5B42
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![BU of 5b42 by Molmil](/molmil-images/mine/5b42) | Crystal structure of the C-terminal endonuclease domain of Aquifex aeolicus MutL. | Descriptor: | CADMIUM ION, DI(HYDROXYETHYL)ETHER, DNA mismatch repair protein MutL | Authors: | Fukui, K, Baba, S, Kumasaka, T, Yano, T. | Deposit date: | 2016-03-30 | Release date: | 2016-07-13 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.35 Å) | Cite: | Structural Features and Functional Dependency on beta-Clamp Define Distinct Subfamilies of Bacterial Mismatch Repair Endonuclease MutL J.Biol.Chem., 291, 2016
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8PEP
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![BU of 8pep by Molmil](/molmil-images/mine/8pep) | H3K36me2 nucleosome-LEDGF/p75 PWWP domain complex - pose 2 | Descriptor: | Histone H2A, Histone H2B 1.1, Histone H3, ... | Authors: | Koutna, E, Kouba, T, Veverka, V. | Deposit date: | 2023-06-14 | Release date: | 2023-08-16 | Last modified: | 2023-11-15 | Method: | ELECTRON MICROSCOPY (3.33 Å) | Cite: | Multivalency of nucleosome recognition by LEDGF. Nucleic Acids Res., 51, 2023
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8PEO
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![BU of 8peo by Molmil](/molmil-images/mine/8peo) | H3K36me2 nucleosome-LEDGF/p75 PWWP domain complex | Descriptor: | (2R)-2-amino-3-(2-dimethylaminoethylsulfanyl)propanoic acid, Histone H2A, Histone H2B 1.1, ... | Authors: | Koutna, E, Kouba, T, Veverka, V. | Deposit date: | 2023-06-14 | Release date: | 2023-08-16 | Last modified: | 2023-11-15 | Method: | ELECTRON MICROSCOPY (2.69 Å) | Cite: | Multivalency of nucleosome recognition by LEDGF. Nucleic Acids Res., 51, 2023
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6HZ6
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![BU of 6hz6 by Molmil](/molmil-images/mine/6hz6) | Structure of McrBC without DNA binding domains (Class 2) | Descriptor: | 5-methylcytosine-specific restriction enzyme B, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... | Authors: | Itoh, Y, Nirwan, N, Saikrishnan, K, Amunts, A. | Deposit date: | 2018-10-22 | Release date: | 2019-07-24 | Last modified: | 2024-05-15 | Method: | ELECTRON MICROSCOPY (4.3 Å) | Cite: | Structure-based mechanism for activation of the AAA+ GTPase McrB by the endonuclease McrC. Nat Commun, 10, 2019
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8Q2N
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![BU of 8q2n by Molmil](/molmil-images/mine/8q2n) | |
3Q22
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![BU of 3q22 by Molmil](/molmil-images/mine/3q22) | |
1PWF
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![BU of 1pwf by Molmil](/molmil-images/mine/1pwf) | One Sugar Pucker Fits All: Pairing Versatility Despite Conformational Uniformity in TNA | Descriptor: | 5'-D(*GP*CP*GP*TP*AP*(2MU)P*(FA2)P*CP*GP*C)-3', SPERMINE | Authors: | Pallan, P.S, Wilds, C.J, Wawrzak, Z, Krishnamurthy, R, Eschenmoser, A, Egli, M. | Deposit date: | 2003-07-01 | Release date: | 2004-07-13 | Last modified: | 2023-08-16 | Method: | X-RAY DIFFRACTION (1.16 Å) | Cite: | Why does TNA cross-pair more strongly with RNA than with DNA? an answer from X-ray analysis. ANGEW.CHEM.INT.ED.ENGL., 42, 2003
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6VWB
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![BU of 6vwb by Molmil](/molmil-images/mine/6vwb) | Solution structure of the N-terminal helix-hairpin-helix domain of human MUS81 | Descriptor: | Crossover junction endonuclease MUS81 | Authors: | Payliss, B, Houliston, S, Lemak, A, Arrowsmith, C.H, Wyatt, H.D.M. | Deposit date: | 2020-02-19 | Release date: | 2021-02-24 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Phosphorylation of the DNA repair scaffold SLX4 drives folding of the SAP domain and activation of the MUS81-EME1 endonuclease Cell Rep, 41, 2022
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5AY8
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![BU of 5ay8 by Molmil](/molmil-images/mine/5ay8) | Crystal structure of human nucleosome containing H3.Y | Descriptor: | CHLORIDE ION, DNA (146-MER), H3.Y, ... | Authors: | Kujirai, T, Horikoshi, N, Sato, K, Maehara, K, Machida, S, Osakabe, A, Kimura, H, Ohkawa, Y, Kurumizaka, H. | Deposit date: | 2015-08-10 | Release date: | 2016-04-06 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Structure and function of human histone H3.Y nucleosome Nucleic Acids Res., 44, 2016
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4B2H
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![BU of 4b2h by Molmil](/molmil-images/mine/4b2h) | COMPLEXES OF DODECIN WITH FLAVIN AND FLAVIN-LIKE LIGANDS | Descriptor: | 3-[7,8-dimethyl-2,4-bis(oxidanylidene)benzo[g]pteridin-10-yl]propylcarbamic acid, CHLORIDE ION, DODECIN, ... | Authors: | Yu, Y, Heidel, B, Parapugna, T.L, Wenderhold-Reeb, S, Song, B, Schoenherr, H, Grininger, M, Noell, G. | Deposit date: | 2012-07-16 | Release date: | 2013-05-29 | Last modified: | 2023-12-20 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | The Flavoprotein Dodecin as a Redox Probe for Electron Transfer Through DNA. Angew.Chem.Int.Ed.Engl., 52, 2013
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8D2N
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![BU of 8d2n by Molmil](/molmil-images/mine/8d2n) | Structure of Acidothermus cellulolyticus Cas9 ternary complex (Pre-cleavage) | Descriptor: | CRISPR-associated endonuclease, Csn1 family, DNA non-target strand (5'-D(P*TP*AP*CP*AP*CP*CP*AP*AP*GP*CP*T)-3'), ... | Authors: | Rai, J, Das, A, Li, H. | Deposit date: | 2022-05-30 | Release date: | 2023-12-20 | Last modified: | 2024-05-01 | Method: | ELECTRON MICROSCOPY (2.88 Å) | Cite: | Coupled catalytic states and the role of metal coordination in Cas9. Nat Catal, 6, 2023
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6HZ4
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![BU of 6hz4 by Molmil](/molmil-images/mine/6hz4) | Structure of McrBC without DNA binding domains (one half of the full complex) | Descriptor: | 5-methylcytosine-specific restriction enzyme B, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... | Authors: | Itoh, Y, Nirwan, N, Saikrishnan, K, Amunts, A. | Deposit date: | 2018-10-22 | Release date: | 2019-07-24 | Last modified: | 2024-05-15 | Method: | ELECTRON MICROSCOPY (3.6 Å) | Cite: | Structure-based mechanism for activation of the AAA+ GTPase McrB by the endonuclease McrC. Nat Commun, 10, 2019
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6HZ9
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![BU of 6hz9 by Molmil](/molmil-images/mine/6hz9) | Structure of McrBC without DNA binding domains (Class 5) | Descriptor: | 5-methylcytosine-specific restriction enzyme B, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... | Authors: | Itoh, Y, Nirwan, N, Saikrishnan, K, Amunts, A. | Deposit date: | 2018-10-22 | Release date: | 2019-07-24 | Last modified: | 2024-05-15 | Method: | ELECTRON MICROSCOPY (4.8 Å) | Cite: | Structure-based mechanism for activation of the AAA+ GTPase McrB by the endonuclease McrC. Nat Commun, 10, 2019
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8GM6
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![BU of 8gm6 by Molmil](/molmil-images/mine/8gm6) | |
8GM7
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![BU of 8gm7 by Molmil](/molmil-images/mine/8gm7) | |
6HZ7
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![BU of 6hz7 by Molmil](/molmil-images/mine/6hz7) | Structure of McrBC without DNA binding domains (Class 3) | Descriptor: | 5-methylcytosine-specific restriction enzyme B, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... | Authors: | Itoh, Y, Nirwan, N, Saikrishnan, K, Amunts, A. | Deposit date: | 2018-10-22 | Release date: | 2019-07-24 | Last modified: | 2024-05-15 | Method: | ELECTRON MICROSCOPY (4.3 Å) | Cite: | Structure-based mechanism for activation of the AAA+ GTPase McrB by the endonuclease McrC. Nat Commun, 10, 2019
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1N0K
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![BU of 1n0k by Molmil](/molmil-images/mine/1n0k) | NMR Structure of duplex DNA d(CCAAGGXCTTGGG), X is a 3' phosphoglycolate, 5'phosphate gapped lesion | Descriptor: | 2-PHOSPHOGLYCOLIC ACID, 5'-D(*CP*CP*AP*AP*GP*G)-3', 5'-D(*CP*CP*CP*AP*AP*GP*GP*CP*CP*TP*TP*GP*G)-3', ... | Authors: | Junker, H.-D, Hoehn, S.T, Bunt, R.C, Marathius, V, Chen, J, Turner, C.J, Stubbe, J. | Deposit date: | 2002-10-14 | Release date: | 2003-01-07 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Synthesis, Characterization and Solution Structure of Tethered Oligonucleotides Containing an Internal 3'-Phosphoglycolate, 5'-Phosphate Gapped Lesion Nucleic Acids Res., 30, 2002
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1QEY
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![BU of 1qey by Molmil](/molmil-images/mine/1qey) | NMR Structure Determination of the Tetramerization Domain of the MNT Repressor: An Asymmetric A-Helical Assembly in Slow Exchange | Descriptor: | PROTEIN (REGULATORY PROTEIN MNT) | Authors: | Nooren, I.M.A, George, A.V.E, Kaptein, R, Sauer, R.T, Boelens, R. | Deposit date: | 1999-04-03 | Release date: | 1999-08-18 | Last modified: | 2023-12-27 | Method: | SOLUTION NMR | Cite: | The tetramerization domain of the Mnt repressor consists of two right-handed coiled coils. Nat.Struct.Biol., 6, 1999
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6HZ5
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![BU of 6hz5 by Molmil](/molmil-images/mine/6hz5) | Structure of McrBC without DNA binding domains (Class 1) | Descriptor: | 5-methylcytosine-specific restriction enzyme B, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... | Authors: | Itoh, Y, Nirwan, N, Saikrishnan, K, Amunts, A. | Deposit date: | 2018-10-22 | Release date: | 2019-07-24 | Last modified: | 2024-05-15 | Method: | ELECTRON MICROSCOPY (4.2 Å) | Cite: | Structure-based mechanism for activation of the AAA+ GTPase McrB by the endonuclease McrC. Nat Commun, 10, 2019
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3UNN
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![BU of 3unn by Molmil](/molmil-images/mine/3unn) | |
6HZ8
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![BU of 6hz8 by Molmil](/molmil-images/mine/6hz8) | Structure of McrBC without DNA binding domains (Class 4) | Descriptor: | 5-methylcytosine-specific restriction enzyme B, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... | Authors: | Itoh, Y, Nirwan, N, Saikrishnan, K, Amunts, A. | Deposit date: | 2018-10-22 | Release date: | 2019-07-24 | Last modified: | 2024-05-15 | Method: | ELECTRON MICROSCOPY (4.3 Å) | Cite: | Structure-based mechanism for activation of the AAA+ GTPase McrB by the endonuclease McrC. Nat Commun, 10, 2019
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5DCF
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![BU of 5dcf by Molmil](/molmil-images/mine/5dcf) | C-terminal domain of XerD recombinase in complex with gamma domain of FtsK | Descriptor: | Tyrosine recombinase XerD,DNA translocase FtsK | Authors: | Keller, A.N, Xin, Y, Lowe, J, Grainge, I. | Deposit date: | 2015-08-24 | Release date: | 2016-09-07 | Last modified: | 2023-09-27 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Activation of Xer-recombination at dif: structural basis of the FtsK gamma-XerD interaction. Sci Rep, 6, 2016
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2KQ5
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![BU of 2kq5 by Molmil](/molmil-images/mine/2kq5) | |
1IN6
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![BU of 1in6 by Molmil](/molmil-images/mine/1in6) | THERMOTOGA MARITIMA RUVB K64R MUTANT | Descriptor: | ACETATE ION, ADENOSINE-5'-DIPHOSPHATE, COBALT (II) ION, ... | Authors: | Putnam, C.D, Clancy, S.B, Tsuruta, H, Wetmur, J.G, Tainer, J.A. | Deposit date: | 2001-05-12 | Release date: | 2001-08-08 | Last modified: | 2023-08-16 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Structure and mechanism of the RuvB Holliday junction branch migration motor. J.Mol.Biol., 311, 2001
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3Q23
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![BU of 3q23 by Molmil](/molmil-images/mine/3q23) | |