Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2AKR
DownloadVisualize
BU of 2akr by Molmil
Structural basis of sulfatide presentation by mouse CD1d
Descriptor: (15Z)-N-((1S,2R,3E)-2-HYDROXY-1-{[(3-O-SULFO-BETA-D-GALACTOPYRANOSYL)OXY]METHYL}HEPTADEC-3-ENYL)TETRACOS-15-ENAMIDE, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Zajonc, D.M, Halder, R, Wu, D, Maricic, I, Roy, K, Wong, C.-H, Kumar, V, Wilson, I.A.
Deposit date:2005-08-03
Release date:2005-12-06
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for CD1d presentation of a sulfatide derived from myelin and its implications for autoimmunity
J.Exp.Med., 202, 2005
3BRE
DownloadVisualize
BU of 3bre by Molmil
Crystal Structure of P.aeruginosa PA3702
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), MAGNESIUM ION, Probable two-component response regulator
Authors:De, N, Pirruccello, M, Krasteva, P.V, Bae, N, Raghavan, R.V, Sondermann, H.
Deposit date:2007-12-21
Release date:2008-04-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Phosphorylation-independent regulation of the diguanylate cyclase WspR.
Plos Biol., 6, 2008
4YWA
DownloadVisualize
BU of 4ywa by Molmil
Structural Insight into Divalent Galactoside Binding to Pseudomonas aeruginosa lectin LecA
Descriptor: (2R,3R,4S,5R,6R,2'R,3'R,4'S,5'R,6'R)-2,2'-([(2R,3R,4S,5S,6S)-3,4-dihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2,5-diyl]bis{1H-1,2,3-triazole-1,4-diyl[(2S,3R,4S,5S,6S)-3,4-dihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2,5-diyl]-1H-1,2,3-triazole-1,4-diylmethanediyloxy})bis[6-(hydroxymethyl)tetrahydro-2H-pyran-3,4,5-triol], CALCIUM ION, PA-I galactophilic lectin
Authors:Visini, R, Jin, X, Michaud, G, Bergmann, M, Gillon, E, Imberty, A, Stocker, A, Darbre, T, Pieters, R, Reymond, J.-L.
Deposit date:2015-03-20
Release date:2015-09-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.192 Å)
Cite:Structural Insight into Multivalent Galactoside Binding to Pseudomonas aeruginosa Lectin LecA.
Acs Chem.Biol., 10, 2015
1LS3
DownloadVisualize
BU of 1ls3 by Molmil
Crystal Structure of the Complex between Rabbit Cytosolic Serine Hydroxymethyltransferase and TriGlu-5-formyl-tetrahydrofolate
Descriptor: 2-[4-(4-{4-[(2-AMINO-5-FORMYL-4-OXO-3,4,5,6,7,8-HEXAHYDRO-PTERIDIN-6-YLMETHYL)-AMINO]-BENZOYLAMINO}-4-CARBOXY-BUTYRYLAM INO)-4-CARBOXY-BUTYRYLAMINO]-PENTANEDIOIC ACID, GLYCEROL, GLYCINE, ...
Authors:Fu, T.F, Scarsdale, J.N, Kazanina, G, Schirch, V, Wright, H.T.
Deposit date:2002-05-16
Release date:2003-02-04
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Location of the Pteroylpolyglutamate Binding Site on Rabbit Cytosolic Serine Hydroxymethyltransferase
J.Biol.Chem., 278, 2003
2OUI
DownloadVisualize
BU of 2oui by Molmil
D275P mutant of alcohol dehydrogenase from protozoa Entamoeba histolytica
Descriptor: 1,2-ETHANEDIOL, CACODYLATE ION, CHLORIDE ION, ...
Authors:Frolow, F, Shimon, L, Burstein, Y, Goihberg, E, Peretz, M, Dym, O.
Deposit date:2007-02-11
Release date:2008-02-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Thermal stabilization of the protozoan Entamoeba histolytica alcohol dehydrogenase by a single proline substitution.
Proteins, 72, 2008
3UG7
DownloadVisualize
BU of 3ug7 by Molmil
Crystal Structure of Get3 from Methanocaldococcus jannaschii
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ZINC ION, ...
Authors:Suloway, C.J.M, Rome, M.E, Clemons Jr, W.M.
Deposit date:2011-11-02
Release date:2011-12-07
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.901 Å)
Cite:Tail-anchor targeting by a Get3 tetramer: the structure of an archaeal homologue.
Embo J., 31, 2012
3UG6
DownloadVisualize
BU of 3ug6 by Molmil
Crystal Structure of Get3 from Methanocaldococcus jannaschii
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ZINC ION, ...
Authors:Suloway, C.J.M, Rome, M.E, Clemons Jr, W.M.
Deposit date:2011-11-02
Release date:2011-12-07
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Tail-anchor targeting by a Get3 tetramer: the structure of an archaeal homologue.
Embo J., 31, 2012
1MB6
DownloadVisualize
BU of 1mb6 by Molmil
Three dimensional solution structure of huwentoxin-IV by 2D 1H-NMR
Descriptor: huwentoxin-iv
Authors:Peng, K, Shu, Q, Liang, S.P.
Deposit date:2002-08-02
Release date:2002-08-21
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Function and solution structure of huwentoxin-IV, a potent neuronal tetrodotoxin (TTX)-sensitive sodium channel antagonist from Chinese bird spider Selenocosmia huwena
J.Biol.Chem., 277, 2002
6KB5
DownloadVisualize
BU of 6kb5 by Molmil
X-ray structure of human PPARalpha ligand binding domain-5,8,11,14-eicosatetraynoic Acid (ETYA) co-crystals obtained by delipidation and cross-seeding
Descriptor: GLYCEROL, Peroxisome proliferator-activated receptor alpha, icosa-5,8,11,14-tetraynoic acid
Authors:Kamata, S, Saito, K, Honda, A, Ishikawa, R, Oyama, T, Ishii, I.
Deposit date:2019-06-24
Release date:2020-11-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates.
Iscience, 23, 2020
6YYZ
DownloadVisualize
BU of 6yyz by Molmil
tRNA-Guanine Transglycosylase (TGT) labeled with 5-fluorotryptophan in co-crystallized complex with 6-amino-2-(methylamino)-4-(2-((2R,3R,4R,5R)-3,4,5-trimethoxytetrahydrofuran-2-yl)ethyl)-1,7-dihydro-8H-imidazo[4,5-g]quinazolin-8-one
Descriptor: 6-amino-2-(methylamino)-4-(2-((2R,3R,4R,5R)-3,4,5-trimethoxytetrahydrofuran-2-yl)ethyl)-1H-imidazo[4,5-g]quinazolin-8(7H)-one, Queuine tRNA-ribosyltransferase, ZINC ION
Authors:Nguyen, A, Heine, A, Klebe, G.
Deposit date:2020-05-06
Release date:2020-05-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.21 Å)
Cite:Co-crystallization, 19F NMR and nanoESI-MS reveal dimer disturbing inhibitors and conformational changes at dimer contacts
To Be Published
2XRO
DownloadVisualize
BU of 2xro by Molmil
Crystal structure of TtgV in complex with its DNA operator
Descriptor: HTH-TYPE TRANSCRIPTIONAL REGULATOR TTGV, OSMIUM ION, TTGV OPERATOR DNA
Authors:Lu, D, Fillet, S, Meng, C, Alguel, Y, Kloppsteck, P, Bergeron, J, Krell, T, Gallegos, M.-T, Ramos, J, Zhang, X.
Deposit date:2010-09-17
Release date:2010-12-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Crystal Structure of Ttgv in Complex with its DNA Operator Reveals a General Model for Cooperative DNA Binding of Tetrameric Gene Regulators.
Genes Dev., 24, 2010
6QPX
DownloadVisualize
BU of 6qpx by Molmil
Crystal structure of nitrite bound Y323A mutant of haem-Cu containing nitrite reductase from Ralstonia pickettii
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase, HEME C, ...
Authors:Antonyuk, S.V, Shenoy, R.T, Hedison, T.M, Eady, R.R, Hasnain, S.S, Scrutton, N.S.
Deposit date:2019-02-15
Release date:2019-11-06
Last modified:2020-02-26
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Unexpected Roles of a Tether Harboring a Tyrosine Gatekeeper Residue in Modular Nitrite Reductase Catalysis.
Acs Catalysis, 9, 2019
6QQ2
DownloadVisualize
BU of 6qq2 by Molmil
Crystal structure of nitrite bound Y323F mutant of haem-Cu containing nitrite reductase from Ralstonia pickettii
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase, HEME C, ...
Authors:Antonyuk, S.V, Shenoy, R.T, Hedison, T.M, Eady, R.R, Hasnain, S.S, Scrutton, N.S.
Deposit date:2019-02-16
Release date:2019-11-06
Last modified:2020-02-26
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Unexpected Roles of a Tether Harboring a Tyrosine Gatekeeper Residue in Modular Nitrite Reductase Catalysis.
Acs Catalysis, 9, 2019
3UWL
DownloadVisualize
BU of 3uwl by Molmil
Crystal structure of Enteroccocus faecalis thymidylate synthase (EfTS) in complex with 5-formyl tetrahydrofolate
Descriptor: 1,2-ETHANEDIOL, N-[4-({[(6S)-2-amino-5-formyl-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid, SULFATE ION, ...
Authors:Pozzi, C, Catalano, A, Cortesi, D, Luciani, R, Ferrari, S, Fritz, T, Costi, M.P, Mangani, S.
Deposit date:2011-12-02
Release date:2012-08-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:The structure of Enterococcus faecalis thymidylate synthase provides clues about folate bacterial metabolism.
Acta Crystallogr.,Sect.D, 68, 2012
6QQ1
DownloadVisualize
BU of 6qq1 by Molmil
Crystal structure of as isolated Y323F mutant of haem-Cu containing nitrite reductase from Ralstonia pickettii
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase, GLYCEROL, ...
Authors:Antonyuk, S.V, Shenoy, R.T, Hedison, T.M, Eady, R.R, Hasnain, S.S, Scrutton, N.S.
Deposit date:2019-02-16
Release date:2019-11-06
Last modified:2020-02-26
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Unexpected Roles of a Tether Harboring a Tyrosine Gatekeeper Residue in Modular Nitrite Reductase Catalysis.
Acs Catalysis, 9, 2019
6QPV
DownloadVisualize
BU of 6qpv by Molmil
Crystal structure of as isolated Y323A mutant of haem-Cu containing nitrite reductase from Ralstonia pickettii
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase, HEME C
Authors:Antonyuk, S.V, Shenoy, R.T, Hedison, T.M, Eady, R.R, Hasnain, S.S, Scrutton, N.S.
Deposit date:2019-02-15
Release date:2019-11-06
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Unexpected Roles of a Tether Harboring a Tyrosine Gatekeeper Residue in Modular Nitrite Reductase Catalysis.
Acs Catalysis, 9, 2019
6QQ0
DownloadVisualize
BU of 6qq0 by Molmil
Crystal structure of nitrite bound Y323E mutant of haem-Cu containing nitrite reductase from Ralstonia pickettii
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase, GLYCEROL, ...
Authors:Antonyuk, S.V, Shenoy, R.T, Hedison, T.M, Eady, R.R, Hasnain, S.S, Scrutton, N.S.
Deposit date:2019-02-16
Release date:2019-11-06
Last modified:2020-02-26
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Unexpected Roles of a Tether Harboring a Tyrosine Gatekeeper Residue in Modular Nitrite Reductase Catalysis.
Acs Catalysis, 9, 2019
5Y2J
DownloadVisualize
BU of 5y2j by Molmil
Crystal structure of the oligomerization domain of NSP4 from rotavirus strain MF66
Descriptor: 1,2-ETHANEDIOL, NICKEL (II) ION, Nonstructural protein 4
Authors:Suguna, K, Kumar, S.
Deposit date:2017-07-26
Release date:2018-03-14
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:New tetrameric forms of the rotavirus NSP4 with antiparallel helices.
Arch. Virol., 163, 2018
5Y2E
DownloadVisualize
BU of 5y2e by Molmil
Crystal structure of the oligomerization domain of NSP4 from the rotavirus strain NCDV
Descriptor: Non-structural glycoprotein 4
Authors:Suguna, K, Kumar, S.
Deposit date:2017-07-25
Release date:2018-03-14
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:New tetrameric forms of the rotavirus NSP4 with antiparallel helices.
Arch. Virol., 163, 2018
5Y2H
DownloadVisualize
BU of 5y2h by Molmil
Crystal structure of the oligomerization domain of NSP4 from the rotavirus strain MF66
Descriptor: Nonstructural protein 4
Authors:Suguna, K, Kumar, S.
Deposit date:2017-07-25
Release date:2018-03-14
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:New tetrameric forms of the rotavirus NSP4 with antiparallel helices.
Arch. Virol., 163, 2018
8FMH
DownloadVisualize
BU of 8fmh by Molmil
Structure of CBASS Cap5 from Pseudomonas syringae as an activated tetramer with the cyclic dinucleotide 3'2'-c-dGAMP ligand (2 tetramers in the AU)
Descriptor: 3'2'-cGAMP, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Rechkoblit, O, Kreitler, D.F, Aggarwal, A.K.
Deposit date:2022-12-23
Release date:2024-02-07
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Activation of CBASS Cap5 endonuclease immune effector by cyclic nucleotides.
Nat.Struct.Mol.Biol., 31, 2024
7X0F
DownloadVisualize
BU of 7x0f by Molmil
Structure of Pseudomonas NRPS protein, AmbB-TC bound to Ppant
Descriptor: 4'-PHOSPHOPANTETHEINE, AMB antimetabolite synthase AmbB
Authors:ChuYuanKee, M, Bharath, S.R, Song, H.
Deposit date:2022-02-22
Release date:2022-06-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural insights into the substrate-bound condensation domains of non-ribosomal peptide synthetase AmbB.
Sci Rep, 12, 2022
2H1C
DownloadVisualize
BU of 2h1c by Molmil
Crystal Structure of FitAcB from Neisseria gonorrhoeae
Descriptor: ACETATE ION, MAGNESIUM ION, SULFATE ION, ...
Authors:Mattison, K, Wilbur, J.S, So, M, Brennan, R.G.
Deposit date:2006-05-16
Release date:2006-09-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of FitAB from Neisseria gonorrhoeae bound to DNA reveals a tetramer of toxin-antitoxin heterodimers containing pin domains and ribbon-helix-helix motifs.
J.Biol.Chem., 281, 2006
7OZ3
DownloadVisualize
BU of 7oz3 by Molmil
S. agalactiae BusR in complex with its busA-promotor DNA
Descriptor: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, GntR family transcriptional regulator, pBusA_for, ...
Authors:Bandera, A.M, Witte, G.
Deposit date:2021-06-25
Release date:2021-08-11
Last modified:2021-10-13
Method:ELECTRON MICROSCOPY (4.46 Å)
Cite:BusR senses bipartite DNA binding motifs by a unique molecular ruler architecture.
Nucleic Acids Res., 49, 2021
8EBO
DownloadVisualize
BU of 8ebo by Molmil
Homopurine parallel G-quadruplex from human chromosome 7 stabilized by K+ ions
Descriptor: COBALT (III) ION, DNA (5'-D(*GP*AP*GP*GP*GP*AP*GP*GP*GP*AP*GP*GP*GP*AP*AP*AP*AP*GP*GP*GP*GP*A)-3'), N-METHYLMESOPORPHYRIN, ...
Authors:Chen, E.V, Yatsunyk, L.A.
Deposit date:2022-08-31
Release date:2022-12-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Homopurine guanine-rich sequences in complex with N-methyl mesoporphyrin IX form parallel G-quadruplex dimers and display a unique symmetry tetrad.
Bioorg.Med.Chem., 77, 2022

222415

数据于2024-07-10公开中

PDB statisticsPDBj update infoContact PDBjnumon