PDB: 72372 resultsInfo pagesStatus searchChemie searchBIRD

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1IPA	CRYSTAL STRUCTURE OF RNA 2'-O RIBOSE METHYLTRANSFERASE Descriptor: RNA 2'-O-RIBOSE METHYLTRANSFERASE Authors: Nureki, O, Shirouzu, M, Hashimoto, K, Ishitani, R, Terada, T, Tamakoshi, M, Oshima, T, Chijimatsu, M, Takio, K, Vassylyev, D.G, Shibata, T, Inoue, Y, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2001-05-02 Release date: 2002-07-10 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.4 Å) Cite: An enzyme with a deep trefoil knot for the active-site architecture. Acta Crystallogr.,Sect.D, 58, 2002
3P9Y	Crystal structure of the Drosophila melanogaster Ssu72-pCTD complex Descriptor: CG14216, IMIDAZOLE, TETRAETHYLENE GLYCOL, ... Authors: Werner-Allen, J.W, Zhou, P. Deposit date: 2010-10-18 Release date: 2010-12-15 Last modified: 2016-08-17 Method: X-RAY DIFFRACTION (2.1 Å) Cite: cis-Proline-mediated Ser(P)5 Dephosphorylation by the RNA Polymerase II C-terminal Domain Phosphatase Ssu72. J.Biol.Chem., 286, 2011
3H4B	Ternary complex of human DNA polymerase iota with template U/T and incoming dATP Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 5'-D(*AP*GP*GP*AP*CP*CP*(DOC))-3', 5'-D(*TP*(BRU)P*GP*GP*GP*TP*CP*CP*T)-3', ... Authors: Jain, R, Nair, D.T, Johnson, R.E, Prakash, L, Prakash, S, Aggarwal, A.K. Deposit date: 2009-04-18 Release date: 2009-07-21 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Replication across template T/U by human DNA polymerase-iota. Structure, 17, 2009
3H4D	Ternary complex of human DNA polymerase iota with template U/T and incoming dGTP Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*AP*GP*GP*AP*CP*CP*(DOC)), 5'-D(*TP*(BRU)P*GP*GP*GP*TP*CP*CP*T), ... Authors: Jain, R, Nair, D.T, Johnson, R.E, Prakash, L, Prakash, S, Aggarwal, A.K. Deposit date: 2009-04-18 Release date: 2009-07-21 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Replication across template T/U by human DNA polymerase-iota. Structure, 17, 2009
6XKD	Structure of ligand-bound mouse cGAMP hydrolase ENPP1 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, CHLORIDE ION, ... Authors: Fernandez, D, Li, L. Deposit date: 2020-06-26 Release date: 2021-06-02 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Structure-Aided Development of Small-Molecule Inhibitors of ENPP1, the Extracellular Phosphodiesterase of the Immunotransmitter cGAMP. Cell Chem Biol, 27, 2020
1R4G	Solution structure of the Sendai virus protein X C-subdomain Descriptor: RNA polymerase alpha subunit Authors: Blanchard, L, Tarbouriech, N, Blackledge, M, Timmins, P, Burmeister, W.P, Ruigrok, R.W, Marion, D. Deposit date: 2003-10-06 Release date: 2004-03-09 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structure and dynamics of the nucleocapsid-binding domain of the Sendai virus phosphoprotein in solution Virology, 319, 2004
1Q0T	Ternary Structure of T4DAM with AdoHcy and DNA Descriptor: 5'-D(*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*T)-3', DNA adenine methylase, IODIDE ION, ... Authors: Yang, Z, Horton, J.R, Zhou, L, Zhang, X.J, Dong, A, Zhang, X, Schlagman, S.L, Kossykh, V, Hattman, S, Cheng, X. Deposit date: 2003-07-17 Release date: 2003-09-23 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Structure of the bacteriophage T4 DNA adenine methyltransferase Nat.Struct.Biol., 10, 2003
7ZHR	Complex structure of drosophila Unr CSD789 and pAbp RRM3 Descriptor: Polyadenylate-binding protein, Upstream of N-ras, isoform A Authors: Hollmann, N.M, Jagtap, P.K.A, Hennig, J. Deposit date: 2022-04-07 Release date: 2022-12-07 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.99 Å) Cite: Upstream of N-Ras C-terminal cold shock domains mediate poly(A) specificity in a novel RNA recognition mode and bind poly(A) binding protein. Nucleic Acids Res., 51, 2023
3RJE	Ternary complex of DNA Polymerase Beta with a gapped DNA containing 8odG at template position Descriptor: DNA (5'-D(*CP*CP*GP*AP*CP*(8OG)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... Authors: Batra, V.K, Beard, W.A, Wilson, S.H. Deposit date: 2011-04-15 Release date: 2012-01-18 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Binary complex crystal structure of DNA polymerase beta reveals multiple conformations of the templating 8-oxoguanine lesion Proc.Natl.Acad.Sci.USA, 109, 2012
3RJJ	Ternary complex crystal structure of DNA Polymerase Beta with template 8odG provides insight into mutagenic lesion bypass Descriptor: DNA (5'-D(*CP*CP*GP*AP*CP*GP*(8OG)P*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... Authors: Batra, V.K, Beard, W.A, Wilson, S.H. Deposit date: 2011-04-15 Release date: 2012-01-18 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2 Å) Cite: Binary complex crystal structure of DNA polymerase beta reveals multiple conformations of the templating 8-oxoguanine lesion. Proc.Natl.Acad.Sci.USA, 109, 2012
1GUC	SOLUTION NMR STRUCTURE OF AN RNA WITH TANDEM, SYMMETRIC GU MISMATCHES, 30 STRUCTURES Descriptor: RNA (5'-R(*GP*AP*GP*GP*UP*CP*UP*C)-3') Authors: Mcdowell, J.A, Turner, D.H. Deposit date: 1996-08-23 Release date: 1997-02-12 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Investigation of the structural basis for thermodynamic stabilities of tandem GU mismatches: solution structure of (rGAGGUCUC)2 by two-dimensional NMR and simulated annealing. Biochemistry, 35, 1996
3RJK	Ternary complex of DNA Polymerase Beta with a gapped DNA containing 8odG:dC base pair at primer terminus and dG:dCMP(CF2)PP in the active site Descriptor: 2'-deoxy-5'-O-[(S)-{difluoro[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}(hydroxy)phosphoryl]cytidine, CHLORIDE ION, DNA (5'-D(*CP*CP*GP*AP*CP*GP*(8OG)P*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), ... Authors: Batra, V.K, Beard, W.A, Wilson, S.H. Deposit date: 2011-04-15 Release date: 2012-01-18 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Binary complex crystal structure of DNA polymerase beta reveals multiple conformations of the templating 8-oxoguanine lesion. Proc.Natl.Acad.Sci.USA, 109, 2012
3RJI	Ternary complex of DNA Polymerase Beta with a gapped DNA containing 8odG at template position paired with non-hydrolyzable dCTP analog (dCMP(CF2)PP) Descriptor: 2'-deoxy-5'-O-[(S)-{difluoro[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}(hydroxy)phosphoryl]cytidine, CHLORIDE ION, DNA (5'-D(*CP*CP*GP*AP*CP*(8OG)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), ... Authors: Batra, V.K, Beard, W.A, Wilson, S.H. Deposit date: 2011-04-15 Release date: 2012-01-18 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Binary complex crystal structure of DNA polymerase beta reveals multiple conformations of the templating 8-oxoguanine lesion Proc.Natl.Acad.Sci.USA, 109, 2012
3RJH	Ternary complex of DNA Polymerase Beta with a gapped DNA containing (syn)8odG:dA at primer terminus and dG:dCMP(CF2)PPin the active site Descriptor: 2'-deoxy-5'-O-[(S)-{difluoro[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}(hydroxy)phosphoryl]cytidine, CHLORIDE ION, DNA (5'-D(*CP*CP*GP*AP*CP*GP*(8OG)P*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), ... Authors: Batra, V.K, Beard, W.A, Wilson, S.H. Deposit date: 2011-04-15 Release date: 2012-01-18 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Binary complex crystal structure of DNA polymerase beta reveals multiple conformations of the templating 8-oxoguanine lesion Proc.Natl.Acad.Sci.USA, 109, 2012
3RJF	Ternary complex of DNA Polymerase Beta with a gapped DNA containing (syn)8odG at template position paired with non-hydrolyzable dATP analog (dApCPP) Descriptor: 2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]adenosine, CHLORIDE ION, DNA (5'-D(*CP*CP*GP*AP*CP*(8OG)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), ... Authors: Batra, V.K, Beard, W.A, Wilson, S.H. Deposit date: 2011-04-15 Release date: 2012-01-18 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Binary complex crystal structure of DNA polymerase beta reveals multiple conformations of the templating 8-oxoguanine lesion Proc.Natl.Acad.Sci.USA, 109, 2012
2RO2	Solution structure of domain I of the negative polarity CChMVd hammerhead ribozyme Descriptor: RNA (5'-R(*GP*GP*GP*AP*GP*AP*CP*CP*UP*GP*AP*AP*GP*UP*GP*GP*GP*UP*UP*UP*CP*CP*C)-3') Authors: Gallego, J, Dufour, D, Gago, S, de la Pena, M, Flores, R. Deposit date: 2008-03-05 Release date: 2008-12-30 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Structure-function analysis of the ribozymes of chrysanthemum chlorotic mottle viroid: a loop-loop interaction motif conserved in most natural hammerheads Nucleic Acids Res., 37, 2009
2NCR	Structural insight for dynamics of r(CGG) motif RNA found in Fragile X syndrome/ Fragile X tremor ataxia at 25 degree C Descriptor: RNA_(5'-R(P*CP*CP*GP*CP*GP*GP*CP*GP*G)-3') Authors: Kumar, A, Mishra, S.K. Deposit date: 2016-04-12 Release date: 2017-04-19 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structural insights reveal the dynamics of the repeating r(CGG) motif found in Fragile X Syndrome and Fragile-X associated tremor/ataxia syndrome (FXTAS) To be Published
2LEC	Solution structure of human SRSF2 (SC35) RRM in complex with 5'-UGGAGU-3' Descriptor: RNA (5'-R(*UP*GP*GP*AP*GP*U)-3'), Serine/arginine-rich splicing factor 2 Authors: Daubner, G.M, Clery, A, Jayne, S, Stevenin, J, Allain, F.H.-T. Deposit date: 2011-06-15 Release date: 2011-11-23 Last modified: 2024-05-08 Method: SOLUTION NMR Cite: A syn-anti conformational difference allows SRSF2 to recognize guanines and cytosines equally well. Embo J., 31, 2012
2LEB	Solution structure of human SRSF2 (SC35) RRM in complex with 5'-UCCAGU-3' Descriptor: RNA (5'-R(*UP*CP*CP*AP*GP*U)-3'), Serine/arginine-rich splicing factor 2 Authors: Daubner, G.M, Clery, A, Jayne, S, Stevenin, J, Allain, F.H.-T. Deposit date: 2011-06-15 Release date: 2011-11-23 Last modified: 2024-05-08 Method: SOLUTION NMR Cite: A syn-anti conformational difference allows SRSF2 to recognize guanines and cytosines equally well. Embo J., 31, 2012
4KHS	Ternary complex of RB69 mutant L415F with a ribonucleotide at 0 position Descriptor: CALCIUM ION, CHLORIDE ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*CP*C)-3'), ... Authors: Clausen, A.R, Pedersen, L.C. Deposit date: 2013-05-01 Release date: 2013-10-09 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.12 Å) Cite: Structure-function analysis of ribonucleotide bypass by B family DNA replicases. Proc.Natl.Acad.Sci.USA, 110, 2013
4KHU	Ternary complex of rb69 mutant L415F with a ribonucleotide at -1 position Descriptor: CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*CP*C)-3'), DNA polymerase, ... Authors: Clausen, A.R, Pedersen, L.C. Deposit date: 2013-05-01 Release date: 2013-10-09 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Structure-function analysis of ribonucleotide bypass by B family DNA replicases. Proc.Natl.Acad.Sci.USA, 110, 2013
4KHW	Ternary complex of RB69 mutant L415F with ribonucleotide at -2 position Descriptor: CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*CP*C)-3'), DNA polymerase, ... Authors: Clausen, A.R, Pedersen, L.C. Deposit date: 2013-05-01 Release date: 2013-10-09 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.371 Å) Cite: Structure-function analysis of ribonucleotide bypass by B family DNA replicases. Proc.Natl.Acad.Sci.USA, 110, 2013
4KI4	Ternary complex of rb69 mutant L415F with ribonucleotides at 0 and -1 position Descriptor: CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*CP*C)-3'), DNA polymerase, ... Authors: Clausen, A.R, Pedersen, L.C. Deposit date: 2013-05-01 Release date: 2013-10-09 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Structure-function analysis of ribonucleotide bypass by B family DNA replicases. Proc.Natl.Acad.Sci.USA, 110, 2013
4KI6	Ternary complex of rb69 mutant l415f with ribonucleotides at -1 and -2 position Descriptor: CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*CP*C)-3'), DNA polymerase, ... Authors: Clausen, A.R, Pedersen, L.C. Deposit date: 2013-05-01 Release date: 2013-10-09 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.55 Å) Cite: Structure-function analysis of ribonucleotide bypass by B family DNA replicases. Proc.Natl.Acad.Sci.USA, 110, 2013
4KHY	Ternary complex of rb69 mutant L415F with ribonucleotide at -3 position Descriptor: CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*CP*C)-3'), DNA polymerase, ... Authors: Clausen, A.R, Pedersen, L.C. Deposit date: 2013-05-01 Release date: 2013-10-09 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Structure-function analysis of ribonucleotide bypass by B family DNA replicases. Proc.Natl.Acad.Sci.USA, 110, 2013

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