analysis of Substrate and Cofactor Complex Structures of a Thymidylate Synthase-Complementing Protein Structure, 11, 2003
1O26	Crystal structure of Thymidylate Synthase Complementing Protein (TM0449) from Thermotoga maritima with FAD and dUMP at 1.6 A resolution Descriptor: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, FLAVIN-ADENINE DINUCLEOTIDE, TRIETHYLENE GLYCOL, ... Authors: Mathews, I.I, Deacon, A.M, Canaves, J.M, McMullan, D, Lesley, S.A, Agarwalla, S, Kuhn, P, Joint Center for Structural Genomics (JCSG) Deposit date: 2003-02-18 Release date: 2003-06-24 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Functional Analysis of Substrate and Cofactor Complex Structures of a Thymidylate Synthase-Complementing Protein Structure, 11, 2003

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