Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5C8F
DownloadVisualize
BU of 5c8f by Molmil
Crystal structure of light-exposed full-length Thermus thermophilus CarH bound to cobalamin
Descriptor: CHLORIDE ION, COBALAMIN, GLYCEROL, ...
Authors:Jost, M, Drennan, C.L.
Deposit date:2015-06-25
Release date:2015-09-30
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structural basis for gene regulation by a B12-dependent photoreceptor.
Nature, 526, 2015
2H79
DownloadVisualize
BU of 2h79 by Molmil
Crystal Structure of human TR alpha bound T3 in orthorhombic space group
Descriptor: 3,5,3'TRIIODOTHYRONINE, THRA protein
Authors:Nascimento, A.S, Dias, S.M.G, Nunes, F.M, Aparicio, R, Bleicher, L, Ambrosio, A.L.B, Figueira, A.C.M, Santos, M.A.M, Neto, M.O, Fischer, H, Togashi, H.F.M, Craievich, A.F, Garrat, R.C, Baxter, J.D, Webb, P, Polikarpov, I.
Deposit date:2006-06-01
Release date:2006-07-25
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Structural rearrangements in the thyroid hormone receptor hinge domain and their putative role in the receptor function.
J.Mol.Biol., 360, 2006
3B0C
DownloadVisualize
BU of 3b0c by Molmil
Crystal structure of the chicken CENP-T histone fold/CENP-W complex, crystal form I
Descriptor: CITRIC ACID, Centromere protein T, Centromere protein W
Authors:Nishino, T, Takeuchi, K, Gascoigne, K.E, Suzuki, A, Hori, T, Oyama, T, Morikawa, K, Cheeseman, I.M, Fukagawa, T.
Deposit date:2011-06-08
Release date:2012-03-07
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.201 Å)
Cite:CENP-T-W-S-X Forms a Unique Centromeric Chromatin Structure with a Histone-like Fold.
Cell(Cambridge,Mass.), 148, 2012
3OV8
DownloadVisualize
BU of 3ov8 by Molmil
Crystal structure of AF1382 from Archaeoglobus fulgidus, High resolution
Descriptor: ACETATE ION, CHLORIDE ION, Protein AF_1382
Authors:Zhu, J.-Y, Zhao, M, Fu, Z.-Q, Yang, H, Chang, J, Hao, X, Chen, L, Rose, J.P, Wang, B.C, Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2010-09-16
Release date:2011-11-16
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.8501 Å)
Cite:Structure of the Archaeoglobus fulgidus orphan ORF AF1382 determined by sulfur SAD from a moderately diffracting crystal.
Acta Crystallogr.,Sect.D, 68, 2012
3P9T
DownloadVisualize
BU of 3p9t by Molmil
SmeT-Triclosan complex
Descriptor: Repressor, SULFATE ION, TRICLOSAN
Authors:Hernandez, A, Ruiz, F.M, Romero, A, Martinez, J.L.
Deposit date:2010-10-18
Release date:2011-08-10
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:The Binding of Triclosan to SmeT, the Repressor of the Multidrug Efflux Pump SmeDEF, Induces Antibiotic Resistance in Stenotrophomonas maltophilia.
Plos Pathog., 7, 2011
8G6Q
DownloadVisualize
BU of 8g6q by Molmil
H2AK119ub-modified nucleosome ubiquitin position 1
Descriptor: 601 DNA (147-MER), Histone H2A, Histone H2B 1.1, ...
Authors:Hicks, C.W, Wolberger, C, Keogh, M.
Deposit date:2023-02-15
Release date:2024-02-21
Last modified:2024-09-25
Method:ELECTRON MICROSCOPY (3.41 Å)
Cite:Ubiquitinated histone H2B as gatekeeper of the nucleosome acidic patch.
Nucleic Acids Res., 52, 2024
8G6S
DownloadVisualize
BU of 8g6s by Molmil
H2AK119ub-modified nucleosome ubiquitin position 2
Descriptor: 601 DNA (147-MER), Histone H2A, Histone H2B 1.1, ...
Authors:Hicks, C.W, Wolberger, C, Keogh, M.
Deposit date:2023-02-15
Release date:2024-02-21
Last modified:2024-09-25
Method:ELECTRON MICROSCOPY (3.47 Å)
Cite:Ubiquitinated histone H2B as gatekeeper of the nucleosome acidic patch.
Nucleic Acids Res., 52, 2024
5TMX
DownloadVisualize
BU of 5tmx by Molmil
Solution Structure of SinI, antagonist to the master biofilm-regulator SinR in Bacillus subtilis
Descriptor: Protein SinI
Authors:Draughn, G.L, Bobay, B.G, Stowe, S.D, Thompson, R.J, Cavanagh, J.
Deposit date:2016-10-13
Release date:2017-10-25
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The Solution Structures and Interaction of SinR and SinI: Elucidating the Mechanism of Action of the Master Regulator Switch for Biofilm Formation in Bacillus subtilis.
J.Mol.Biol., 2019
6LW3
DownloadVisualize
BU of 6lw3 by Molmil
Crystal structure of RuvC from Pseudomonas aeruginosa
Descriptor: Crossover junction endodeoxyribonuclease RuvC
Authors:Hu, Y, He, Y, Lin, Z.
Deposit date:2020-02-07
Release date:2020-02-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Biochemical and structural characterization of the Holliday junction resolvase RuvC from Pseudomonas aeruginosa.
Biochem.Biophys.Res.Commun., 525, 2020
1AYZ
DownloadVisualize
BU of 1ayz by Molmil
CRYSTAL STRUCTURE OF THE SACCHAROMYCES CEREVISIAE UBIQUITIN-CONJUGATING ENZYME RAD6 (UBC2) AT 2.6A RESOLUTION
Descriptor: UBIQUITIN-CONJUGATING ENZYME RAD6
Authors:Worthylake, D.K, Prakash, S, Prakash, L, Hill, C.P.
Deposit date:1997-11-12
Release date:1998-08-26
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of the Saccharomyces cerevisiae ubiquitin-conjugating enzyme Rad6 at 2.6 A resolution.
J.Biol.Chem., 273, 1998
8K3F
DownloadVisualize
BU of 8k3f by Molmil
Crystal structure of the recombination mediator protein RecR from Campylobacter jejuni
Descriptor: Recombination protein RecR, ZINC ION
Authors:Lee, S.J, Yoon, S.I.
Deposit date:2023-07-15
Release date:2023-11-01
Method:X-RAY DIFFRACTION (2.603 Å)
Cite:Structural and Biochemical Analysis of the Recombination Mediator Protein RecR from Campylobacter jejuni.
Int J Mol Sci, 24, 2023
6ASC
DownloadVisualize
BU of 6asc by Molmil
Mre11 dimer in complex with Endonuclease inhibitor PFM04
Descriptor: (5E)-3-butyl-5-[(4-hydroxyphenyl)methylidene]-2-sulfanylidene-1,3-thiazolidin-4-one, 1,2-ETHANEDIOL, MANGANESE (II) ION, ...
Authors:Moiani, D, Arvai, A.S, Tainer, J.A.
Deposit date:2017-08-24
Release date:2018-03-07
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Targeting Allostery with Avatars to Design Inhibitors Assessed by Cell Activity: Dissecting MRE11 Endo- and Exonuclease Activities.
Meth. Enzymol., 601, 2018
6JGF
DownloadVisualize
BU of 6jgf by Molmil
Crystal structure of Se-Met CadR from P. putida with a 21 residue C-terminal truncation
Descriptor: CadR, PHOSPHATE ION
Authors:Liu, X.C, Gan, J.H, Chen, H.
Deposit date:2019-02-13
Release date:2019-09-25
Last modified:2019-10-23
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Selective cadmium regulation mediated by a cooperative binding mechanism in CadR.
Proc.Natl.Acad.Sci.USA, 116, 2019
6JGV
DownloadVisualize
BU of 6jgv by Molmil
Crystal structure of the transcriptional regulator CadR from P. putida
Descriptor: CadR
Authors:Liu, X.C, Gan, J.H, Chen, H.
Deposit date:2019-02-15
Release date:2019-09-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Selective cadmium regulation mediated by a cooperative binding mechanism in CadR.
Proc.Natl.Acad.Sci.USA, 116, 2019
2IW5
DownloadVisualize
BU of 2iw5 by Molmil
Structural Basis for CoREST-Dependent Demethylation of Nucleosomes by the Human LSD1 Histone Demethylase
Descriptor: AMMONIUM ION, CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Yang, M, Gocke, C.B, Luo, X, Borek, D, Tomchick, D.R, Machius, M, Otwinowski, Z, Yu, H.
Deposit date:2006-06-26
Release date:2006-08-09
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Structural Basis for Corest-Dependent Demethylation of Nucleosomes by the Human Lsd1 Histone Demethylase
Mol.Cell, 23, 2006
6M3G
DownloadVisualize
BU of 6m3g by Molmil
Crystal structure of human HPF1
Descriptor: Histone PARylation factor 1
Authors:Sun, F.H, Yun, C.H.
Deposit date:2020-03-03
Release date:2021-03-03
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:HPF1 remodels the active site of PARP1 to enable the serine ADP-ribosylation of histones.
Nat Commun, 12, 2021
6M3H
DownloadVisualize
BU of 6m3h by Molmil
Crystal structure of mouse HPF1
Descriptor: Histone PARylation factor 1
Authors:Sun, F.H, Yun, C.H.
Deposit date:2020-03-03
Release date:2021-03-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:HPF1 remodels the active site of PARP1 to enable the serine ADP-ribosylation of histones.
Nat Commun, 12, 2021
8BUO
DownloadVisualize
BU of 8buo by Molmil
Structure of DDB1 bound to DS24-engaged CDK12-cyclin K
Descriptor: (2~{R})-2-[[6-[(3-fluoranyl-4-pyridin-2-yl-phenyl)methylamino]-9-propan-2-yl-purin-2-yl]amino]butan-1-ol, Cyclin-K, Cyclin-dependent kinase 12, ...
Authors:Kozicka, Z, Kempf, G, Petzold, G, Thoma, N.H.
Deposit date:2022-11-30
Release date:2023-09-13
Last modified:2024-01-03
Method:X-RAY DIFFRACTION (3.58 Å)
Cite:Design principles for cyclin K molecular glue degraders.
Nat.Chem.Biol., 20, 2024
4YKE
DownloadVisualize
BU of 4yke by Molmil
Crystal structure of eukaryotic Mre11 catalytic domain from Chaetomium thermophilum
Descriptor: MANGANESE (II) ION, Mre11
Authors:Seifert, F.U, Lammens, K, Hopfner, K.-P.
Deposit date:2015-03-04
Release date:2015-06-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.783 Å)
Cite:Structure of the catalytic domain of Mre11 from Chaetomium thermophilum.
Acta Crystallogr.,Sect.F, 71, 2015
6W1S
DownloadVisualize
BU of 6w1s by Molmil
Atomic model of the mammalian Mediator complex
Descriptor: Mediator of RNA polymerase II transcription subunit 1, Mediator of RNA polymerase II transcription subunit 10, Mediator of RNA polymerase II transcription subunit 11, ...
Authors:Zhao, H, Young, N, Asturias, F.
Deposit date:2020-03-04
Release date:2021-03-10
Method:ELECTRON MICROSCOPY (4.02 Å)
Cite:A Pliable Mediator Acts as a Functional Rather Than an Architectural Bridge between Promoters and Enhancers.
Cell, 178, 2019
6QLE
DownloadVisualize
BU of 6qle by Molmil
Structure of inner kinetochore CCAN complex
Descriptor: Central kinetochore subunit CTF3,Inner kinetochore subunit CTF3,Central kinetochore subunit CTF3,Inner kinetochore subunit CTF3, Central kinetochore subunit MCM16,Central kinetochore subunit MCM16,Inner kinetochore subunit MCM16,Mcm16p, Inner kinetochore subunit AME1,Inner kinetochore subunit AME1,Inner kinetochore subunit AME1,Inner kinetochore subunit AME1, ...
Authors:Yan, K, Yang, J, Zhang, Z, McLaughlin, S.H, Chang, L, Fasci, D, Heck, A.J.R, Barford, D.
Deposit date:2019-01-31
Release date:2019-10-02
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.55 Å)
Cite:Structure of the inner kinetochore CCAN complex assembled onto a centromeric nucleosome.
Nature, 574, 2019
6CPB
DownloadVisualize
BU of 6cpb by Molmil
Crystal structure of the heme domain of CooA from Carboxydothermus hydrogenoformans
Descriptor: Carbon monoxide oxidation system transcription regulator CooA-1, GLYCEROL, SULFATE ION
Authors:Tripathi, S.M, Poulos, T.L.
Deposit date:2018-03-13
Release date:2018-05-16
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.155 Å)
Cite:Testing the N-Terminal Velcro Model of CooA Carbon Monoxide Activation.
Biochemistry, 57, 2018
6QLF
DownloadVisualize
BU of 6qlf by Molmil
Structure of inner kinetochore CCAN complex with mask1
Descriptor: Inner kinetochore subunit AME1, Inner kinetochore subunit CHL4, Inner kinetochore subunit CTF19, ...
Authors:Yan, K, Yang, J, Zhang, Z, McLaughlin, S.H, Chang, L, Fasci, D, Heck, A.J.R, Barford, D.
Deposit date:2019-01-31
Release date:2019-10-02
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.45 Å)
Cite:Structure of the inner kinetochore CCAN complex assembled onto a centromeric nucleosome.
Nature, 574, 2019
7FTN
DownloadVisualize
BU of 7ftn by Molmil
Crystal Structure of human cyclic GMP-AMP synthase in complex with propanedioic acid
Descriptor: Cyclic GMP-AMP synthase, DNA (5'-D(*AP*AP*AP*TP*TP*GP*CP*CP*GP*AP*AP*GP*AP*CP*GP*A)-3'), DNA (5'-D(*TP*CP*GP*TP*CP*TP*TP*CP*GP*GP*CP*AP*AP*TP*T)-3'), ...
Authors:Leibrock, L, Benz, J, Groebke-Zbinden, K, Urban, R, Rudolph, M.G.
Deposit date:2023-02-08
Release date:2024-02-21
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Crystal Structure of a human cyclic GMP-AMP synthase complex
To be published
8SM3
DownloadVisualize
BU of 8sm3 by Molmil
Structure of Bacillus cereus VD045 Gabija GajA-GajB Complex
Descriptor: Endonuclease GajA, Gabija protein GajB, SULFATE ION
Authors:Antine, S.P, Mooney, S.E, Johnson, A.G, Kranzusch, P.J.
Deposit date:2023-04-25
Release date:2023-11-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis of Gabija anti-phage defence and viral immune evasion.
Nature, 625, 2024

225946

건을2024-10-09부터공개중

PDB statisticsPDBj update infoContact PDBjnumon