Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9DUI
DownloadVisualize
BU of 9dui by Molmil
Re-refined of Crystal structure of dopa decarboxylase in complex with the inhibitor carbidopa (1JS3) with ketoenamine form of carbidopa
Descriptor: (2S)-3-(3,4-dihydroxyphenyl)-2-[(2E)-2-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)hydrazin-1-yl]-2-methylpropanoic acid, Aromatic-L-amino-acid decarboxylase, SULFATE ION
Authors:Doukov, I.T, Berkowitz, B.D.
Deposit date:2024-10-03
Release date:2025-09-10
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:alpha-Hydrazino Acids Inhibit Pyridoxal Phosphate-Dependent Decarboxylases via "Catalytically Correct" Ketoenamine Tautomers: A Special Motif for Chemical Biology and Drug Discovery?
Acs Catalysis, 15, 2025
7SGC
DownloadVisualize
BU of 7sgc by Molmil
Replication Initiator Protein REPE54 and cognate DNA sequence with terminal five prime phosphates.
Descriptor: DNA (5'-D(P*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*G)-3'), DNA (5'-D(P*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*GP*G)-3'), MAGNESIUM ION, ...
Authors:Ward, A.R, Snow, C.D.
Deposit date:2021-10-05
Release date:2021-10-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Stabilizing DNA-Protein Co-Crystals via Intra-Crystal Chemical Ligation of the DNA
Crystals, 12, 2022
7SQM
DownloadVisualize
BU of 7sqm by Molmil
Discovery and Preclinical Pharmacology of INE963, A Potent and Fast-Acting Blood-Stage Antimalarial with a High Barrier to Resistance and Potential for Single-Dose Cure in Uncomplicated Malaria
Descriptor: 1-[(4S)-5-(2,4-difluorophenyl)imidazo[2,1-b][1,3,4]thiadiazol-2-yl]-4-methylpiperidin-4-amine, GLYCEROL, Serine/threonine-protein kinase haspin
Authors:Shu, W, Yokokawa, F.
Deposit date:2021-11-05
Release date:2021-12-29
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Failure of artesunate-mefloquine combination therapy for uncompli-cated Plasmodium falciparum malaria in southern Cambodia.
Malar. J., 2009, 8, 10, 2009
9IYK
DownloadVisualize
BU of 9iyk by Molmil
Crystal structure of hSOD1 in C121 space group
Descriptor: ACETATE ION, COPPER (II) ION, SULFATE ION, ...
Authors:Yapici, I, DeMirci, H.
Deposit date:2024-07-30
Release date:2024-08-14
Last modified:2025-05-28
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Structural Insights into the Dynamics of Water in SOD1 Catalysis and Drug Interactions.
Int J Mol Sci, 26, 2025
6ZFW
DownloadVisualize
BU of 6zfw by Molmil
X-ray structure of the soluble N-terminal domain of T. cruzi PEX-14
Descriptor: ACETATE ION, BETA-MERCAPTOETHANOL, GLYCEROL, ...
Authors:Softley, C.A, Ostertag, M.O, Sattler, M, Popowicz, G.P.
Deposit date:2020-06-18
Release date:2020-12-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Deep learning model predicts water interaction sites on the surface of proteins using limited-resolution data.
Chem.Commun.(Camb.), 56, 2020
7YM1
DownloadVisualize
BU of 7ym1 by Molmil
Structure of SsbA protein in complex with the anticancer drug 5-fluorouracil
Descriptor: 5-FLUOROURACIL, GLYCEROL, Single-stranded DNA-binding protein
Authors:Huang, Y.H, Yang, P.C, Chiang, W.Y, Lin, E.S, Huang, C.Y.
Deposit date:2022-07-27
Release date:2023-08-02
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Crystal Structure of DNA Replication Protein SsbA Complexed with the Anticancer Drug 5-Fluorouracil.
Int J Mol Sci, 24, 2023
7CA0
DownloadVisualize
BU of 7ca0 by Molmil
Crystal structure of dihydroorotase in complex with 5-fluoroorotic acid from Saccharomyces cerevisiae
Descriptor: 5-FLUORO-2,6-DIOXO-1,2,3,6-TETRAHYDROPYRIMIDINE-4-CARBOXYLIC ACID, Dihydroorotase, ZINC ION
Authors:Guan, H.H, Huang, Y.H, Huang, C.Y, Chen, C.J.
Deposit date:2020-06-08
Release date:2021-06-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Complexed Crystal Structure of Saccharomyces cerevisiae Dihydroorotase with Inhibitor 5-Fluoroorotate Reveals a New Binding Mode.
Bioinorg Chem Appl, 2021, 2021
7CA1
DownloadVisualize
BU of 7ca1 by Molmil
Crystal structure of dihydroorotase in complex with plumbagin from Saccharomyces cerevisiae
Descriptor: (2S)-2-hydroxybutanedioic acid, 5-hydroxy-2-methylnaphthalene-1,4-dione, Dihydroorotase, ...
Authors:Guan, H.H, Huang, Y.H, Huang, C.Y, Chen, C.J.
Deposit date:2020-06-08
Release date:2021-06-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Plumbagin, a Natural Product with Potent Anticancer Activities, Binds to and Inhibits Dihydroorotase, a Key Enzyme in Pyrimidine Biosynthesis.
Int J Mol Sci, 22, 2021
9EAT
DownloadVisualize
BU of 9eat by Molmil
High-Resolution Structure of Escherichia coli Carbonic Anhydrase 2 in Space Group P4(2)2(1)2
Descriptor: Carbonic anhydrase 2, ZINC ION
Authors:Rankin, M.R, Smith, J.L.
Deposit date:2024-11-11
Release date:2024-11-20
Last modified:2025-02-12
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Serendipitous high-resolution structure of Escherichia coli carbonic anhydrase 2.
Acta Crystallogr.,Sect.F, 81, 2025
9EBZ
DownloadVisualize
BU of 9ebz by Molmil
Escherichia coli Carbonic Anhydrase 2 in Space Group C222(1)
Descriptor: Carbonic anhydrase, ZINC ION
Authors:Rankin, M.R, Smith, J.L.
Deposit date:2024-11-13
Release date:2024-11-20
Last modified:2025-02-12
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:Serendipitous high-resolution structure of Escherichia coli carbonic anhydrase 2.
Acta Crystallogr.,Sect.F, 81, 2025
9EAW
DownloadVisualize
BU of 9eaw by Molmil
Escherichia coli Carbonic Anhydrase 2 in Space Group P2(1)2(1)2
Descriptor: Carbonic anhydrase, ZINC ION
Authors:Rankin, M.R, Smith, J.L.
Deposit date:2024-11-11
Release date:2024-11-20
Last modified:2025-02-12
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Serendipitous high-resolution structure of Escherichia coli carbonic anhydrase 2.
Acta Crystallogr.,Sect.F, 81, 2025
7CET
DownloadVisualize
BU of 7cet by Molmil
Crystal structure of D-cycloserine-bound form of cysteine desulfurase NifS from Helicobacter pylori
Descriptor: (5-hydroxy-6-methyl-4-{[(3-oxo-2,3-dihydro-1,2-oxazol-4-yl)amino]methyl}pyridin-3-yl)methyl dihydrogen phosphate, CHLORIDE ION, Cysteine desulfurase IscS, ...
Authors:Nakamura, R, Takahashi, Y, Fujishiro, T.
Deposit date:2020-06-24
Release date:2021-06-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Cycloserine enantiomers inhibit PLP-dependent cysteine desulfurase SufS via distinct mechanisms.
Febs J., 2022
7CEQ
DownloadVisualize
BU of 7ceq by Molmil
Crystal structure of cysteine desulfurase SufS H121A from Bacillus subtilis
Descriptor: Cysteine desulfurase SufS, DI(HYDROXYETHYL)ETHER
Authors:Nakamura, R, Takahashi, Y, Fujishiro, T.
Deposit date:2020-06-24
Release date:2021-06-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Cycloserine enantiomers inhibit PLP-dependent cysteine desulfurase SufS via distinct mechanisms.
Febs J., 2022
7CER
DownloadVisualize
BU of 7cer by Molmil
Crystal structure of D-cycloserine-bound form of cysteine desulfurase SufS H121A from Bacillus subtilis
Descriptor: Cysteine desulfurase SufS, D-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-N,O-CYCLOSERYLAMIDE, DI(HYDROXYETHYL)ETHER, ...
Authors:Nakamura, R, Takahashi, Y, Fujishiro, T.
Deposit date:2020-06-24
Release date:2021-06-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Cycloserine enantiomers inhibit PLP-dependent cysteine desulfurase SufS via distinct mechanisms.
Febs J., 2022
9JS5
DownloadVisualize
BU of 9js5 by Molmil
Crystal structure of the ASFV-derived histone-like protein pA104R
Descriptor: 1,2-ETHANEDIOL, SULFATE ION, Viral histone-like protein
Authors:Li, Q, Shao, H, Yi, D, Cen, S.
Deposit date:2024-09-30
Release date:2025-04-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Thonningianin A disrupts pA104R-DNA binding and inhibits African swine fever virus replication.
Emerg Microbes Infect, 14, 2025
7CEP
DownloadVisualize
BU of 7cep by Molmil
Crystal structure of L-cycloserine-bound form of cysteine desulfurase SufS from Bacillus subtilis
Descriptor: (5-hydroxy-6-methyl-4-{[(3-oxo-2,3-dihydro-1,2-oxazol-4-yl)amino]methyl}pyridin-3-yl)methyl dihydrogen phosphate, Cysteine desulfurase SufS, DI(HYDROXYETHYL)ETHER, ...
Authors:Nakamura, R, Yasuhiro, T, Fujishiro, T.
Deposit date:2020-06-24
Release date:2021-06-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Cycloserine enantiomers inhibit PLP-dependent cysteine desulfurase SufS via distinct mechanisms.
Febs J., 2022
7CEO
DownloadVisualize
BU of 7ceo by Molmil
Crystal structure of PMP-bound form of cysteine desulfurase SufS from Bacillus subtilis
Descriptor: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, Cysteine desulfurase SufS, DI(HYDROXYETHYL)ETHER
Authors:Nakamura, R, Takahashi, Y, Fujishiro, T.
Deposit date:2020-06-24
Release date:2021-06-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Cycloserine enantiomers inhibit PLP-dependent cysteine desulfurase SufS via distinct mechanisms.
Febs J., 2022
7CEU
DownloadVisualize
BU of 7ceu by Molmil
Crystal structure of L-cycloserine-bound form of cysteine desulfurase NifS from Helicobacter pylori
Descriptor: (5-hydroxy-6-methyl-4-{[(3-oxo-2,3-dihydro-1,2-oxazol-4-yl)amino]methyl}pyridin-3-yl)methyl dihydrogen phosphate, Cysteine desulfurase IscS, ISOPROPYL ALCOHOL
Authors:Nakamura, R, Takahashi, Y, Fujishiro, T.
Deposit date:2020-06-24
Release date:2021-06-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Cycloserine enantiomers inhibit PLP-dependent cysteine desulfurase SufS via distinct mechanisms.
Febs J., 2022
7CES
DownloadVisualize
BU of 7ces by Molmil
Crystal structure of L-cycloserine-bound form of cysteine desulfurase SufS H121A from Bacillus subtilis
Descriptor: (5-hydroxy-6-methyl-4-{[(3-oxo-2,3-dihydro-1,2-oxazol-4-yl)amino]methyl}pyridin-3-yl)methyl dihydrogen phosphate, Cysteine desulfurase SufS, DI(HYDROXYETHYL)ETHER
Authors:Nakamura, R, Takahashi, Y, Fujishiro, T.
Deposit date:2020-06-24
Release date:2021-06-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Cycloserine enantiomers inhibit PLP-dependent cysteine desulfurase SufS via distinct mechanisms.
Febs J., 2022
6ZK0
DownloadVisualize
BU of 6zk0 by Molmil
1.47A human IMPase with ebselen
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, Inositol monophosphatase 1, ...
Authors:Bax, B.D, Fenn, G.D.
Deposit date:2020-06-29
Release date:2020-09-23
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Crystallization and structure of ebselen bound to Cys141 of human inositol monophosphatase.
Acta Crystallogr.,Sect.F, 76, 2020
8DAF
DownloadVisualize
BU of 8daf by Molmil
Human SF-1 LBD bound to synthetic agonist 6N-10CA and bacterial phospholipid
Descriptor: 10-[(3aR,6S,6aR)-3-phenyl-3a-(1-phenylethenyl)-6-(sulfamoylamino)-1,3a,4,5,6,6a-hexahydropentalen-2-yl]decanoic acid (non-preferred name), DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE, Nuclear receptor coactivator 2, ...
Authors:D'Agostino, E.H, Cato, M.L, Ortlund, E.A.
Deposit date:2022-06-13
Release date:2023-06-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Comparison of activity, structure, and dynamics of SF-1 and LRH-1 complexed with small molecule modulators.
J.Biol.Chem., 299, 2023
9E0Q
DownloadVisualize
BU of 9e0q by Molmil
CryoEM structure of inducible Lysine decarboxylase from Hafnia alvei D-hydrazino-Lysine analog at 2.3 Angstrom resolution
Descriptor: (2R)-6-amino-2-[(2E)-2-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)hydrazin-1-yl]hexanoic acid, Lysine decarboxylase, inducible
Authors:Duhoo, Y, Desfosses, A, Gutsche, I, Doukov, T.I, Berkowitz, D.B.
Deposit date:2024-10-18
Release date:2025-07-30
Method:ELECTRON MICROSCOPY (2.3 Å)
Cite:alpha-Hydrazino Acids Inhibit Pyridoxal Phosphate-Dependent Decarboxylases via "Catalytically Correct" Ketoenamine Tautomers: A Special Motif for Chemical Biology and Drug Discovery?
Acs Catalysis, 15, 2025
7A5U
DownloadVisualize
BU of 7a5u by Molmil
Structure of E37A BlaC from Mycobacterium tuberculosis
Descriptor: Beta-lactamase
Authors:Chikunova, A, Ahmad, M.U, Perrakis, A, Ubbink, M.
Deposit date:2020-08-21
Release date:2021-04-14
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Conserved residues Glu37 and Trp229 play an essential role in protein folding of beta-lactamase.
Febs J., 288, 2021
9DJ8
DownloadVisualize
BU of 9dj8 by Molmil
RNA-nsp9 bound to the NiRAN domain of the E-RTC with an empty G-pocket
Descriptor: ADENOSINE MONOPHOSPHATE, Non-structural protein 9, RNA-directed RNA polymerase, ...
Authors:Small, G.I, Darst, S.A, Campbell, E.A.
Deposit date:2024-09-06
Release date:2025-03-19
Last modified:2025-10-01
Method:ELECTRON MICROSCOPY (2.58 Å)
Cite:The mechanism for GTP-mediated RNA capping by the SARS-CoV-2 NiRAN domain remains unresolved.
Cell, 188, 2025
9DIN
DownloadVisualize
BU of 9din by Molmil
Structure of ClpC1 N-terminal Domain complexed with semi-synthetic Rufomycin analog
Descriptor: ACETIC ACID, ATP-dependent Clp protease ATP-binding subunit ClpC1, CHLORIDE ION, ...
Authors:Abad-Zapatero, C, Wolf, N.M.
Deposit date:2024-09-05
Release date:2025-04-16
Last modified:2025-05-07
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Structure-Based Analysis of Semisynthetic Anti-TB Rufomycin Analogues.
J.Nat.Prod., 88, 2025

242842

数据于2025-10-08公开中

PDB statisticsPDBj update infoContact PDBjnumon