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9AVT
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BU of 9avt by Molmil
Structure of TAB2 NZF domain bound to K6 / Lys6-linked diubiquitin
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, SULFATE ION, TGF-beta-activated kinase 1 and MAP3K7-binding protein 2, ...
Authors:Michel, M.A, Scutts, S, Komander, D.
Deposit date:2024-03-04
Release date:2024-07-31
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure of TAB2 NZF domain bound to K6 / Lys6-linked diubiquitin
To be published
9AVW
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BU of 9avw by Molmil
Structure of TAB2 NZF domain bound to K6 / Lys6-linked diubiquitin
Descriptor: SULFATE ION, TGF-beta-activated kinase 1 and MAP3K7-binding protein 2, Ubiquitin, ...
Authors:Michel, M.A, Scutts, S, Komander, D.
Deposit date:2024-03-05
Release date:2024-07-31
Method:X-RAY DIFFRACTION (1.747 Å)
Cite:Structure of TAB2 NZF domain bound to K6 / Lys6-linked diubiquitin
To be published
6OQ1
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BU of 6oq1 by Molmil
Crystal Structure of Branched K11/K48-Linked Tri-Ubiquitin
Descriptor: Ubiquitin
Authors:Boughton, A.J, Fushman, D.
Deposit date:2019-04-25
Release date:2019-10-23
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Branching via K11 and K48 Bestows Ubiquitin Chains with a Unique Interdomain Interface and Enhanced Affinity for Proteasomal Subunit Rpn1.
Structure, 28, 2020
5M93
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BU of 5m93 by Molmil
Crystal structure of SdeA-modified ubiquitin.
Descriptor: Polyubiquitin-B, SULFATE ION, alpha-D-ribofuranose
Authors:Kalayil, S, Bhogaraju, S, Dikic, I.
Deposit date:2016-10-31
Release date:2016-12-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.793 Å)
Cite:Phosphoribosylation of Ubiquitin Promotes Serine Ubiquitination and Impairs Conventional Ubiquitination.
Cell, 167, 2016
5MN9
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BU of 5mn9 by Molmil
Crystal structure of MINDY-1 tMIU in complex with K48-diUb
Descriptor: Ubiquitin carboxyl-terminal hydrolase MINDY-1, Ubiquitin-40S ribosomal protein S27a
Authors:Kristariyanto, Y.A, Abdul Rehman, S.A, Kulathu, Y.
Deposit date:2016-12-13
Release date:2017-01-25
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:A single MIU motif of MINDY-1 recognizes K48-linked polyubiquitin chains.
EMBO Rep., 18, 2017
7RMA
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BU of 7rma by Molmil
Structure of the fourth UIM (Ubiquitin Interacting Motif) of ANKRD13D in complex with a high affinity UbV (Ubiquitin Variant)
Descriptor: Ankyrin repeat domain-containing protein 13D, SODIUM ION, SULFATE ION, ...
Authors:Singer, A.U, Manczyk, N, Veggiani, G, Sicheri, F, Sidhu, S.S.
Deposit date:2021-07-27
Release date:2022-05-11
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Panel of Engineered Ubiquitin Variants Targeting the Family of Human Ubiquitin Interacting Motifs.
Acs Chem.Biol., 17, 2022
6OQ2
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BU of 6oq2 by Molmil
NMR Structure of Branched K11/K48-Linked Tri-Ubiquitin
Descriptor: Ubiquitin
Authors:Boughton, A.J, Fushman, D.
Deposit date:2019-04-25
Release date:2019-10-23
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Branching via K11 and K48 Bestows Ubiquitin Chains with a Unique Interdomain Interface and Enhanced Affinity for Proteasomal Subunit Rpn1.
Structure, 28, 2020
5NL4
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BU of 5nl4 by Molmil
Crystal structure of Zn1.3-E16V human ubiquitin (hUb) mutant adduct, from a solution 35 mM zinc acetate/1.3 mM E16V hUb
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Fermani, S, Falini, G.
Deposit date:2017-04-04
Release date:2017-04-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium.
Chemistry, 24, 2018
7S6O
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BU of 7s6o by Molmil
The crystal structure of Lys48-linked di-ubiquitin
Descriptor: ACETATE ION, Ubiquitin
Authors:Osipiuk, J, Tesar, C, Lanham, B.T, Wydorski, P, Fushman, D, Joachimiak, L, Joachimiak, A.
Deposit date:2021-09-14
Release date:2021-09-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Dual domain recognition determines SARS-CoV-2 PLpro selectivity for human ISG15 and K48-linked di-ubiquitin.
Nat Commun, 14, 2023
7S6P
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BU of 7s6p by Molmil
The crystal structure of human ISG15
Descriptor: Ubiquitin-like protein ISG15
Authors:Osipiuk, J, Tesar, C, Jedrzejczak, R, Endres, M, Wydorski, P, Joachimiak, L, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2021-09-14
Release date:2021-09-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Dual domain recognition determines SARS-CoV-2 PLpro selectivity for human ISG15 and K48-linked di-ubiquitin.
Nat Commun, 14, 2023
6P81
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BU of 6p81 by Molmil
Structure of DNA polymerase III, beta subunit/ beta sliding clamp from Klebsiella pneumoniae, expressed with an N-terminal His-Smt3 fusion tag, in complex with Griselimycin
Descriptor: 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE, ACETATE ION, CALCIUM ION, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2019-06-06
Release date:2019-07-10
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structure of DNA polymerase III, beta subunit/ beta sliding clamp from Klebsiella pneumoniae, expressed with an N-terminal His-Smt3 fusion tag, in complex with Griselimycin
to be published
5NMC
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BU of 5nmc by Molmil
Crystal structure of Zn3-hUb(human ubiquitin) adduct from a solution 70 mM zinc acetate/20% v/v TFE/1.3 mM hUb
Descriptor: ACETATE ION, Polyubiquitin-C, ZINC ION
Authors:Fermani, S, Falini, G.
Deposit date:2017-04-05
Release date:2017-05-03
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium.
Chemistry, 24, 2018
5NL5
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BU of 5nl5 by Molmil
Crystal structure of Zn1.7-E16V human ubiquitin (hUb) mutant adduct, from a solution 70 mM zinc acetate/1.3 mM E16V hUb
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Polyubiquitin-B, ...
Authors:Fermani, S, Falini, G.
Deposit date:2017-04-04
Release date:2017-04-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium.
Chemistry, 24, 2018
5NLF
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BU of 5nlf by Molmil
Crystal structure of Zn2.7-E16V human ubiquitin (hUb) mutant adduct, from a solution 100 mM zinc acetate/1.3 mM E16V hUb
Descriptor: ACETATE ION, Polyubiquitin-C, ZINC ION
Authors:Fermani, S, Falini, G.
Deposit date:2017-04-04
Release date:2017-05-03
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium.
Chemistry, 24, 2018
5NLJ
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BU of 5nlj by Molmil
Crystal structure of Zn3-E16V human ubiquitin (hUb) mutant adduct, from a solution 70 mM zinc acetate/20% v/v TFE/1.3 mM E16V hUb
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Fermani, S, Falini, G.
Deposit date:2017-04-04
Release date:2017-04-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium.
Chemistry, 24, 2018
5N9V
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BU of 5n9v by Molmil
NMR solution structure of ubl5 domain from polyubiquitin locus of T.thermophila.
Descriptor: NAD(P)(+)--arginine ADP-ribosyltransferase
Authors:Chiarini, V, Tossavainen, H.
Deposit date:2017-02-27
Release date:2018-03-21
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:NMR structure of a non-conjugatable, ADP-ribosylation associated, ubiquitin-like domain from Tetrahymena thermophila polyubiquitin locus.
Biochim Biophys Acta Gen Subj, 1863, 2019
5NLI
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BU of 5nli by Molmil
Crystal structure of Zn2-E16V human ubiquitin (hUb) mutant adduct, from a solution 35 mM zinc acetate/10% v/v TFE/1.3 mM E16V hUb
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Polyubiquitin-C, ...
Authors:Fermani, S, Falini, G.
Deposit date:2017-04-04
Release date:2017-05-03
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium.
Chemistry, 24, 2018
7NBB
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BU of 7nbb by Molmil
Branched Lys48- and Lys63-linked tri-ubiquitin (K48-K63-Ub3) in complex with synthetic nanobody NbSL3
Descriptor: CHLORIDE ION, GLYCEROL, MAGNESIUM ION, ...
Authors:Lange, S.M, Kulathu, Y.
Deposit date:2021-01-26
Release date:2022-08-10
Last modified:2024-07-31
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:VCP/p97-associated proteins are binders and debranching enzymes of K48-K63-branched ubiquitin chains.
Nat.Struct.Mol.Biol., 2024
5O44
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BU of 5o44 by Molmil
Crystal structure of unbranched mixed tri-Ubiquitin chain containing K48 and K63 linkages.
Descriptor: MAGNESIUM ION, Polyubiquitin-B, SULFATE ION, ...
Authors:Padala, P, Isupov, M.N, Wiener, R.
Deposit date:2017-05-26
Release date:2017-11-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.14 Å)
Cite:The Crystal Structure and Conformations of an Unbranched Mixed Tri-Ubiquitin Chain Containing K48 and K63 Linkages.
J. Mol. Biol., 429, 2017
5NVG
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BU of 5nvg by Molmil
Thr12 Phosphorylated Ubiquitin
Descriptor: DI(HYDROXYETHYL)ETHER, PHOSPHATE ION, Polyubiquitin-B
Authors:Huguenin-Dezot, N.
Deposit date:2017-05-04
Release date:2017-05-31
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (1.07 Å)
Cite:Biosynthesis and genetic encoding of phosphothreonine through parallel selection and deep sequencing.
Nat. Methods, 14, 2017
7M4O
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BU of 7m4o by Molmil
Crystal structure of phosphorylated RBR E3 ligase RNF216 in complex with K63-linked di-ubiquitin
Descriptor: 2-(2-METHOXYETHOXY)ETHANOL, E3 ubiquitin-protein ligase RNF216, GLYCEROL, ...
Authors:Cotton, T.R, Lechtenberg, B.C.
Deposit date:2021-03-21
Release date:2022-01-05
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Structural basis of K63-ubiquitin chain formation by the Gordon-Holmes syndrome RBR E3 ubiquitin ligase RNF216.
Mol.Cell, 82, 2022
7M4M
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BU of 7m4m by Molmil
Crystal structure of RBR E3 ligase RNF216 with ubiquitin
Descriptor: E3 ubiquitin-protein ligase RNF216, GLYCEROL, Ubiquitin, ...
Authors:Cotton, T.R, Lechtenberg, B.C.
Deposit date:2021-03-21
Release date:2022-01-05
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Structural basis of K63-ubiquitin chain formation by the Gordon-Holmes syndrome RBR E3 ubiquitin ligase RNF216.
Mol.Cell, 82, 2022
7M4N
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BU of 7m4n by Molmil
Crystal structure of RBR E3 ligase RNF216 in complex with K63-linked di-ubiquitin
Descriptor: E3 ubiquitin-protein ligase RNF216, GLYCEROL, SULFATE ION, ...
Authors:Cotton, T.R, Lechtenberg, B.C.
Deposit date:2021-03-21
Release date:2022-01-05
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:Structural basis of K63-ubiquitin chain formation by the Gordon-Holmes syndrome RBR E3 ubiquitin ligase RNF216.
Mol.Cell, 82, 2022
8HM1
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BU of 8hm1 by Molmil
crystal structure of human ubiquitin-like protein from Bacteroides fragilis
Descriptor: 1,2-ETHANEDIOL, Putative ubiquitin
Authors:Tong, M, Chen, Z, Gao, X.
Deposit date:2022-12-02
Release date:2023-11-29
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:Bacteroides fragilis ubiquitin homologue drives intraspecies bacterial competition in the gut microbiome.
Nat Microbiol, 9, 2024
8HM2
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BU of 8hm2 by Molmil
Crystal structure of human ubiquitin-like protein from bacteroides fragilis c terminal cysteine mutant
Descriptor: Putative ubiquitin
Authors:Tong, M, Chen, Z, Gao, X.
Deposit date:2022-12-02
Release date:2023-11-29
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Bacteroides fragilis ubiquitin homologue drives intraspecies bacterial competition in the gut microbiome.
Nat Microbiol, 9, 2024

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