PDB: 223790 resultsInfo pagesStatus searchChemie searchBIRD

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8HKA	TPA bound-form of Periplasmic terephthalate binding protein (TBP) from Ideonella sakaiensis Descriptor: Periplasmic terephthalate binding protein (TBP), terephthalic acid Authors: Lee, S.H, Seo, H, Kim, K.-J. Deposit date: 2022-11-25 Release date: 2023-06-21 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.02 Å) Cite: Molecular mechanism underlying high-affinity terephthalate binding and conformational change of TBP from Ideonella sakaiensis. Int.J.Biol.Macromol., 243, 2023
8H1L	Crystal structure of glucose-2-epimerase in complex with D-Glucitol from Runella slithyformis Runsl_4512 Descriptor: N-acylglucosamine 2-epimerase, sorbitol Authors: Wang, H, Sun, X.M, Saburi, W, Yu, J, Yao, M. Deposit date: 2022-10-03 Release date: 2023-07-12 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.33 Å) Cite: Structural insights into the substrate specificity and activity of a novel mannose 2-epimerase from Runella slithyformis. Acta Crystallogr D Struct Biol, 79, 2023
8HP5	Crystal structure of (S)-2-haloacid dehalogenase Descriptor: (S)-2-haloacid dehalogenase, 1,2-ETHANEDIOL Authors: Yang, Q, Wang, L, Xu, X, Xing, X, Zhou, J. Deposit date: 2022-12-12 Release date: 2023-06-21 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Enzymatic hydrolysis on L-azetidine-2-carboxylate ring opening Catalysis Science And Technology, 2023
4ZW0	Crystal structure of beta-Hydroxyacyl-acyl carrier protein dehydratase (FabZ) from Candidatus asiaticum Descriptor: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ Authors: Wang, S, Gao, Z, Jiang, L, Dong, Y.H. Deposit date: 2015-05-19 Release date: 2015-12-16 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Beta-Hydroxyacyl-acyl Carrier Protein Dehydratase (FabZ) from Candidatus Liberibacter Asiaticum: Protein Characterization and Structural Modeling Austin J Microbiol., 1, 2015
6WRX	Crystal structure of computationally designed protein 2DS25.1 in complex with the human Transferrin receptor ectodomain Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... Authors: Abraham, J, Coscia, A, Olal, D, Sahtoe, D.D, Baker, D, Clark, L. Deposit date: 2020-04-30 Release date: 2021-04-28 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.07 Å) Cite: Transferrin receptor targeting by de novo sheet extension. Proc.Natl.Acad.Sci.USA, 118, 2021
8HF2	Cryo-EM structure of WeiTsing Descriptor: PRA1 family protein Authors: Qin, L, Tang, L.H, Chen, Y.H. Deposit date: 2022-11-09 Release date: 2023-06-21 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (4.14 Å) Cite: WeiTsing, a pericycle-expressed ion channel, safeguards the stele to confer clubroot resistance. Cell, 186, 2023
8HKB	TPA bound-form of Periplasmic terephthalate binding protein (TBP) from Ideonella sakaiensis mutant K184D Descriptor: Periplasmic terephthalate binding protein (TBP), terephthalic acid Authors: Lee, S.H, Seo, H, Kim, K.-J. Deposit date: 2022-11-25 Release date: 2023-06-21 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Molecular mechanism underlying high-affinity terephthalate binding and conformational change of TBP from Ideonella sakaiensis. Int.J.Biol.Macromol., 243, 2023
4UOE	Crystal Structure of Plasmodium Falciparum Spermidine Synthase in Complex with 5'-Deoxy-5'-Methylioadenosine and 4-Aminomethylaniline Descriptor: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, 4-(aminomethyl)aniline, 5'-DEOXY-5'-METHYLTHIOADENOSINE, ... Authors: Sprenger, J, Halander, J.C, Svensson, B, Al-Karadaghi, S, Person, L. Deposit date: 2014-06-03 Release date: 2014-10-08 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Three-Dimensional Structures of Plasmodium Falciparum Spermidine Synthase with Bound Inhibitors Suggest New Strategies for Drug Design. Acta Crystallogr.,Sect.D, 71, 2015
8HK9	Apo-form of Periplasmic terephthalate binding protein (TBP) from Ideonella sakaiensis Descriptor: GLYCEROL, Periplasmic terephthalate binding protein (TBP) Authors: Lee, S.H, Seo, H, Kim, K.-J. Deposit date: 2022-11-25 Release date: 2023-06-21 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2 Å) Cite: Molecular mechanism underlying high-affinity terephthalate binding and conformational change of TBP from Ideonella sakaiensis. Int.J.Biol.Macromol., 243, 2023
4ZXI	Crystal Structure of holo-AB3403 a four domain nonribosomal peptide synthetase bound to AMP and Glycine Descriptor: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHATE, 4'-PHOSPHOPANTETHEINE, ADENOSINE MONOPHOSPHATE, ... Authors: Drake, E.J, Miller, B.R, Allen, C.L, Gulick, A.M. Deposit date: 2015-05-20 Release date: 2015-12-30 Last modified: 2019-12-25 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structures of two distinct conformations of holo-non-ribosomal peptide synthetases. Nature, 529, 2016
8HN3	Soluble domain of cytochrome c-556 from Chlorobaculum tepidum Descriptor: ACETATE ION, Cytochrome c-556, GLYCEROL, ... Authors: Kishimoto, H, Azai, C, Yamamoto, T, Mutoh, R, Nakaniwa, T, Tanaka, H, Kurisu, G, Oh-oka, H. Deposit date: 2022-12-07 Release date: 2023-07-05 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Soluble domains of cytochrome c-556 and Rieske iron-sulfur protein from Chlorobaculum tepidum: Crystal structures and interaction analysis. Curr Res Struct Biol, 5, 2023
6WRV	Crystal structure of computationally designed protein 3DS18 in complex with the human Transferrin receptor ectodomain Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Computationally designed protein 3DS18, ... Authors: Abraham, J, Baker, D, Sahtoe, D.D, Coscia, A, Clark, L, Olal, D. Deposit date: 2020-04-30 Release date: 2021-04-28 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.47 Å) Cite: Transferrin receptor targeting by de novo sheet extension. Proc.Natl.Acad.Sci.USA, 118, 2021
8HL6	Crystal structure of human valosin-containing protein methyltransferase Descriptor: Protein N-lysine methyltransferase METTL21D, S-ADENOSYLMETHIONINE Authors: Kang, W, Yang, J.K. Deposit date: 2022-11-29 Release date: 2023-07-12 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural basis for recognition and methylation of p97 by METTL21D, a valosin-containing protein lysine methyltransferase. Iscience, 26, 2023
4ZY8	K. lactis Lst4 longin domain Descriptor: Protein LST4 Authors: Pacitto, A, Ascher, D.B, Blundell, T.L. Deposit date: 2015-05-21 Release date: 2016-04-13 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.14 Å) Cite: Lst4, the yeast Fnip1/2 orthologue, is a DENN-family protein. Open Biology, 5, 2015
6WRW	Crystal structure of computationally designed protein 2DS25.5 in complex with the human Transferrin receptor ectodomain Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Computationally designed protein 2DS25.5, ... Authors: Abraham, J, Coscia, A, Olal, D, Sahtoe, D.D, Baker, D, Clark, L. Deposit date: 2020-04-30 Release date: 2021-04-28 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.84 Å) Cite: Transferrin receptor targeting by de novo sheet extension. Proc.Natl.Acad.Sci.USA, 118, 2021
8H1K	Crystal structure of glucose-2-epimerase from Runella slithyformis Runsl_4512 Descriptor: FORMIC ACID, GLYCEROL, N-acylglucosamine 2-epimerase Authors: Wang, H, Sun, X.M, Saburi, W, Yu, J, Yao, M. Deposit date: 2022-10-03 Release date: 2023-07-12 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structural insights into the substrate specificity and activity of a novel mannose 2-epimerase from Runella slithyformis. Acta Crystallogr D Struct Biol, 79, 2023
4ZYH	Crystal structure of Sulfolobus solfataricus O6-methylguanine methyltransferase C119L variant Descriptor: Methylated-DNA--protein-cysteine methyltransferase Authors: Miggiano, R, Rossi, F, Rizzi, M. Deposit date: 2015-05-21 Release date: 2015-08-12 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structure-function relationships governing activity and stability of a DNA alkylation damage repair thermostable protein. Nucleic Acids Res., 43, 2015
8HN2	Selenomethionine-labelled soluble domain of Rieske iron-sulfur protein from chlorobaculum tepidum Descriptor: Cytochrome b6-f complex iron-sulfur subunit, FE2/S2 (INORGANIC) CLUSTER Authors: Kishimoto, H, Mutoh, R, Tanaka, H, Kurisu, G, Oh-oka, H. Deposit date: 2022-12-07 Release date: 2023-07-05 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Soluble domains of cytochrome c-556 and Rieske iron-sulfur protein from Chlorobaculum tepidum: Crystal structures and interaction analysis. Curr Res Struct Biol, 5, 2023
2M1S	NMR assignment of the arenaviral protein Z from Lassa fever virus Descriptor: RING finger protein Z, ZINC ION Authors: Volpon, L, Osborne, M.J, Borden, K.L.B. Deposit date: 2012-12-06 Release date: 2013-01-30 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structural characterization of the Z RING-eIF4E complex reveals a distinct mode of control for eIF4E Proc.Natl.Acad.Sci.USA, 107, 2010
8HH2	F1 domain of FoF1-ATPase from Bacillus PS3,post-hyd,highATP Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ... Authors: Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. Deposit date: 2022-11-16 Release date: 2023-07-19 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (3 Å) Cite: Rotation mechanism of ATP synthases driven by ATP hydrolysis To Be Published
8HL7	Crystal structure of p97 N/D1 in complex with a valosin-containing protein methyltransferase Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ACETATE ION, ADENOSINE-5'-DIPHOSPHATE, ... Authors: Kang, W, Yang, J.K. Deposit date: 2022-11-29 Release date: 2023-07-12 Last modified: 2023-08-02 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural basis for recognition and methylation of p97 by METTL21D, a valosin-containing protein lysine methyltransferase. Iscience, 26, 2023
8HHC	F1 domain of FoF1-ATPase from Bacillus PS3,post-hyd',lowATP Descriptor: ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ATP synthase subunit alpha, ... Authors: Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. Deposit date: 2022-11-16 Release date: 2023-07-19 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Rotation mechanism of ATP synthases driven by ATP hydrolysis To Be Published
8HHB	F1 domain of FoF1-ATPase from Bacillus PS3,step waiting,lowATP Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ... Authors: Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. Deposit date: 2022-11-16 Release date: 2023-07-19 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Rotation mechanism of ATP synthases driven by ATP hydrolysis To Be Published
4UME	Crystal structure of 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase from Moraxella catarrhalis in complex with Magnesium ion and KDO molecule Descriptor: 3-DEOXY-D-MANNO-OCTULOSONATE 8-PHOSPHATE PHOSPHATASE KDSC, 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid, MAGNESIUM ION Authors: Dhindwal, S, Tomar, S, Kumar, P. Deposit date: 2014-05-16 Release date: 2015-02-11 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.09 Å) Cite: Ligand-Bound Structures of 3-Deoxy-D-Manno-Octulosonate 8-Phosphate Phosphatase from Moraxella Catarrhalis Reveal a Water Channel Connecting to the Active Site for the Second Step of Catalysis Acta Crystallogr.,Sect.D, 71, 2015
8HHA	F1 domain of FoF1-ATPase from Bacillus PS3,120 degrees,lowATP Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ... Authors: Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. Deposit date: 2022-11-16 Release date: 2023-07-19 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Rotation mechanism of ATP synthases driven by ATP hydrolysis To Be Published

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