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4F7F
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Structure of Anopheles gambiae odorant binding protein 20
Descriptor: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, AGAP005208-PA, NONAETHYLENE GLYCOL
Authors:Jones, D.N, Ziemba, B.P.
Deposit date:2012-05-16
Release date:2012-10-17
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A novel mechanism of ligand binding and release in the odorant binding protein 20 from the malaria mosquito Anopheles gambiae.
Protein Sci., 22, 2013
4WDG
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BU of 4wdg by Molmil
Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, with mutation V321A, complexed with 2',5'-ADP
Descriptor: 2',3'-cyclic-nucleotide 3'-phosphodiesterase, ADENOSINE-2'-5'-DIPHOSPHATE
Authors:Myllykoski, M, Raasakka, A, Kursula, P.
Deposit date:2014-09-08
Release date:2015-09-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Determinants of ligand binding and catalytic activity in the myelin enzyme 2',3'-cyclic nucleotide 3'-phosphodiesterase.
Sci Rep, 5, 2015
8OQ6
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BU of 8oq6 by Molmil
CryoEM structure of human rho1 GABAA receptor apo state
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, DECANE, ...
Authors:Chen, F, Victor, T, John, C, Rebecca, J.H, Lindahl, E.
Deposit date:2023-04-11
Release date:2023-08-30
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (3.21 Å)
Cite:Structure and dynamics of differential ligand binding in the human rho-type GABA A receptor.
Neuron, 111, 2023
8OQ7
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BU of 8oq7 by Molmil
CryoEM structure of human rho1 GABAA receptor in complex with inhibitor TPMPA
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, DECANE, ...
Authors:Chen, F, Victor, T, John, C, Rebecca, J.H, Lindahl, E.
Deposit date:2023-04-11
Release date:2023-08-30
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:Structure and dynamics of differential ligand binding in the human rho-type GABA A receptor.
Neuron, 111, 2023
8OQA
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BU of 8oqa by Molmil
CryoEM structure of human rho1 GABAA receptor in complex with GABA and picrotoxin
Descriptor: (1aR,2aR,3S,6R,6aS,8aS,8bR,9R)-2a-hydroxy-8b-methyl-9-(prop-1-en-2-yl)hexahydro-3,6-methano-1,5,7-trioxacyclopenta[ij]c yclopropa[a]azulene-4,8(3H)-dione, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ...
Authors:Chen, F, Victor, T, John, C, Rebecca, J.H, Lindahl, E.
Deposit date:2023-04-11
Release date:2023-08-30
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structure and dynamics of differential ligand binding in the human rho-type GABA A receptor.
Neuron, 111, 2023
8OQ8
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BU of 8oq8 by Molmil
CryoEM structure of human rho1 GABAA receptor in complex with pore blocker picrotoxin
Descriptor: (1aR,2aR,3S,6R,6aS,8aS,8bR,9R)-2a-hydroxy-8b-methyl-9-(prop-1-en-2-yl)hexahydro-3,6-methano-1,5,7-trioxacyclopenta[ij]c yclopropa[a]azulene-4,8(3H)-dione, 2-acetamido-2-deoxy-beta-D-glucopyranose, DECANE, ...
Authors:Chen, F, Victor, T, John, C, Rebecca, J.H, Lindahl, E.
Deposit date:2023-04-11
Release date:2023-08-30
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structure and dynamics of differential ligand binding in the human rho-type GABA A receptor.
Neuron, 111, 2023
6U30
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BU of 6u30 by Molmil
The crystal structure of 4-pyridin-3-ylbenzoate-bound CYP199A4
Descriptor: 4-(pyridin-3-yl)benzoic acid, ACETATE ION, CHLORIDE ION, ...
Authors:Podgorski, M.N, Bruning, J.B, Bell, S.G.
Deposit date:2019-08-21
Release date:2020-02-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.655 Å)
Cite:Biophysical Techniques for Distinguishing Ligand Binding Modes in Cytochrome P450 Monooxygenases.
Biochemistry, 59, 2020
8OP9
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BU of 8op9 by Molmil
CryoEM structure of human rho1 GABAA receptor in complex with GABA
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, GAMMA-AMINO-BUTANOIC ACID, ...
Authors:Chen, F, Victor, T, John, C, Rebecca, J.H, Lindahl, E.
Deposit date:2023-04-06
Release date:2023-08-30
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (3.36 Å)
Cite:Structure and dynamics of differential ligand binding in the human rho-type GABA A receptor.
Neuron, 111, 2023
5E6P
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BU of 5e6p by Molmil
PlexinB2 cytoplasmic region/PDZ-RhoGEF PDZ domain complex
Descriptor: Plexin-B2, Rho guanine nucleotide exchange factor 11
Authors:Pascoe, H.G, Zhang, X.
Deposit date:2015-10-10
Release date:2015-11-18
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.215 Å)
Cite:Secondary PDZ domain-binding site on class B plexins enhances the affinity for PDZ-RhoGEF.
Proc.Natl.Acad.Sci.USA, 112, 2015
7C7M
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BU of 7c7m by Molmil
The structure of SAM-bound CntL, an aminobutyrate transferase in staphylopine biosysnthesis
Descriptor: 1,2-ETHANEDIOL, S-ADENOSYLMETHIONINE, Staphylopine biosynthesis enzyme CntL
Authors:Luo, Z, Luo, S, Zhou, H.
Deposit date:2020-05-26
Release date:2021-04-28
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Structural insights into the ligand recognition and catalysis of the key aminobutanoyltransferase CntL in staphylopine biosynthesis.
Faseb J., 35, 2021
7C9M
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BU of 7c9m by Molmil
The structure of product-bound CntL, an aminobutyrate transferase in staphylopine biosynthesis
Descriptor: (2S)-2-azanyl-4-[[(2R)-3-(1H-imidazol-4-yl)-1-oxidanyl-1-oxidanylidene-propan-2-yl]amino]butanoic acid, 5'-DEOXY-5'-METHYLTHIOADENOSINE, D-histidine 2-aminobutanoyltransferase
Authors:Luo, Z, Zhou, H.
Deposit date:2020-06-06
Release date:2021-04-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural insights into the ligand recognition and catalysis of the key aminobutanoyltransferase CntL in staphylopine biosynthesis.
Faseb J., 35, 2021
1WKC
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BU of 1wkc by Molmil
Crystal structure of a 5-formyltetrahydrofolate cycloligase-related protein from Thermus thermophilus HB8
Descriptor: HB8 TT1367 protein, SULFATE ION
Authors:Yanai, H, Tsuge, H, Utsunomiya, H, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-31
Release date:2004-12-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of a 5-formyltetrahydrofolate cycloligase-related protein from Thermus thermophilus HB8
To be Published
7RMU
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BU of 7rmu by Molmil
Structure of Thermomonospora curvata heme-containing DyP-type peroxidase with a modified axial ligand
Descriptor: DyP-type Peroxidase, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
Authors:Khadka, S, Li, P, Geisbrecht, B.V.
Deposit date:2021-07-28
Release date:2022-08-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of Thermomonospora curvata heme-containing DyP-type peroxidase with a modified axial ligand
To Be Published
4XCP
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BU of 4xcp by Molmil
Fatty Acid and Retinol binding protein Na-FAR-1 from Necator americanus
Descriptor: Nematode fatty acid retinoid binding protein, PALMITIC ACID
Authors:Gabrielsen, M, Rey-Burusco, M.F, Ibanez-Shimabukuro, M, Griffiths, K, Kennedy, M.W, Corsico, B, Smith, B.O.
Deposit date:2014-12-18
Release date:2015-09-16
Last modified:2017-08-30
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Diversity in the structures and ligand-binding sites of nematode fatty acid and retinol-binding proteins revealed by Na-FAR-1 from Necator americanus.
Biochem.J., 471, 2015
4WDD
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BU of 4wdd by Molmil
Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, with mutation T232A, complexed with citrate
Descriptor: 2',3'-cyclic-nucleotide 3'-phosphodiesterase, CHLORIDE ION, CITRIC ACID, ...
Authors:Myllykoski, M, Raasakka, A, Kursula, P.
Deposit date:2014-09-08
Release date:2015-09-30
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.101 Å)
Cite:Determinants of ligand binding and catalytic activity in the myelin enzyme 2',3'-cyclic nucleotide 3'-phosphodiesterase.
Sci Rep, 5, 2015
7R62
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BU of 7r62 by Molmil
Estrogen Receptor Alpha Ligand Binding Domain in Complex with a Desmethyl ICI164,384 Derivative
Descriptor: 11-[3,17beta-dihydroxyestra-1,3,5(10)-trien-7beta-yl]-N-methyl-N-propylundecanamide, Estrogen receptor
Authors:Diennet, M, El Ezzy, M, Thiombane, K, Cotnoir-White, D, Poupart, J, Gao, Z, Mendoza Sanchez, R, Marinier, A, Gleason, J, Greene, G.L, Mader, S.C, Fanning, S.W.
Deposit date:2021-06-22
Release date:2022-07-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Estrogen Receptor Alpha Ligand Binding Domain in Complex with a Desmethyl ICI164,384 Derivative
To Be Published
7RCH
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BU of 7rch by Molmil
Crystal structure of NS1-ED of Vietnam influenza A virus in complex with the p85-beta-iSH2 domain of human PI3K
Descriptor: Non-structural protein 1, Phosphatidylinositol 3-kinase regulatory subunit beta
Authors:Kim, I, Zhao, B, Li, P, Cho, J.H.
Deposit date:2021-07-07
Release date:2022-07-13
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Energy landscape reshaped by strain-specific mutations underlies epistasis in NS1 evolution of influenza A virus.
Nat Commun, 13, 2022
5DSH
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BU of 5dsh by Molmil
Human PPARgamma ligand binding dmain complexed with SB1406 in a covalent bonded form
Descriptor: N-[3-(benzyloxy)phenyl]-3-nitrobenzamide, Nuclear receptor coactivator 1, Peroxisome proliferator-activated receptor gamma
Authors:Jang, J.Y.
Deposit date:2015-09-17
Release date:2016-09-21
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Human PPARgamma ligand binding dmain complexed with SB1406 in a covalent bonded form
To Be Published
4WDH
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BU of 4wdh by Molmil
Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, with mutation Y168A
Descriptor: 2',3'-cyclic-nucleotide 3'-phosphodiesterase, ACETIC ACID, CHLORIDE ION
Authors:Myllykoski, M, Raasakka, A, Kursula, P.
Deposit date:2014-09-08
Release date:2015-09-30
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Determinants of ligand binding and catalytic activity in the myelin enzyme 2',3'-cyclic nucleotide 3'-phosphodiesterase.
Sci Rep, 5, 2015
5DVC
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BU of 5dvc by Molmil
Human PPARgamma ligand binding dmain complexed with SB1453 in a covalent bonded form
Descriptor: N-[2-({3-[({4-[(4-methylpiperazin-1-yl)methyl]benzoyl}amino)methyl]benzyl}oxy)phenyl]-3-nitrobenzamide, Nuclear receptor coactivator 1, Peroxisome proliferator-activated receptor gamma
Authors:Jang, J.Y.
Deposit date:2015-09-21
Release date:2016-09-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Human PPARgamma ligand binding dmain complexed with SB1453 in a covalent bonded form
To Be Published
6ZX9
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BU of 6zx9 by Molmil
Crystal structure of SIV Vpr,fused to T4 lysozyme, isolated from moustached monkey, bound to human DDB1 and human DCAF1 (amino acid residues 1046-1396)
Descriptor: DDB1- and CUL4-associated factor 1, DNA damage-binding protein 1, GLYCEROL, ...
Authors:Schwefel, D, Banchenko, S.
Deposit date:2020-07-29
Release date:2021-07-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.519729 Å)
Cite:Structural insights into Cullin4-RING ubiquitin ligase remodelling by Vpr from simian immunodeficiency viruses.
Plos Pathog., 17, 2021
6ZUE
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BU of 6zue by Molmil
Crystal structure of human DDB1 bound to human DCAF1 (amino acid residues 1046-1396)
Descriptor: DDB1- and CUL4-associated factor 1, DNA damage-binding protein 1
Authors:Schwefel, D, Taylor, I.A.
Deposit date:2020-07-22
Release date:2021-07-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.094 Å)
Cite:Structural insights into Cullin4-RING ubiquitin ligase remodelling by Vpr from simian immunodeficiency viruses.
Plos Pathog., 17, 2021
8OKX
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BU of 8okx by Molmil
Structure of cGAS in complex with SPSB3-ELOBC
Descriptor: Cyclic GMP-AMP synthase, Elongin-B, Elongin-C, ...
Authors:Xu, P.B, Ablasser, A.
Deposit date:2023-03-29
Release date:2024-02-14
Last modified:2024-04-10
Method:ELECTRON MICROSCOPY (3.51 Å)
Cite:The CRL5-SPSB3 ubiquitin ligase targets nuclear cGAS for degradation.
Nature, 627, 2024
4WBI
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BU of 4wbi by Molmil
Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, with mutations H230Q and H309Q
Descriptor: 2',3'-cyclic-nucleotide 3'-phosphodiesterase
Authors:Myllykoski, M, Raasakka, A, Kursula, P.
Deposit date:2014-09-03
Release date:2015-09-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Determinants of ligand binding and catalytic activity in the myelin enzyme 2',3'-cyclic nucleotide 3'-phosphodiesterase.
Sci Rep, 5, 2015
8OL1
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BU of 8ol1 by Molmil
cGAS-Nucleosome in complex with SPSB3-ELOBC (composite structure)
Descriptor: Cyclic GMP-AMP synthase, DNA (145-MER), Elongin-B, ...
Authors:Xu, P.B, Ablasser, A.
Deposit date:2023-03-29
Release date:2024-02-14
Last modified:2024-04-10
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:The CRL5-SPSB3 ubiquitin ligase targets nuclear cGAS for degradation.
Nature, 627, 2024

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