Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

7M9X
DownloadVisualize
BU of 7m9x by Molmil
HIV-1 Protease (I84V) in Complex with NR02-79
Descriptor: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(2S,3R)-4-{(2-ethylbutyl)[(1S)-1-hydroxy-2,3-dihydro-1H-indene-5-sulfonyl]amino}-3-hydroxy-1-phenylbutan-2-yl]carbamate, Protease, SULFATE ION
Authors:Lockbaum, G.J, Schiffer, C.A.
Deposit date:2021-03-31
Release date:2022-08-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.831 Å)
Cite:HIV-1 Protease (I84V) in Complex with NR02-79
To Be Published
5IDM
DownloadVisualize
BU of 5idm by Molmil
Bifunctional histidine kinase CckA (domain, CA) in complex with c-di-GMP and AMPPNP/Mg2+
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Cell cycle histidine kinase CckA, MAGNESIUM ION, ...
Authors:Dubey, B.N, Schirmer, T.
Deposit date:2016-02-24
Release date:2016-10-05
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Cyclic di-GMP mediates a histidine kinase/phosphatase switch by noncovalent domain cross-linking.
Sci Adv, 2, 2016
5VYD
DownloadVisualize
BU of 5vyd by Molmil
Crystal structure of phosphodiesterase domain of RhoPDE fusion protein from the Choanoflagellate Salpingoeca rosetta
Descriptor: MAGNESIUM ION, Phosphodiesterase, ZINC ION
Authors:Prem Kumar, R, Lamarche, L.B, Oprian, D.D.
Deposit date:2017-05-25
Release date:2017-10-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Purification and Characterization of RhoPDE, a Retinylidene/Phosphodiesterase Fusion Protein and Potential Optogenetic Tool from the Choanoflagellate Salpingoeca rosetta.
Biochemistry, 56, 2017
8W2Z
DownloadVisualize
BU of 8w2z by Molmil
Cas9d 6bp R-loop Seed Complex
Descriptor: DNA Non-Target Strand, DNA Target Strand, HNH nuclease domain-containing protein, ...
Authors:Fregoso Ocampo, R, Bravo, J.P.K, Taylor, D.W.
Deposit date:2024-02-21
Release date:2025-01-15
Last modified:2025-05-28
Method:ELECTRON MICROSCOPY (3.37 Å)
Cite:DNA targeting by compact Cas9d and its resurrected ancestor.
Nat Commun, 16, 2025
6VTC
DownloadVisualize
BU of 6vtc by Molmil
p53-specific T cell receptor
Descriptor: T-cell Receptor 1a2, p53-specific T cell receptor, B-chain
Authors:Wu, D, Gallagher, D.T, Gowthaman, R, Pierce, B.G, Mariuzza, R.A.
Deposit date:2020-02-12
Release date:2020-06-17
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Structural basis for oligoclonal T cell recognition of a shared p53 cancer neoantigen.
Nat Commun, 11, 2020
5IGI
DownloadVisualize
BU of 5igi by Molmil
Macrolide 2'-phosphotransferase type I - complex with guanosine and azithromycin
Descriptor: AZITHROMYCIN, GUANOSINE, ISOPROPYL ALCOHOL, ...
Authors:Berghuis, A.M, Fong, D.H.
Deposit date:2016-02-28
Release date:2017-04-26
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural Basis for Kinase-Mediated Macrolide Antibiotic Resistance.
Structure, 25, 2017
8VVE
DownloadVisualize
BU of 8vve by Molmil
Kappa opioid receptor:Galphai protein in complex with inverse agonist norBNI
Descriptor: (4bS,8R,8aS,10aS,11R,14aS,19aR,20bR)-7,12-bis(cyclopropylmethyl)-5,6,7,8,9,10,11,12,13,14,20,20b-dodecahydro-19aH-4,8:11,15-dimethanobis[1]benzofuro[2,3-a:3',2'-i]dipyrido[4,3-b:3',4'-h]carbazole-1,8a,10a,18-tetrol, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Gati, C, Motiwala, Z, Tyson, A.S, Styrpejko, D, Han, G.W, Khan, S, Ramos-Gonzalez, N, Shenvi, R, Majumdar, S.
Deposit date:2024-01-31
Release date:2025-01-15
Last modified:2025-07-09
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Molecular mechanisms of inverse agonism via kappa-opioid receptor-G protein complexes.
Nat.Chem.Biol., 21, 2025
5VYJ
DownloadVisualize
BU of 5vyj by Molmil
Crystal structure of the photosynthetic phosphoenolpyruvate carboxylase isoenzyme from maize in complex with Gly
Descriptor: ACETATE ION, GLYCINE, Phosphoenolpyruvate carboxylase
Authors:Gonzalez-Segura, L, Guemez-Toro, R, Munoz-Clares, R.A.
Deposit date:2017-05-25
Release date:2017-06-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Identification of the allosteric site for neutral amino acids in the maize C4isozyme of phosphoenolpyruvate carboxylase: The critical role of Ser-100.
J. Biol. Chem., 293, 2018
7M9V
DownloadVisualize
BU of 7m9v by Molmil
HIV-1 Protease (I84V) in Complex with NR01-141
Descriptor: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(2S,3R)-3-hydroxy-4-{[(1S)-1-hydroxy-2,3-dihydro-1H-indene-5-sulfonyl](2-methylpropyl)amino}-1-phenylbutan-2-yl]carbamate, Protease, SULFATE ION
Authors:Lockbaum, G.J, Schiffer, C.A.
Deposit date:2021-03-31
Release date:2022-08-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.891 Å)
Cite:HIV-1 Protease (I84V) in Complex with NR01-141
To Be Published
8VEZ
DownloadVisualize
BU of 8vez by Molmil
De novo design apixaban-binding protein: apx1049
Descriptor: 1-(4-METHOXYPHENYL)-7-OXO-6-[4-(2-OXOPIPERIDIN-1-YL)PHENYL]-4,5,6,7-TETRAHYDRO-1H-PYRAZOLO[3,4-C]PYRIDINE-3-CARBOXAMIDE, De novo design apixaban-binding protein: apx1049
Authors:Bera, A.K, Lee, G.R, Baker, D.
Deposit date:2023-12-20
Release date:2025-01-15
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Small-molecule binding and sensing with a designed protein family
To Be Published
5IGT
DownloadVisualize
BU of 5igt by Molmil
Macrolide 2'-phosphotransferase type I - complex with guanosine and erythromycin
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ERYTHROMYCIN A, GUANOSINE, ...
Authors:Berghuis, A.M, Fong, D.H.
Deposit date:2016-02-28
Release date:2017-04-26
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Structural Basis for Kinase-Mediated Macrolide Antibiotic Resistance.
Structure, 25, 2017
8VLW
DownloadVisualize
BU of 8vlw by Molmil
TolQ-TolR inner membrane protein complex from Acinetobacter baumannii
Descriptor: Tol-Pal system protein TolQ, Tol-Pal system protein TolR
Authors:Guo, Y, Borek, D, Center for Structural Biology of Infectious Diseases (CSBID)
Deposit date:2024-01-12
Release date:2025-01-15
Last modified:2025-01-22
Method:ELECTRON MICROSCOPY (3.34 Å)
Cite:Structural architecture of TolQ-TolR inner membrane protein complex from opportunistic pathogen Acinetobacter baumannii.
Biorxiv, 2024
7M9W
DownloadVisualize
BU of 7m9w by Molmil
HIV-1 Protease (I84V) in Complex with NR02-73
Descriptor: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(2S,3R)-3-hydroxy-4-{[(1S)-1-hydroxy-2,3-dihydro-1H-indene-5-sulfonyl][(2S)-2-methylbutyl]amino}-1-phenylbutan-2-yl]carbamate, Protease, SULFATE ION
Authors:Lockbaum, G.J, Schiffer, C.A.
Deposit date:2021-03-31
Release date:2022-08-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:HIV-1 Protease (I84V) in Complex with NR02-73
To Be Published
8VO8
DownloadVisualize
BU of 8vo8 by Molmil
Cryo-EM structure of fascin crosslinked F-actin (Eigen_left)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Gong, R, Reynolds, M.J, Alushin, G.M.
Deposit date:2024-01-14
Release date:2025-01-15
Last modified:2025-05-28
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Fascin structural plasticity mediates flexible actin bundle construction.
Nat.Struct.Mol.Biol., 32, 2025
8W3C
DownloadVisualize
BU of 8w3c by Molmil
Crystal Structure of Enterovirus 68 3C Protease with AG7088 at 1.97 Angstroms
Descriptor: 4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER, Peptidase C3
Authors:Azzolino, V.N, Shaqra, A.M, Schiffer, C.A.
Deposit date:2024-02-22
Release date:2025-01-15
Last modified:2025-02-05
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structural Analysis of Inhibitor Binding to Enterovirus-D68 3C Protease.
Viruses, 17, 2025
7M4B
DownloadVisualize
BU of 7m4b by Molmil
DNA Polymerase Lambda, TTP:At Mn2+ Product State Ternary Complex, 60 min
Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*CP*AP*GP*TP*AP*CP*T)-3'), DNA (5'-D(*CP*GP*GP*CP*AP*GP*TP*AP*CP*TP*G)-3'), ...
Authors:Jamsen, J.A, Wilson, S.H.
Deposit date:2021-03-21
Release date:2022-07-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Watching right and wrong nucleotide insertion captures hidden polymerase fidelity checkpoints.
Nat Commun, 13, 2022
5VH1
DownloadVisualize
BU of 5vh1 by Molmil
Crystal Structure of Chicken Gamma S Crystallin
Descriptor: Gamma S-crystallin
Authors:Sagar, V, Wistow, G.
Deposit date:2017-04-12
Release date:2017-05-24
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of Chicken gamma S-Crystallin Reveals Lattice Contacts with Implications for Function in the Lens and the Evolution of the beta gamma-Crystallins.
Structure, 25, 2017
7M9T
DownloadVisualize
BU of 7m9t by Molmil
HIV-1 Protease WT (NL4-3) in Complex with NR02-73
Descriptor: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(2S,3R)-3-hydroxy-4-{[(1S)-1-hydroxy-2,3-dihydro-1H-indene-5-sulfonyl][(2S)-2-methylbutyl]amino}-1-phenylbutan-2-yl]carbamate, Protease, SULFATE ION
Authors:Lockbaum, G.J, Schiffer, C.A.
Deposit date:2021-03-31
Release date:2022-08-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:HIV-1 Protease WT (NL4-3) in Complex with NR02-73
To Be Published
8VOE
DownloadVisualize
BU of 8voe by Molmil
The DNA 16-mer sequence 5'-GCTGGATTAATCCAGC-3' bound by a DB1992 stacked dimer
Descriptor: (2M)-2-[(5P)-5-(5-carbamimidoylthiophen-2-yl)furan-2-yl]-1H-benzimidazole-6-carboximidamide, CALCIUM ION, DNA (5'-D(*GP*CP*TP*GP*GP*AP*TP*TP*AP*AP*TP*CP*CP*AP*GP*C)-3')
Authors:Terrell, J.R, Wilson, W.D.
Deposit date:2024-01-15
Release date:2025-01-22
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structural Examination of DNA Minor Groove Binding by Diamidine Stacked Dimers
To Be Published
6VUZ
DownloadVisualize
BU of 6vuz by Molmil
Crystal structure of Eis from Mycobacterium tuberculosis in complex with inhibitor SGT353
Descriptor: 2-{[3-(piperidin-1-yl)propyl]sulfanyl}-6,7-dihydro-5H-cyclopenta[4,5]thieno[2,3-d]pyrimidin-4-amine, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Punetha, A, Hou, C, Ngo, H.X, Garneau-Tsodikova, S, Tsodikov, O.V.
Deposit date:2020-02-16
Release date:2020-06-03
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structure-Guided Optimization of Inhibitors of Acetyltransferase Eis fromMycobacterium tuberculosis.
Acs Chem.Biol., 15, 2020
7M9U
DownloadVisualize
BU of 7m9u by Molmil
HIV-1 Protease WT (NL4-3) in Complex with NR02-79
Descriptor: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(2S,3R)-4-{(2-ethylbutyl)[(1S)-1-hydroxy-2,3-dihydro-1H-indene-5-sulfonyl]amino}-3-hydroxy-1-phenylbutan-2-yl]carbamate, Protease, SULFATE ION
Authors:Lockbaum, G.J, Schiffer, C.A.
Deposit date:2021-03-31
Release date:2022-08-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.911 Å)
Cite:HIV-1 Protease WT (NL4-3) in Complex with NR02-79
To Be Published
5IDZ
DownloadVisualize
BU of 5idz by Molmil
Structure of Human Enolase 2 in complex with (S)-(1-hydroxy-2-oxopiperidin-3-yl)phosphonate
Descriptor: Gamma-enolase, MAGNESIUM ION, TRIETHYLENE GLYCOL, ...
Authors:Leonard, P.G, Muller, F.L.
Deposit date:2016-02-24
Release date:2017-02-22
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.63 Å)
Cite:Pomhex, a cell-permeable Enolase inhibitor for Collateral Lethality targeting of ENO1-deleted Glioblastoma
To Be Published
5IE7
DownloadVisualize
BU of 5ie7 by Molmil
Crystal structure of a lactonase double mutant in complex with substrate b
Descriptor: (3S,7S,11E)-7,14,16-trihydroxy-3-methyl-3,4,5,6,7,8,9,10-octahydro-1H-2-benzoxacyclotetradecin-1-one, Zearalenone hydrolase
Authors:Zheng, Y.Y, Xu, Z.X, Liu, W.D, Chen, C.C, Guo, R.T.
Deposit date:2016-02-25
Release date:2017-01-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Enhanced alph-Zearalenol Hydrolyzing Activity of a Mycoestrogen-Detoxifying Lactonase by Structure-Based Engineering
Acs Catalysis, 6, 2016
7M47
DownloadVisualize
BU of 7m47 by Molmil
DNA Polymerase Lambda, TTP:At Mg2+ Product State Ternary Complex, 60 min
Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*CP*AP*GP*TP*AP*CP*T)-3'), DNA (5'-D(*CP*GP*GP*CP*AP*GP*TP*AP*CP*TP*G)-3'), ...
Authors:Jamsen, J.A, Wilson, S.H.
Deposit date:2021-03-21
Release date:2022-07-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.648 Å)
Cite:Watching right and wrong nucleotide insertion captures hidden polymerase fidelity checkpoints.
Nat Commun, 13, 2022
6VWP
DownloadVisualize
BU of 6vwp by Molmil
Crystal structure of E. coli guanosine kinase in complex with ppGpp
Descriptor: GUANOSINE, GUANOSINE-5',3'-TETRAPHOSPHATE, Inosine-guanosine kinase, ...
Authors:Wang, B, Grant, R.A, Laub, M.T.
Deposit date:2020-02-20
Release date:2020-10-07
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:ppGpp Coordinates Nucleotide and Amino-Acid Synthesis in E. coli During Starvation.
Mol.Cell, 80, 2020

243531

数据于2025-10-22公开中

PDB statisticsPDBj update infoContact PDBjnumon