Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7T6Y
DownloadVisualize
BU of 7t6y by Molmil
d((CGA)5TGA) parallel-stranded homo-duplex
Descriptor: BARIUM ION, DNA (5'-D(*CP*GP*AP*CP*GP*AP*CP*GP*AP*CP*GP*AP*CP*GP*AP*TP*GP*A)-3')
Authors:Luteran, E.M, Paukstelis, P.J.
Deposit date:2021-12-14
Release date:2021-12-22
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The parallel-stranded d(CGA) duplex is a highly predictable structural motif with two conformationally distinct strands.
Acta Crystallogr D Struct Biol, 78, 2022
4V15
DownloadVisualize
BU of 4v15 by Molmil
Crystal structure of D-threonine aldolase from Alcaligenes xylosoxidans
Descriptor: D-THREONINE ALDOLASE, MANGANESE (II) ION, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Uhl, M.K, Oberdorfer, G, Steinkellner, G, Riegler, L, Schuermann, M, Gruber, K.
Deposit date:2014-09-24
Release date:2015-03-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The Crystal Structure of D-Threonine Aldolase from Alcaligenes Xylosoxidans Provides Insight Into a Metal Ion Assisted Plp-Dependent Mechanism.
Plos One, 10, 2015
6PHQ
DownloadVisualize
BU of 6phq by Molmil
Crystal structure of glucagon analog fully composed of D-amino acids with 4-bromo-D-phenylalanine substitutions at position 6 and 22 in space group I41 at 1.1 A resolution
Descriptor: D-glucagon D-BrPhe 6,22
Authors:Mroz, P.A, Gonzalez-Gutierrez, G, DiMarchi, R.D.
Deposit date:2019-06-25
Release date:2020-07-01
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:High resolution X-ray structure of glucagon and selected stereo-inversed analogs in novel crystallographic packing arrangement.
To Be Published
5MH6
DownloadVisualize
BU of 5mh6 by Molmil
D-2-hydroxyacid dehydrogenases (D2-HDH) from Haloferax mediterranei in complex with 2-ketohexanoic acid and NAD+ (1.35 A resolution)
Descriptor: 1,2-ETHANEDIOL, 2-Ketohexanoic acid, D-2-hydroxyacid dehydrogenase, ...
Authors:Bisson, C, Baker, P.J, Domenech Perez, J, Pramanpol, N, Harding, S.E, Rice, D.W, Ferrer, J.
Deposit date:2016-11-23
Release date:2018-06-06
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Productive ternary complexes of D-2-hydroxyacid dehydrogenase provide insights into the chiral specificity of its reaction mechanism
To Be Published
7U9S
DownloadVisualize
BU of 7u9s by Molmil
Crystal structure of human D-amino acid oxidase in complex with inhibitor
Descriptor: 5-{2-[4-(trifluoromethyl)phenyl]ethyl}-1,4-dihydropyrazine-2,3-dione, D-amino-acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Skene, R.J, Bell, J.A.
Deposit date:2022-03-11
Release date:2022-06-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Discovery of a Novel Class of d-Amino Acid Oxidase Inhibitors Using the Schrodinger Computational Platform.
J.Med.Chem., 65, 2022
7U9U
DownloadVisualize
BU of 7u9u by Molmil
Crystal structure of human D-amino acid oxidase in complex with inhibitor
Descriptor: (3R)-3-(5,6-dioxo-1,4,5,6-tetrahydropyrazin-2-yl)-2,3-dihydro-1,4-benzoxathiine-7-carbonitrile, BENZOIC ACID, D-amino-acid oxidase, ...
Authors:Skene, R.J, Bell, J.A.
Deposit date:2022-03-11
Release date:2022-06-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Discovery of a Novel Class of d-Amino Acid Oxidase Inhibitors Using the Schrodinger Computational Platform.
J.Med.Chem., 65, 2022
7VHV
DownloadVisualize
BU of 7vhv by Molmil
Crystal structure of S. aureus D-alanine alanyl carrier protein ligase
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, D-alanine--D-alanyl carrier protein ligase, MAGNESIUM ION
Authors:Lee, B.J, Lee, I.-G, Im, H.G, Yoon, H.J.
Deposit date:2021-09-23
Release date:2022-04-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structural and functional analysis of the D-alanyl carrier protein ligase DltA from Staphylococcus aureus Mu50.
Acta Crystallogr D Struct Biol, 78, 2022
5BPF
DownloadVisualize
BU of 5bpf by Molmil
Crystal structure of ADP complexed D-alanine-D-alanine ligase(DDL) from Yersinia pestis
Descriptor: ACETATE ION, ADENOSINE-5'-DIPHOSPHATE, D-alanine-D-alanine ligase, ...
Authors:Tran, H.T, Kang, L.W, Hong, M.K.
Deposit date:2015-05-28
Release date:2016-03-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Structure of D-alanine-D-alanine ligase from Yersinia pestis: nucleotide phosphate recognition by the serine loop.
Acta Crystallogr D Struct Biol, 72, 2016
5BPH
DownloadVisualize
BU of 5bph by Molmil
Crystal structure of AMP complexed D-alanine-D-alanine ligase(DDL) from Yersinia pestis
Descriptor: ACETATE ION, ADENOSINE MONOPHOSPHATE, D-alanine--D-alanine ligase, ...
Authors:Tran, H.T, Kang, L.W, Hong, M.K.
Deposit date:2015-05-28
Release date:2016-03-02
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of D-alanine-D-alanine ligase from Yersinia pestis: nucleotide phosphate recognition by the serine loop.
Acta Crystallogr D Struct Biol, 72, 2016
5MHA
DownloadVisualize
BU of 5mha by Molmil
D-2-hydroxyacid dehydrogenases (D2-HDH) from Haloferax mediterranei in complex with a mixture of 2-ketohexanoic acid and 2-hydroxyhexanoic acid, and NADPH (1.57 A resolution)
Descriptor: (2R)-2-hydroxyhexanoic acid, 1,2-ETHANEDIOL, 2-Ketohexanoic acid, ...
Authors:Bisson, C, Baker, P.J, Domenech Perez, J, Pramanpol, N, Harding, S.E, Rice, D.W, Ferrer, J.
Deposit date:2016-11-23
Release date:2018-05-09
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Productive ternary complexes of D-2-hydroxyacid dehydrogenase provide insights into the chiral specificity of its reaction mechanism
To Be Published
5MH5
DownloadVisualize
BU of 5mh5 by Molmil
D-2-hydroxyacid dehydrogenases (D2-HDH) from Haloferax mediterranei in complex with 2-keto-hexanoic acid and NADP+ (1.4 A resolution)
Descriptor: 2-Ketohexanoic acid, D-2-hydroxyacid dehydrogenase, MAGNESIUM ION, ...
Authors:Bisson, C, Baker, P.J, Domenech Perez, J, Pramanpol, N, Harding, S.E, Rice, D.W, Ferrer, J.
Deposit date:2016-11-23
Release date:2018-05-02
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Productive ternary complexes of D-2-hydroxyacid dehydrogenase provide insights into the chiral specificity of its reaction mechanism
To Be Published
4XKJ
DownloadVisualize
BU of 4xkj by Molmil
a Novel D-lactate Dehydrogenase from Sporolactobacillus sp
Descriptor: D-lactate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Bo, Y, Hui, D, Xiang, L.
Deposit date:2015-01-12
Release date:2015-08-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.148 Å)
Cite:a Novel D-lactate Dehydrogenase from Sporolactobacillus sp
To Be Published
4PNH
DownloadVisualize
BU of 4pnh by Molmil
Crystal structure of D,D-heptose 1,7-bisphosphate phosphatase from Burkholderia Thailandensis
Descriptor: D,D-heptose 1,7-bisphosphate phosphatase
Authors:Kim, M.S, Shin, D.H.
Deposit date:2014-05-23
Release date:2015-06-24
Last modified:2015-07-01
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:Crystal structure of D,D-heptose 1,7-bisphosphate phosphatase from Burkholderia Thailandensis
To Be Published
6RUJ
DownloadVisualize
BU of 6ruj by Molmil
Factor inhibiting HIF-1 alpha in complex with consensus ankyrin repeat domain-(d)3-hydroxy-Leu peptide
Descriptor: CONSENSUS ANKYRIN REPEAT DOMAIN-(D)3-hydroxy-Leu, Hypoxia-inducible factor 1-alpha inhibitor, N-OXALYLGLYCINE, ...
Authors:Nakashima, Y, McDonough, M.A, Schofield, C.J.
Deposit date:2019-05-28
Release date:2020-07-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:A human protein hydroxylase that accepts D-residues
Commun Chem, 2020
5BRE
DownloadVisualize
BU of 5bre by Molmil
Crystal structure of Trypanosoma cruzi glucokinase in complex with inhibitor CBZ-GlcN
Descriptor: 2-{[(benzyloxy)carbonyl]amino}-2-deoxy-beta-D-glucopyranose, Glucokinase 1, putative
Authors:D'Antonio, E.L, Perry, K, Deinema, M.S, Kearns, S.P, Frey, T.A.
Deposit date:2015-05-30
Release date:2015-06-17
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure-based approach to the identification of a novel group of selective glucosamine analogue inhibitors of Trypanosoma cruzi glucokinase.
Mol.Biochem.Parasitol., 204, 2016
5BRD
DownloadVisualize
BU of 5brd by Molmil
Crystal structure of Trypanosoma cruzi glucokinase in complex with inhibitor BENZ-GlcN
Descriptor: 2-(benzoylamino)-2-deoxy-beta-D-glucopyranose, Glucokinase 1, putative
Authors:D'Antonio, E.L, Perry, K, Deinema, M.S, Kearns, S.P, Frey, T.A.
Deposit date:2015-05-30
Release date:2015-06-17
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure-based approach to the identification of a novel group of selective glucosamine analogue inhibitors of Trypanosoma cruzi glucokinase.
Mol.Biochem.Parasitol., 204, 2016
3KER
DownloadVisualize
BU of 3ker by Molmil
D-Dopachrome tautomerase (D-DT)/ macrophage migration inhibitory factor 2 (MIF2) complexed with inhibitor 4-IPP
Descriptor: 4-phenylpyrimidine, CHLORIDE ION, D-dopachrome decarboxylase, ...
Authors:Zierow, S, Lolis, E.
Deposit date:2009-10-26
Release date:2010-10-13
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.78 Å)
Cite:Targeting distinct tautomerase sites of D-DT and MIF with a single molecule for inhibition of neutrophil lung recruitment.
Faseb J., 28, 2014
4RSM
DownloadVisualize
BU of 4rsm by Molmil
Crystal structure of carbohydrate transporter msmeg_3599 from mycobacterium smegmatis str. mc2 155, target efi-510970, in complex with d-threitol
Descriptor: D-Threitol, Periplasmic binding protein/LacI transcriptional regulator
Authors:Patskovsky, Y, Toro, R, Bhosle, R, Al Obaidi, N, Morisco, L.L, Wasserman, S.R, Chamala, S, Attonito, J.D, Scott Glenn, A, Chowdhury, S, Lafleur, J, Hillerich, B, Siedel, R.D, Love, J, Whalen, K.L, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2014-11-08
Release date:2014-12-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A General Strategy for the Discovery of Metabolic Pathways: d-Threitol, l-Threitol, and Erythritol Utilization in Mycobacterium smegmatis.
J.Am.Chem.Soc., 137, 2015
5BRF
DownloadVisualize
BU of 5brf by Molmil
Crystal structure of Trypanosoma cruzi glucokinase in complex with inhibitor HPOP-GlcN
Descriptor: 2-deoxy-2-{[3-(4-hydroxyphenyl)propanoyl]amino}-alpha-D-glucopyranose, Glucokinase 1, putative
Authors:D'Antonio, E.L, Perry, K, Deinema, M.S, Kearns, S.P, Frey, T.A.
Deposit date:2015-05-30
Release date:2015-06-17
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.102 Å)
Cite:Structure-based approach to the identification of a novel group of selective glucosamine analogue inhibitors of Trypanosoma cruzi glucokinase.
Mol.Biochem.Parasitol., 204, 2016
3K85
DownloadVisualize
BU of 3k85 by Molmil
Crystal structure of a D-glycero-D-manno-heptose 1-phosphate kinase from Bacteriodes thetaiotaomicron
Descriptor: D-glycero-D-manno-heptose 1-phosphate kinase
Authors:Palani, K, Kumaran, D, Burley, S.K, Swaminathan, S, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2009-10-13
Release date:2009-12-08
Last modified:2021-02-10
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Crystal structure of a D-glycero-D-manno-heptose 1-phosphate kinase from Bacteriodes thetaiotaomicron
To be Published
3KAN
DownloadVisualize
BU of 3kan by Molmil
D-dopachrome tautomerase (D-DT)/macrophage migration inhibitory factor 2 (MIF2) complexed with inhibitor 4-IPP
Descriptor: 4-phenylpyrimidine, CHLORIDE ION, D-dopachrome tautomerase
Authors:Zierow, S, Lolis, E.
Deposit date:2009-10-19
Release date:2011-04-20
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.13 Å)
Cite:Targeting distinct tautomerase sites of D-DT and MIF with a single molecule for inhibition of neutrophil lung recruitment.
Faseb J., 28, 2014
3KOB
DownloadVisualize
BU of 3kob by Molmil
DTD from Plasmodium falciparum in complex with D-Glutamic acid
Descriptor: D-GLUTAMIC ACID, D-tyrosyl-tRNA(Tyr) deacylase
Authors:Manickam, Y, Bhatt, T.K, Sharma, A.
Deposit date:2009-11-13
Release date:2009-12-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:Ligand-bound Structures Provide Atomic Snapshots for the Catalytic Mechanism of D-Amino Acid Deacylase
J.Biol.Chem., 285, 2010
3KOC
DownloadVisualize
BU of 3koc by Molmil
DTD from Plasmodium falciparum in complex with D-Histidine
Descriptor: D-HISTIDINE, D-tyrosyl-tRNA(Tyr) deacylase
Authors:Manickam, Y, Bhatt, T.K, Sharma, A.
Deposit date:2009-11-13
Release date:2009-12-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:Ligand-bound Structures Provide Atomic Snapshots for the Catalytic Mechanism of D-Amino Acid Deacylase
J.Biol.Chem., 285, 2010
3KO7
DownloadVisualize
BU of 3ko7 by Molmil
DTD from Plasmodium falciparum in complex with D-Lysine
Descriptor: D-LYSINE, D-tyrosyl-tRNA(Tyr) deacylase
Authors:Manickam, Y, Bhatt, T.K, Sharma, A.
Deposit date:2009-11-13
Release date:2009-12-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Ligand-bound Structures Provide Atomic Snapshots for the Catalytic Mechanism of D-Amino Acid Deacylase
J.Biol.Chem., 285, 2010
3KOD
DownloadVisualize
BU of 3kod by Molmil
DTD from Plasmodium falciparum in complex with D-Serine
Descriptor: D-SERINE, D-tyrosyl-tRNA(Tyr) deacylase
Authors:Manickam, Y, Bhatt, T.K, Sharma, A.
Deposit date:2009-11-13
Release date:2009-12-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Ligand-bound Structures Provide Atomic Snapshots for the Catalytic Mechanism of D-Amino Acid Deacylase
J.Biol.Chem., 285, 2010

225399

数据于2024-09-25公开中

PDB statisticsPDBj update infoContact PDBjnumon