PDB: 72308 resultsInfo pagesStatus searchChemie searchBIRD

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3CGP	X-ray structure of a pseudouridine-containing yeast spliceosomal U2 snRNA-intron branch site duplex bound to iodide ions Descriptor: IODIDE ION, RNA (5'-R(*CP*GP*CP*UP*AP*CP*UP*AP*AP*CP*GP*CP*G)-3'), RNA (5'-R(*GP*CP*GP*CP*GP*(PSU)P*AP*GP*UP*AP*GP*C)-3'), ... Authors: Lin, Y, Kielkopf, C.L. Deposit date: 2008-03-06 Release date: 2008-07-01 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.57 Å) Cite: X-ray structures of U2 snRNA-branchpoint duplexes containing conserved pseudouridines. Biochemistry, 47, 2008
7ELT	Crystal structure of Mycobacterium tuberculosis tryptophanyl-tRNA synthetase complexed with Trp-AMP Descriptor: TRYPTOPHANYL-5'AMP, Tryptophan--tRNA ligase Authors: Xu, M, Chen, S. Deposit date: 2021-04-12 Release date: 2022-02-16 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Investigate Natural Product Indolmycin and the Synthetically Improved Analogue Toward Antimycobacterial Agents. Acs Chem.Biol., 17, 2022
7ENS	Crystal structure of Mycobacterium tuberculosis tryptophanyl-tRNA synthetase complexed with Indolmycin and ATP Descriptor: (5S)-5-[(1R)-1-(1H-indol-3-yl)ethyl]-2-(methylamino)-1,3-oxazol-4(5H)-one, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Xu, M, Chen, S. Deposit date: 2021-04-19 Release date: 2022-02-16 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Investigate Natural Product Indolmycin and the Synthetically Improved Analogue Toward Antimycobacterial Agents. Acs Chem.Biol., 17, 2022
7ENT	Crystal structure of Mycobacterium tuberculosis tryptophanyl-tRNA synthetase complexed with Y-13 and ATP Descriptor: (5S)-2-(methylamino)-5-[(1R)-1-(4-methyl-1H-indol-3-yl)ethyl]-1,3-oxazol-4-one, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Xu, M, Chen, S. Deposit date: 2021-04-19 Release date: 2022-02-16 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Investigate Natural Product Indolmycin and the Synthetically Improved Analogue Toward Antimycobacterial Agents. Acs Chem.Biol., 17, 2022
3CGS	X-ray structure containing the pseudouridylated U2 snRNA and mammalian intron branch site consensus sequences Descriptor: MAGNESIUM ION, RNA (5'-R(*CP*GP*CP*UP*AP*CP*UP*GP*AP*CP*GP*CP*G)-3'), RNA (5'-R(*GP*CP*GP*CP*GP*(PSU)P*AP*GP*UP*AP*GP*C)-3') Authors: Lin, Y, Kielkopf, C.L. Deposit date: 2008-03-06 Release date: 2008-07-01 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.65 Å) Cite: X-ray structures of U2 snRNA-branchpoint duplexes containing conserved pseudouridines. Biochemistry, 47, 2008
2PCW	Solution Structure of an rRNA Substrate Bound to the Pseudouridylation Pocket of a Box H/ACA snoRNA Descriptor: U65 box H/ACA snoRNA, rRNA substrate of U65 box H/ACA snoRNA Authors: Jin, H, Loria, J.P, Moore, P.B. Deposit date: 2007-03-30 Release date: 2007-05-08 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of an rRNA substrate bound to the pseudouridylation pocket of a box H/ACA snoRNA. Mol.Cell, 26, 2007
7EV3	Crystal structure of Mycobacterium tuberculosis tryptophanyl-tRNA synthetase complexed with Y-10 and ATP Descriptor: (5S)-5-[(1R)-1-(4-fluoranyl-1H-indol-3-yl)ethyl]-2-(methylamino)-1,3-oxazol-4-one, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Xu, M, Chen, S. Deposit date: 2021-05-20 Release date: 2022-02-16 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Investigate Natural Product Indolmycin and the Synthetically Improved Analogue Toward Antimycobacterial Agents. Acs Chem.Biol., 17, 2022
7EV2	Crystal structure of Mycobacterium tuberculosis tryptophanyl-tRNA synthetase complexed with Y-11 and ATP Descriptor: (5S)-5-[(1R)-1-(4-chloranyl-1H-indol-3-yl)ethyl]-2-(methylamino)-1,3-oxazol-4-one, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Xu, M, Chen, S. Deposit date: 2021-05-20 Release date: 2022-02-16 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Investigate Natural Product Indolmycin and the Synthetically Improved Analogue Toward Antimycobacterial Agents. Acs Chem.Biol., 17, 2022
1K2G	Structural basis for the 3'-terminal guanosine recognition by the group I intron Descriptor: 5'-R(*CP*AP*GP*AP*CP*UP*UP*CP*GP*GP*UP*CP*GP*CP*AP*GP*AP*GP*AP*UP*GP*G)-3' Authors: Kitamura, Y, Muto, Y, Watanabe, S, Kim, I, Ito, T, Nishiya, Y, Sakamoto, K, Ohtsuki, T, Kawai, G, Watanabe, K, Hosono, K, Takaku, H, Katoh, E, Yamazaki, T, Inoue, T, Yokoyama, S. Deposit date: 2001-09-27 Release date: 2002-05-08 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of an RNA fragment with the P7/P9.0 region and the 3'-terminal guanosine of the tetrahymena group I intron. RNA, 8, 2002
7R6Y	E117K mutant pyruvate kinase from rabbit muscle Descriptor: ACETATE ION, MAGNESIUM ION, OXALATE ION, ... Authors: Rodriguez-Romero, A, Rodriguez-Hernandez, A. Deposit date: 2021-06-24 Release date: 2022-05-25 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.25 Å) Cite: The K + -Dependent and -Independent Pyruvate Kinases Acquire the Active Conformation by Different Mechanisms. Int J Mol Sci, 23, 2022
1YFG	YEAST INITIATOR TRNA Descriptor: YEAST INITIATOR TRNA Authors: Basavappa, R, Sigler, P.B. Deposit date: 1997-05-08 Release date: 1997-09-03 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (3 Å) Cite: The 3 A crystal structure of yeast initiator tRNA: functional implications in initiator/elongator discrimination. EMBO J., 10, 1991
2NR0	Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA Descriptor: leucyl tRNA, tRNA pseudouridine synthase A Authors: Hur, S, Stroud, R.M. Deposit date: 2006-11-01 Release date: 2007-05-15 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (3.9 Å) Cite: How U38, 39, and 40 of Many tRNAs Become the Targets for Pseudouridylation by TruA. Mol.Cell, 26, 2007
2N7C	Solution structure of Plasmodium falciparum SR1-RRM1 in complex with ACAUCA RNA Descriptor: RNA_(5'-R(*AP*CP*AP*UP*CP*A)-3'), putative splicing factor Authors: Ganguly, A.K, Verma, G, Bhavesh, N.S. Deposit date: 2015-09-08 Release date: 2016-10-12 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: The N-terminal RNA Recognition Motif of PfSR1 Confers Semi-specificity for Pyrimidines during RNA Recognition. J. Mol. Biol., 431, 2019
2LLI	Low resolution structure of RNA-binding subunit of the TRAMP complex Descriptor: Protein AIR2, ZINC ION Authors: Holub, P, Lalakova, J, Cerna, H, Sarazova, M, Pasulka, J, Hrazdilova, K, Arce, M.S, Stefl, R, Vanacova, S. Deposit date: 2011-11-10 Release date: 2012-03-21 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Air2p is critical for the assembly and RNA-binding of the TRAMP complex and the KOW domain of Mtr4p is crucial for exosome activation. Nucleic Acids Res., 40, 2012
2NRE	Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA Descriptor: POTASSIUM ION, leucyl tRNA, tRNA pseudouridine synthase A Authors: Hur, S, Stroud, R.M. Deposit date: 2006-11-01 Release date: 2007-05-15 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (4 Å) Cite: How U38, 39, and 40 of Many tRNAs Become the Targets for Pseudouridylation by TruA. Mol.Cell, 26, 2007
8Q4O	RNA G-quadruplex from the 5'-UTR of human tyrosine kinase 2 (TYK2) Descriptor: RNA (5'-R(*CP*GP*GP*UP*AP*GP*CP*GP*GP*GP*UP*AP*UP*GP*GP*GP*UP*CP*CP*GP*GP*GP*U)-3') Authors: Toplishek, M, Kocman, V. Deposit date: 2023-08-07 Release date: 2024-03-06 Method: SOLUTION NMR Cite: High-Resolution Structure of RNA G-Quadruplex Containing Unique Structural Motifs Originating from the 5'-UTR of Human Tyrosine Kinase 2 (TYK2). Acs Omega, 9, 2024
3G1Z	Structure of IDP01693/yjeA, a potential t-RNA synthetase from Salmonella typhimurium Descriptor: ADENOSINE MONOPHOSPHATE, CHLORIDE ION, PHOSPHATE ION, ... Authors: Singer, A.U, Evdokimova, E, Kudritska, M, Cuff, M.E, Edwards, A.M, Anderson, W.F, Savchenko, A, Center for Structural Genomics of Infectious Diseases (CSGID) Deposit date: 2009-01-30 Release date: 2009-03-10 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.95 Å) Cite: PoxA, yjeK, and elongation factor P coordinately modulate virulence and drug resistance in Salmonella enterica. Mol.Cell, 39, 2010
3EQT	Crystal structure of human LGP2 C-terminal domain in complex with dsRNA Descriptor: 5'-R(*GP*CP*GP*CP*GP*CP*GP*C)-3', ATP-dependent RNA helicase DHX58, ZINC ION Authors: Li, P, Li, X. Deposit date: 2008-10-01 Release date: 2009-03-10 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2 Å) Cite: The RIG-I-like Receptor LGP2 Recognizes the Termini of Double-stranded RNA J.Biol.Chem., 284, 2009
4EYA	Crystal Structure of a Plectonemic RNA Supercoil Descriptor: GLYCEROL, N utilization substance protein B homolog, RNA (5'-R(*GP*GP*CP*UP*CP*CP*UP*UP*GP*GP*CP*A)-3'), ... Authors: Stagno, J.R, Ji, X. Deposit date: 2012-05-01 Release date: 2012-06-20 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Crystal structure of a plectonemic RNA supercoil. Nat Commun, 3, 2012
1EI2	STRUCTURAL BASIS FOR RECOGNITION OF THE RNA MAJOR GROOVE IN THE TAU EXON 10 SPLICING REGULATORY ELEMENT BY AMINOGLYCOSIDE ANTIBIOTICS Descriptor: NEOMYCIN, TAU EXON 10 SRE RNA Authors: Varani, L, Spillantini, M.G, Goedert, M, Varani, G. Deposit date: 2000-02-23 Release date: 2000-03-06 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structural basis for recognition of the RNA major groove in the tau exon 10 splicing regulatory element by aminoglycoside antibiotics. Nucleic Acids Res., 28, 2000
1BNR	BARNASE Descriptor: BARNASE (G SPECIFIC ENDONUCLEASE) Authors: Bycroft, M. Deposit date: 1995-03-31 Release date: 1995-07-31 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Determination of the three-dimensional solution structure of barnase using nuclear magnetic resonance spectroscopy. Biochemistry, 30, 1991
3FI0	Crystal Structure Analysis of B. stearothermophilus Tryptophanyl-tRNA Synthetase Complexed with Tryptophan, AMP, and Inorganic Phosphate Descriptor: ADENOSINE MONOPHOSPHATE, PHOSPHATE ION, TRYPTOPHAN, ... Authors: Laowanapiban, P, Kapustina, M, Vonrhein, C, Delarue, M, Koehl, P, Carter Jr, C.W. Deposit date: 2008-12-10 Release date: 2009-02-03 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Independent saturation of three TrpRS subsites generates a partially assembled state similar to those observed in molecular simulations. Proc.Natl.Acad.Sci.Usa, 106, 2009
1FIX	THE STRUCTURE OF AN RNA/DNA HYBRID: A SUBSTRATE OF THE RIBONUCLEASE ACTIVITY OF HIV-1 REVERSE TRANSCRIPTASE Descriptor: DNA (5'-D(*GP*GP*CP*GP*CP*CP*CP*GP*AP*A)-3'), RNA (5'-R(*UP*UP*CP*GP*GP*GP*CP*GP*CP*C)-3') Authors: Horton, N.C, Finzel, B.C. Deposit date: 1996-10-24 Release date: 1996-12-11 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.3 Å) Cite: The structure of an RNA/DNA hybrid: a substrate of the ribonuclease activity of HIV-1 reverse transcriptase. J.Mol.Biol., 264, 1996
1QVA	YEAST INITIATION FACTOR 4A N-TERMINAL DOMAIN Descriptor: INITIATION FACTOR 4A Authors: Johnson, E.R, McKay, D.B. Deposit date: 1999-07-07 Release date: 1999-12-02 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystallographic structure of the amino terminal domain of yeast initiation factor 4A, a representative DEAD-box RNA helicase RNA, 5, 1999
2A9X	TAR RNA recognition by a cyclic peptidomimetic of Tat protein Descriptor: BIV TAR RNA, BIV-2 cyclic peptide Authors: Leeper, T.C, Athanassiou, Z, Dias, R.L, Robinson, J.A, Varani, G. Deposit date: 2005-07-12 Release date: 2005-11-01 Last modified: 2022-03-09 Method: SOLUTION NMR Cite: TAR RNA recognition by a cyclic peptidomimetic of Tat protein. Biochemistry, 44, 2005

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