PDB: 238582 resultsInfo pagesStatus searchChemie searchBIRD

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2DSZ	Three dimensional structure of a goat signalling protein secreted during involution Descriptor: Chitinase-3-like protein 1, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose Authors: Kumar, J, Ethayathulla, A.S, Singh, N, Ujwal, R, Srivastava, D.B, Sharma, S, Singh, T.P. Deposit date: 2006-07-09 Release date: 2006-08-01 Last modified: 2024-11-13 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Carbohydrate-binding properties of goat secretory glycoprotein (SPG-40) and its functional implications: structures of the native glycoprotein and its four complexes with chitin-like oligosaccharides ACTA CRYSTALLOGR.,SECT.D, 63, 2007
2DT3	Crystal structure of the complex formed between goat signalling protein and the hexasaccharide at 2.28 A resolution Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitinase-3-like protein 1, alpha-D-mannopyranose-(1-4)-alpha-D-mannopyranose-(1-4)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose Authors: Kumar, J, Ethayathulla, A.S, Srivastava, D.B, Singh, N, Sharma, S, Singh, T.P. Deposit date: 2006-07-09 Release date: 2006-08-01 Last modified: 2024-11-20 Method: X-RAY DIFFRACTION (2.28 Å) Cite: Carbohydrate-binding properties of goat secretory glycoprotein (SPG-40) and its functional implications: structures of the native glycoprotein and its four complexes with chitin-like oligosaccharides ACTA CRYSTALLOGR.,SECT.D, 63, 2007
2DT0	Crystal structure of the complex of goat signalling protein with the trimer of N-acetylglucosamine at 2.45A resolution Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitinase-3-like protein 1, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose Authors: Kumar, J, Ethayathulla, A.S, Srivastava, D.B, Singh, N, Sharma, S, Bhushan, A, Srinivasan, A, Singh, T.P. Deposit date: 2006-07-09 Release date: 2006-07-25 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Carbohydrate-binding properties of goat secretory glycoprotein (SPG-40) and its functional implications: structures of the native glycoprotein and its four complexes with chitin-like oligosaccharides ACTA CRYSTALLOGR.,SECT.D, 63, 2007
2DT1	Crystal Structure Of The Complex Of Goat Signalling Protein With Tetrasaccharide At 2.09 A Resolution Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitinase-3-like protein 1, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose Authors: Kumar, J, Ethayathulla, A.S, Srivastava, D.B, Singh, N, Sharma, S, Bhushan, A, Kaur, P, Singh, T.P. Deposit date: 2006-07-09 Release date: 2006-08-01 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (2.09 Å) Cite: Carbohydrate-binding properties of goat secretory glycoprotein (SPG-40) and its functional implications: structures of the native glycoprotein and its four complexes with chitin-like oligosaccharides ACTA CRYSTALLOGR.,SECT.D, 63, 2007
4V15	Crystal structure of D-threonine aldolase from Alcaligenes xylosoxidans Descriptor: D-THREONINE ALDOLASE, MANGANESE (II) ION, PYRIDOXAL-5'-PHOSPHATE, ... Authors: Uhl, M.K, Oberdorfer, G, Steinkellner, G, Riegler, L, Schuermann, M, Gruber, K. Deposit date: 2014-09-24 Release date: 2015-03-25 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.5 Å) Cite: The Crystal Structure of D-Threonine Aldolase from Alcaligenes Xylosoxidans Provides Insight Into a Metal Ion Assisted Plp-Dependent Mechanism. Plos One, 10, 2015
4CUJ	Structure of Salmonella D-Lactate Dehydrogenase Descriptor: D-LACTATE DEHYDROGENASE Authors: Attarataya, J, Zaccai, N.R, Shoemark, D.K, Brady, R.L. Deposit date: 2014-03-19 Release date: 2015-05-27 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.88 Å) Cite: The Structure of Salmonella D-Lactate Dehydrogenase To be Published
8TLP	Computationally designed tunable C2 symmetric tandem repeat homodimer, D_3_633_8x without peptide Descriptor: D_3_633_8x, no peptide, SULFATE ION Authors: Kennedy, M.A, Stoddard, B.L, Hicks, D.R. Deposit date: 2023-07-27 Release date: 2024-12-11 Method: X-RAY DIFFRACTION (2 Å) Cite: Computationally designed tunable C2 symmetric tandem repeat homodimer, D_3_633_8x, no peptide To Be Published
7T6Y	d((CGA)5TGA) parallel-stranded homo-duplex Descriptor: BARIUM ION, DNA (5'-D(*CP*GP*AP*CP*GP*AP*CP*GP*AP*CP*GP*AP*CP*GP*AP*TP*GP*A)-3') Authors: Luteran, E.M, Paukstelis, P.J. Deposit date: 2021-12-14 Release date: 2021-12-22 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.3 Å) Cite: The parallel-stranded d(CGA) duplex is a highly predictable structural motif with two conformationally distinct strands. Acta Crystallogr D Struct Biol, 78, 2022
4XKJ	a Novel D-lactate Dehydrogenase from Sporolactobacillus sp Descriptor: D-lactate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE Authors: Bo, Y, Hui, D, Xiang, L. Deposit date: 2015-01-12 Release date: 2015-08-05 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (3.148 Å) Cite: a Novel D-lactate Dehydrogenase from Sporolactobacillus sp To Be Published
6RUJ	Factor inhibiting HIF-1 alpha in complex with consensus ankyrin repeat domain-(d)3-hydroxy-Leu peptide Descriptor: CONSENSUS ANKYRIN REPEAT DOMAIN-(D)3-hydroxy-Leu, Hypoxia-inducible factor 1-alpha inhibitor, N-OXALYLGLYCINE, ... Authors: Nakashima, Y, McDonough, M.A, Schofield, C.J. Deposit date: 2019-05-28 Release date: 2020-07-08 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.42 Å) Cite: A human protein hydroxylase that accepts D-residues Commun Chem, 2020
5MHA	D-2-hydroxyacid dehydrogenases (D2-HDH) from Haloferax mediterranei in complex with a mixture of 2-ketohexanoic acid and 2-hydroxyhexanoic acid, and NADPH (1.57 A resolution) Descriptor: (2R)-2-hydroxyhexanoic acid, 1,2-ETHANEDIOL, 2-Ketohexanoic acid, ... Authors: Bisson, C, Baker, P.J, Domenech Perez, J, Pramanpol, N, Harding, S.E, Rice, D.W, Ferrer, J. Deposit date: 2016-11-23 Release date: 2018-05-09 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (1.57 Å) Cite: Productive ternary complexes of D-2-hydroxyacid dehydrogenase provide insights into the chiral specificity of its reaction mechanism To Be Published
5MH5	D-2-hydroxyacid dehydrogenases (D2-HDH) from Haloferax mediterranei in complex with 2-keto-hexanoic acid and NADP+ (1.4 A resolution) Descriptor: 2-Ketohexanoic acid, D-2-hydroxyacid dehydrogenase, MAGNESIUM ION, ... Authors: Bisson, C, Baker, P.J, Domenech Perez, J, Pramanpol, N, Harding, S.E, Rice, D.W, Ferrer, J. Deposit date: 2016-11-23 Release date: 2018-05-02 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Productive ternary complexes of D-2-hydroxyacid dehydrogenase provide insights into the chiral specificity of its reaction mechanism To Be Published
7MRV	F100A mutant structure of MIF2 (D-DT) Descriptor: D-dopachrome decarboxylase, SULFATE ION Authors: Murphy, E.L, Manjula, R, Murphy, J.W, Lolis, E. Deposit date: 2021-05-09 Release date: 2021-08-18 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.57 Å) Cite: A structurally preserved allosteric site in the MIF superfamily affects enzymatic activity and CD74 activation in D-dopachrome tautomerase. J.Biol.Chem., 297, 2021
6PHQ	Crystal structure of glucagon analog fully composed of D-amino acids with 4-bromo-D-phenylalanine substitutions at position 6 and 22 in space group I41 at 1.1 A resolution Descriptor: D-glucagon D-BrPhe 6,22 Authors: Mroz, P.A, Gonzalez-Gutierrez, G, DiMarchi, R.D. Deposit date: 2019-06-25 Release date: 2020-07-01 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.32 Å) Cite: High resolution X-ray structure of glucagon and selected stereo-inversed analogs in novel crystallographic packing arrangement. To Be Published
4TM5	X-ray crystal structure of a D-amino acid aminotransferase from Burkholderia thailandensis E264 bound to the co-factor pyridoxal phosphate Descriptor: D-amino acid aminotransferase Authors: Fairman, J.W, Taylor, B.M, Edwards, T.E, Lorimer, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2014-05-31 Release date: 2014-07-02 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.603 Å) Cite: X-ray crystal structure of a D-amino acid aminotransferase from Burkholderia thailandensis E264 bound to the co-factor pyridoxal phosphate To Be Published
7MW7	Crystal structure of P1G mutant of D-dopachrome tautomerase Descriptor: D-dopachrome decarboxylase, SODIUM ION, SULFATE ION Authors: Manjula, R, Murphy, E.L, Murphy, J.W, Lolis, E. Deposit date: 2021-05-15 Release date: 2021-08-18 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.1 Å) Cite: A structurally preserved allosteric site in the MIF superfamily affects enzymatic activity and CD74 activation in D-dopachrome tautomerase. J.Biol.Chem., 297, 2021
1BH1	STRUCTURAL STUDIES OF D-PRO MELITTIN, NMR, 20 STRUCTURES Descriptor: MELITTIN Authors: Barnham, K.J, Hewish, D, Werkmeister, J, Curtain, C, Kirkpatrick, A, Bartone, N, Liu, S.T, Norton, R, Rivett, D. Deposit date: 1998-06-11 Release date: 1999-01-06 Last modified: 2024-10-30 Method: SOLUTION NMR Cite: Structure and activity of D-Pro14 melittin. J.Protein Chem., 21, 2002
7U9U	Crystal structure of human D-amino acid oxidase in complex with inhibitor Descriptor: (3R)-3-(5,6-dioxo-1,4,5,6-tetrahydropyrazin-2-yl)-2,3-dihydro-1,4-benzoxathiine-7-carbonitrile, BENZOIC ACID, D-amino-acid oxidase, ... Authors: Skene, R.J, Bell, J.A. Deposit date: 2022-03-11 Release date: 2022-06-08 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.66 Å) Cite: Discovery of a Novel Class of d-Amino Acid Oxidase Inhibitors Using the Schrodinger Computational Platform. J.Med.Chem., 65, 2022
7U9S	Crystal structure of human D-amino acid oxidase in complex with inhibitor Descriptor: 5-{2-[4-(trifluoromethyl)phenyl]ethyl}-1,4-dihydropyrazine-2,3-dione, D-amino-acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE Authors: Skene, R.J, Bell, J.A. Deposit date: 2022-03-11 Release date: 2022-06-08 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Discovery of a Novel Class of d-Amino Acid Oxidase Inhibitors Using the Schrodinger Computational Platform. J.Med.Chem., 65, 2022
9JB1	Cryo-EM structure of the type I amyloid-beta 42 fibril containing a D-Asp at positions 7 and 23 Descriptor: Amyloid-beta precursor protein Authors: Hsiao, L.C, Lee, C.H, Hsu, M.F, Hsu, S.T. Deposit date: 2024-08-26 Release date: 2025-03-26 Last modified: 2025-04-09 Method: ELECTRON MICROSCOPY (2.5 Å) Cite: Impacts of D-aspartate on the Aggregation Kinetics and Structural Polymorphism of Amyloid beta Peptide 1-42. J.Mol.Biol., 437, 2025
4LUT	alanine racemase [Clostridium difficile 630] complex with cycloserine Descriptor: Alanine racemase, D-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-N,O-CYCLOSERYLAMIDE Authors: Asojo, O.A. Deposit date: 2013-07-25 Release date: 2014-06-04 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (2.26 Å) Cite: Structural and biochemical analyses of alanine racemase from the multidrug-resistant Clostridium difficile strain 630. Acta Crystallogr.,Sect.D, 70, 2014
2W2K	Crystal structure of the apo forms of Rhodotorula graminis D- mandelate dehydrogenase at 1.8A. Descriptor: D-MANDELATE DEHYDROGENASE Authors: Vachieri, S.G, Cole, A.R, Bagneris, C, Baker, D.P, Fewson, C.A, Basak, A.K. Deposit date: 2008-11-02 Release date: 2009-11-17 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Crystal Structure of the Apo and Holo Forms of Rhodotorula Graminis D(-)-Mandelate Dehydrogenase To be Published
1NZQ	D-Phe-Pro-Arg-Type Thrombin Inhibitor Descriptor: (2-{2-[(5-CARBAMIMIDOYL-1-METHYL-1H-PYRROL-3-YLMETHYL)-CARBAMOYL]-PYRROL-1-YL} -1-CYCLOHEXYLMETHYL-2-OXO-ETHYLAMINO)-ACETIC ACID, Decapeptide Hirudin Analogue, Thrombin heavy chain, ... Authors: Lange, U.E, Bauke, D, Hornberger, W, Mack, H, Seitz, W, Hoeffken, H.W. Deposit date: 2003-02-19 Release date: 2003-10-14 Last modified: 2025-03-26 Method: X-RAY DIFFRACTION (2.18 Å) Cite: D-Phe-Pro-Arg type thrombin inhibitors: unexpected selectivity by modification of the P1 moiety Bioorg.Med.Chem.Lett., 13, 2003
9JB2	Cryo-EM structure of the type II amyloid-beta 42 fibril containing a D-Asp at positions 7 and 23 Descriptor: Amyloid-beta precursor protein Authors: Hsiao, L.C, Lee, C.H, Hsu, M.F, Hsu, S.T. Deposit date: 2024-08-26 Release date: 2025-03-26 Last modified: 2025-04-09 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Impacts of D-aspartate on the Aggregation Kinetics and Structural Polymorphism of Amyloid beta Peptide 1-42. J.Mol.Biol., 437, 2025
9JAZ	Cryo-EM structure of the class I amyloid-beta 42 fibril containing a D-Asp at position 23 Descriptor: Amyloid-beta precursor protein Authors: Hsiao, L.C, Lee, C.H, Hsu, M.F, Hsu, S.T. Deposit date: 2024-08-26 Release date: 2025-03-26 Last modified: 2025-04-09 Method: ELECTRON MICROSCOPY (3 Å) Cite: Impacts of D-aspartate on the Aggregation Kinetics and Structural Polymorphism of Amyloid beta Peptide 1-42. J.Mol.Biol., 437, 2025

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