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4GIV
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BU of 4giv by Molmil
Crystal structure of a SMT fusion Peptidyl-prolyl cis-trans isomerase with surface mutation D44G from Burkholderia pseudomallei complexed with CJ183
Descriptor: 3-(pyridin-3-yl)propyl (2S)-1-[(3-nitrophenyl)sulfonyl]piperidine-2-carboxylate, FORMIC ACID, Ubiquitin-like protein SMT3, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2012-08-09
Release date:2012-09-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:A structural biology approach enables the development of antimicrobials targeting bacterial immunophilins.
Antimicrob.Agents Chemother., 58, 2014
4HCN
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BU of 4hcn by Molmil
Crystal structure of Burkholderia pseudomallei effector protein CHBP in complex with ubiquitin
Descriptor: DI(HYDROXYETHYL)ETHER, FORMIC ACID, PHOSPHATE ION, ...
Authors:Yao, Q, Cui, J, Zhu, Y, Shao, F.
Deposit date:2012-09-30
Release date:2012-11-21
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural mechanism of ubiquitin and NEDD8 deamidation catalyzed by bacterial effectors that induce macrophage-specific apoptosis.
Proc.Natl.Acad.Sci.USA, 109, 2012
4HCP
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BU of 4hcp by Molmil
crystal structure of Burkholderia pseudomallei effector protein chbp in complex with nedd8
Descriptor: GLYCEROL, NEDD8, Putative ATP/GTP binding protein, ...
Authors:Yao, Q, Shao, F.
Deposit date:2012-10-01
Release date:2012-11-21
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:Structural mechanism of ubiquitin and NEDD8 deamidation catalyzed by bacterial effectors that induce macrophage-specific apoptosis.
Proc.Natl.Acad.Sci.USA, 109, 2012
4HXD
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BU of 4hxd by Molmil
Diversity of ubiquitin and ISG15 specificity amongst nairoviruses viral ovarian tumor domain proteases
Descriptor: 1.7.6 3-bromanylpropan-1-amine, Polyubiquitin-C, RNA-directed RNA polymerase L, ...
Authors:Capodagli, G.C, Pegan, S.D.
Deposit date:2012-11-09
Release date:2013-02-13
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Diversity of Ubiquitin and ISG15 Specificity among Nairoviruses' Viral Ovarian Tumor Domain Proteases.
J.Virol., 87, 2013
4I6L
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BU of 4i6l by Molmil
Crystal structure of OTUB1 in complex with ubiquitin variant
Descriptor: Ubiquitin, Ubiquitin thioesterase OTUB1
Authors:Juang, Y.C, Sicheri, F.
Deposit date:2012-11-29
Release date:2013-01-16
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.488 Å)
Cite:A strategy for modulation of enzymes in the ubiquitin system.
Science, 339, 2013
4II3
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BU of 4ii3 by Molmil
Crystal structure of S. pombe Ubiquitin activating enzyme 1 (Uba1) in complex with ubiquitin and ATP/Mg
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, MAGNESIUM ION, ...
Authors:Olsen, S.K, Lima, C.D.
Deposit date:2012-12-19
Release date:2013-02-13
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure of a ubiquitin E1-E2 complex: insights to E1-E2 thioester transfer.
Mol.Cell, 49, 2013
1UEL
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BU of 1uel by Molmil
Solution structure of ubiquitin-like domain of hHR23B complexed with ubiquitin-interacting motif of proteasome subunit S5a
Descriptor: 26S proteasome non-ATPase regulatory subunit 4, UV excision repair protein RAD23 homolog B
Authors:Fujiwara, K, Tenno, T, Jee, J.G, Sugasawa, K, Ohki, I, Kojima, C, Tochio, H, Hiroaki, H, Hanaoka, H, Shirakawa, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-05-19
Release date:2004-02-10
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Structure of the Ubiquitin-interacting Motif of S5a Bound to the Ubiquitin-like Domain of HR23B
J.Biol.Chem., 279, 2004
7CJB
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BU of 7cjb by Molmil
VHL recognizes hydroxyproline in RIPK1
Descriptor: Elongin-B, Elongin-C, GLYCEROL, ...
Authors:Liu, J, Wang, Y, Pan, L.
Deposit date:2020-07-09
Release date:2021-07-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:VHL recognizes hydroxyproline in RIPK1
To Be Published
1R4M
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BU of 1r4m by Molmil
APPBP1-UBA3-NEDD8, an E1-ubiquitin-like protein complex
Descriptor: Ubiquitin-like protein NEDD8, ZINC ION, amyloid beta precursor protein-binding protein 1, ...
Authors:Walden, H, Podgorski, M.S, Holton, J.M, Schulman, B.A.
Deposit date:2003-10-07
Release date:2003-12-23
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3 Å)
Cite:The structure of the APPBP1-UBA3-NEDD8-ATP complex reveals the basis for selective ubiquitin-like protein activation by an E1.
Mol.Cell, 12, 2003
1S1Q
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BU of 1s1q by Molmil
TSG101(UEV) domain in complex with Ubiquitin
Descriptor: ACETIC ACID, COPPER (II) ION, SULFATE ION, ...
Authors:Sundquist, W.I, Schubert, H.L, Kelly, B.N, Hill, G.C, Holton, J.M, Hill, C.P.
Deposit date:2004-01-07
Release date:2004-05-04
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Ubiquitin recognition by the human TSG101 protein
Mol.Cell, 13, 2004
3M62
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BU of 3m62 by Molmil
Crystal structure of Ufd2 in complex with the ubiquitin-like (UBL) domain of Rad23
Descriptor: PENTAETHYLENE GLYCOL, POTASSIUM ION, UV excision repair protein RAD23, ...
Authors:Haenzelmann, P, Schindelin, H.
Deposit date:2010-03-15
Release date:2010-04-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The yeast E4 ubiquitin ligase Ufd2 interacts with the ubiquitin-like domains of Rad23 and Dsk2 via a novel and distinct ubiquitin-like binding domain.
J.Biol.Chem., 285, 2010
3MHS
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BU of 3mhs by Molmil
Structure of the SAGA Ubp8/Sgf11/Sus1/Sgf73 DUB module bound to ubiquitin aldehyde
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Protein SUS1, ...
Authors:Samara, N.L, Datta, A.B, Berndsen, C.E, Zhang, X, Yao, T, Cohen, R.E, Wolberger, C.
Deposit date:2010-04-08
Release date:2010-04-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structural insights into the assembly and function of the SAGA deubiquitinating module.
Science, 328, 2010
1UZX
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BU of 1uzx by Molmil
A complex of the Vps23 UEV with ubiquitin
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, SULFATE ION, UBIQUITIN, ...
Authors:Teo, H, Williams, R.L.
Deposit date:2004-03-18
Release date:2004-03-30
Last modified:2017-07-05
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural Insights Into Endosomal Sorting Complex Required for Transport (Escrt-I) Recognition of Ubiquitinated Proteins
J.Biol.Chem., 279, 2004
7F0U
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BU of 7f0u by Molmil
porcine epidemic diarrhea virus papain-like protease 2 C44S mutant in complex with mono ubiquitin
Descriptor: Ubiquitin, ZINC ION, papain-like protease 2
Authors:Chu, H.F, Lin, T.H.
Deposit date:2021-06-07
Release date:2021-10-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and Biochemical Characterization of Porcine Epidemic Diarrhea Virus Papain-Like Protease 2.
J.Virol., 96, 2022
1VCB
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BU of 1vcb by Molmil
THE VHL-ELONGINC-ELONGINB STRUCTURE
Descriptor: PROTEIN (ELONGIN B), PROTEIN (ELONGIN C), PROTEIN (VHL)
Authors:Stebbins, C.E, Kaelin, W.G, Pavletich, N.P.
Deposit date:1999-03-13
Release date:1999-04-21
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of the VHL-ElonginC-ElonginB complex: implications for VHL tumor suppressor function.
Science, 284, 1999
3NHE
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BU of 3nhe by Molmil
High Resolution Structure (1.26A) of USP2a in Complex with Ubiquitin
Descriptor: Ubiquitin, Ubiquitin carboxyl-terminal hydrolase 2, ZINC ION
Authors:Schormann, N, DeLucas, L.J, Powell McCombs, D.
Deposit date:2010-06-14
Release date:2010-06-30
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:High resolution structure of USP2a in complex with ubiquitin
To be Published
3O65
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BU of 3o65 by Molmil
Crystal structure of a Josephin-ubiquitin complex: Evolutionary restraints on ataxin-3 deubiquitinating activity
Descriptor: Putative ataxin-3-like protein, SODIUM ION, Ubiquitin
Authors:Weeks, S.D, Grasty, K.C, Hernandez-Cuebas, L, Loll, P.J.
Deposit date:2010-07-28
Release date:2010-11-24
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structure of a Josephin-Ubiquitin Complex: EVOLUTIONARY RESTRAINTS ON ATAXIN-3 DEUBIQUITINATING ACTIVITY.
J.Biol.Chem., 286, 2011
3OFI
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BU of 3ofi by Molmil
Crystal structure of human insulin-degrading enzyme in complex with ubiquitin
Descriptor: 1,4-DIETHYLENE DIOXIDE, Insulin-degrading enzyme, Ubiquitin, ...
Authors:Kalas, V, Ralat, L.A, Tang, W.-J.
Deposit date:2010-08-15
Release date:2010-09-08
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Ubiquitin is a novel substrate for human insulin-degrading enzyme.
J.Mol.Biol., 406, 2011
7DNI
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BU of 7dni by Molmil
MDA5 CARDs-MAVS CARD polyUb complex
Descriptor: Interferon-induced helicase C domain-containing protein 1, Mitochondrial antiviral-signaling protein, Ubiquitin
Authors:Song, B, Chen, Y, Luo, D.H, Zheng, J.
Deposit date:2020-12-09
Release date:2021-10-13
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Ordered assembly of the cytosolic RNA-sensing MDA5-MAVS signaling complex via binding to unanchored K63-linked poly-ubiquitin chains.
Immunity, 54, 2021
3M63
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BU of 3m63 by Molmil
Crystal structure of Ufd2 in complex with the ubiquitin-like (UBL) domain of Dsk2
Descriptor: PENTAETHYLENE GLYCOL, POTASSIUM ION, Ubiquitin conjugation factor E4, ...
Authors:Haenzelmann, P, Schindelin, H.
Deposit date:2010-03-15
Release date:2010-04-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The yeast E4 ubiquitin ligase Ufd2 interacts with the ubiquitin-like domains of Rad23 and Dsk2 via a novel and distinct ubiquitin-like binding domain.
J.Biol.Chem., 285, 2010
7DNJ
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BU of 7dnj by Molmil
K63-polyUb MDA5CARDs complex
Descriptor: Interferon-induced helicase C domain-containing protein 1, Ubiquitin
Authors:Song, B, Chen, Y, Luo, D.H, Zheng, J.
Deposit date:2020-12-09
Release date:2021-10-13
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Ordered assembly of the cytosolic RNA-sensing MDA5-MAVS signaling complex via binding to unanchored K63-linked poly-ubiquitin chains.
Immunity, 54, 2021
7F7X
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BU of 7f7x by Molmil
Protein complex between phosphorylated ubiquitin and Ubqln2 UBA
Descriptor: Polyubiquitin-B, Ubiquilin-2
Authors:Qin, L.Y, Dong, X, Tang, C.
Deposit date:2021-06-30
Release date:2022-05-18
Method:SOLUTION NMR
Cite:Kinetic Constraints in the Specific Interaction between Phosphorylated Ubiquitin and Proteasomal Shuttle Factors.
Biomolecules, 11, 2021
3OLM
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BU of 3olm by Molmil
Structure and Function of a Ubiquitin Binding Site within the Catalytic Domain of a HECT Ubiquitin Ligase
Descriptor: E3 ubiquitin-protein ligase RSP5, Ubiquitin
Authors:Kim, H.C, Steffen, A, Chen, J, Huibregtse, J.M.
Deposit date:2010-08-26
Release date:2011-03-23
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.495 Å)
Cite:Structure and function of a HECT domain ubiquitin-binding site.
Embo Rep., 12, 2011
3MTN
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BU of 3mtn by Molmil
Usp21 in complex with a ubiquitin-based, USP21-specific inhibitor
Descriptor: CHLORIDE ION, GLYCEROL, UBIQUITIN VARIANT UBV.21.4, ...
Authors:Walker, J.R, Avvakumov, G.V, Xue, S, Li, Y, Ernst, A, Sidhu, S, Weigelt, J, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2010-04-30
Release date:2010-06-09
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:A strategy for modulation of enzymes in the ubiquitin system.
Science, 339, 2013
3N3K
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BU of 3n3k by Molmil
The catalytic domain of USP8 in complex with a USP8 specific inhibitor
Descriptor: Ubiquitin, Ubiquitin carboxyl-terminal hydrolase 8, ZINC ION
Authors:Walker, J.R, Avvakumov, G.V, Xue, S, Li, Y, Allali-Hassani, A, Lam, R, Ernst, A, Sidhu, S, Weigelt, J, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium, Structural Genomics Consortium (SGC)
Deposit date:2010-05-20
Release date:2010-06-23
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A strategy for modulation of enzymes in the ubiquitin system.
Science, 339, 2013

221051

数据于2024-06-12公开中

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