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1ZMN
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BU of 1zmn by Molmil
Crystal Structure of the Catalytic Domain of Coagulation Factor XI in Complex with (R)-1-(4-(4-(hydroxymethyl)-1,3,2-dioxaborolan-2-yl)phenyl)guanidine
Descriptor: (R)-1-(4-(4-(HYDROXYMETHYL)-1,3,2-DIOXABOROLAN-2-YL)PHENYL)GUANIDINE, Coagulation factor XI, SULFATE ION
Authors:Lazarova, T.I, Jin, L, Rynkiewicz, M.J, Gorga, J.C, Bibbins, F, Meyers, H.V, Babine, R.E, Strickler, J.E.
Deposit date:2005-05-10
Release date:2006-05-09
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Synthesis and in vitro biological evaluation of aryl boronic acids as potential inhibitors of factor XIa.
Bioorg.Med.Chem.Lett., 16, 2006
9FWI
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BU of 9fwi by Molmil
Ensemble model of ligand-free SARS-CoV-2 NSP10-NSP14 (ExoN) and in complex with partially bound VT00025
Descriptor: (3-oxidanylazetidin-1-yl)-phenyl-methanone, DIMETHYL SULFOXIDE, Guanine-N7 methyltransferase nsp14, ...
Authors:Krojer, T, Kozielski, F, Sele, C, Nyblom, M, Fisher, S.Z, Knecht, W.
Deposit date:2024-06-30
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.533 Å)
Cite:Ensemble model of ligand-free SARS-CoV-2 NSP10-NSP14 (ExoN) and in complex with partially bound VT00025
To Be Published
7D22
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BU of 7d22 by Molmil
Hsp90 alpha N-terminal domain in complex with a 6B compund
Descriptor: 9-[(3-tert-butyl-1,2-oxazol-5-yl)methyl]-6-chloranyl-purin-2-amine, Heat shock protein HSP 90-alpha
Authors:Shin, S.C, Kim, E.E.
Deposit date:2020-09-15
Release date:2021-07-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural Basis for Design of New Purine-Based Inhibitors Targeting the Hydrophobic Binding Pocket of Hsp90.
Int J Mol Sci, 21, 2020
4XP2
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BU of 4xp2 by Molmil
Crystal structure of ERK2 in complex with an inhibitor
Descriptor: 1-phenyl-1H-1,2,4-triazole-3,5-diamine, DIMETHYL SULFOXIDE, Mitogen-activated protein kinase 1, ...
Authors:Gelin, M, Allemand, F, Labesse, G, Guichou, J.F.
Deposit date:2015-01-16
Release date:2015-08-12
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.748 Å)
Cite:Combining `dry' co-crystallization and in situ diffraction to facilitate ligand screening by X-ray crystallography.
Acta Crystallogr.,Sect.D, 71, 2015
7D1V
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BU of 7d1v by Molmil
Hsp90 alpha N-terminal domain in complex with a 6C compund
Descriptor: 6-chloranyl-9-[(3-propan-2-yl-1,2-oxazol-5-yl)methyl]purin-2-amine, Heat shock protein HSP 90-alpha
Authors:Shin, S.C, Kim, E.E.
Deposit date:2020-09-15
Release date:2021-07-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.332 Å)
Cite:Structural Basis for Design of New Purine-Based Inhibitors Targeting the Hydrophobic Binding Pocket of Hsp90.
Int J Mol Sci, 21, 2020
4XTX
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BU of 4xtx by Molmil
Mycobacterium tuberculosis biotin ligase complexed with bisubstrate inhibitor 57 with azide in place of ribose 2'OH
Descriptor: 1,2-ETHANEDIOL, 9-[2-azido-2-deoxy-5-O-({5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}sulfamoyl)-beta-D-arabinofuranosyl]-9H-purin-6-amine, Bifunctional ligase/repressor BirA
Authors:De la Mora-Rey, T, Finzel, B.C.
Deposit date:2015-01-24
Release date:2015-09-02
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.30010319 Å)
Cite:Targeting Mycobacterium tuberculosis Biotin Protein Ligase (MtBPL) with Nucleoside-Based Bisubstrate Adenylation Inhibitors.
J.Med.Chem., 58, 2015
9FVI
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BU of 9fvi by Molmil
Crystal structure of 14-3-3 sigma in complex with Tau pS214 peptide and covalent stabilizer JS18
Descriptor: 1-(3-bromanyl-4-methyl-phenyl)-2-(3-methylphenyl)imidazole, 14-3-3 protein sigma, Microtubule-associated protein tau
Authors:van den Oetelaar, M.C.M, Scheele, J.J.A, Ottmann, C, Brunsveld, L.
Deposit date:2024-06-27
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Site-selective stabilization of the 14-3-3/tau protein-protein interaction
To Be Published
6Q10
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BU of 6q10 by Molmil
Crystal structure of the soluble domain (residues 71-217) of a conserved hypothetical secreted protein (Rv2700 ortholog) from Mycobacterium marinum
Descriptor: 1,2-ETHANEDIOL, MymaA.19257.a.B3
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2019-08-02
Release date:2019-08-14
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:SSGCID, Mycobacerium marinum, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, secreted protein, Rv2700 ortholog
to be published
8WHI
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BU of 8whi by Molmil
Crystal structure of native CLASP2 in complex with CLIP170
Descriptor: 1,2-ETHANEDIOL, CLIP-associating protein 2, CLIP1 protein, ...
Authors:Jin, G, Wei, Z.
Deposit date:2023-09-23
Release date:2024-08-28
Method:X-RAY DIFFRACTION (1.853 Å)
Cite:CLASP-mediated competitive binding in protein condensates directs microtubule growth.
Nat Commun, 15, 2024
4B95
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BU of 4b95 by Molmil
pVHL-EloB-EloB-EloC complex_(2S,4R)-1-(2-chlorophenyl)carbonyl-N-[(4-chlorophenyl)methyl]-4-oxidanyl-pyrrolidine-2-carboxamide bound
Descriptor: (2S,4R)-1-(2-chlorophenyl)carbonyl-N-[(4-chlorophenyl)methyl]-4-oxidanyl-pyrrolidine-2-carboxamide, ACETATE ION, TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1, ...
Authors:Buckley, D.L, Gustafson, J.L, VanMolle, I, Roth, A.G, SeopTae, H, Gareiss, P.C, Jorgensen, W.L, Ciulli, A, Crews, C.M.
Deposit date:2012-08-31
Release date:2012-10-24
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Small-Molecule Inhibitors of the Interaction between the E3 Ligase Vhl and Hif1Alpha
Angew.Chem.Int.Ed.Engl., 51, 2012
6Q3P
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BU of 6q3p by Molmil
Atomic resolution crystal structure of an AAB collagen heterotrimer
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Leading Chain of the AAB Collagen Heterotrimer, ...
Authors:Jalan, A.A, Hartgerink, J.D, Brear, P, Leitinger, B, Farndale, R.W.
Deposit date:2018-12-04
Release date:2019-12-18
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.03 Å)
Cite:Atomic resolution crystal structure of an AAB collagen heterotrimer
Nat.Chem.Biol., 2019
4XG7
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BU of 4xg7 by Molmil
Crystal structure of an inhibitor-bound Syk
Descriptor: 1-[(3-methyl-1-{2-[(1-methyl-1H-indazol-5-yl)amino]pyrimidin-4-yl}-1H-pyrazol-4-yl)methyl]azetidin-3-ol, Tyrosine-protein kinase SYK
Authors:Lee, S.J, Choi, J, Han, B.G, Song, H, Koh, J.S, Lee, B.I.
Deposit date:2014-12-30
Release date:2015-12-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Crystal structures of spleen tyrosine kinase in complex with novel inhibitors: structural insights for design of anticancer drugs
Febs J., 283, 2016
4XG6
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BU of 4xg6 by Molmil
Crystal structure of an inhibitor-bound Syk
Descriptor: 1-[(1-{2-[(3,5-dimethylphenyl)amino]pyrimidin-4-yl}-3-methyl-1H-pyrazol-4-yl)methyl]azetidin-3-ol, Tyrosine-protein kinase SYK
Authors:Lee, S.J, Choi, J, Han, B.G, Song, H, Koh, J.S, Lee, B.I.
Deposit date:2014-12-30
Release date:2015-12-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structures of spleen tyrosine kinase in complex with novel inhibitors: structural insights for design of anticancer drugs
Febs J., 283, 2016
5W8Y
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BU of 5w8y by Molmil
Solution Structure of XPH1, a Hybrid Sequence of Xfaso 1 and Pfl 6, Two Cro Proteins With Different Folds
Descriptor: protein XPH1
Authors:Kumirov, V.K, Dykstra, E.M, Cordes, M.H.
Deposit date:2017-06-22
Release date:2018-07-11
Last modified:2024-10-16
Method:SOLUTION NMR
Cite:Multistep mutational transformation of a protein fold through structural intermediates.
Protein Sci., 27, 2018
7D9P
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BU of 7d9p by Molmil
Crystal Structure of Recombinant Human Acetylcholinesterase in Complex with Compound 12
Descriptor: (2S)-2-[[4-fluoranyl-1-[(2-fluorophenyl)methyl]piperidin-4-yl]methyl]-5,6-dimethoxy-2,3-dihydroinden-1-one, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Acetylcholinesterase
Authors:Liu, Q.F, Yin, W.C.
Deposit date:2020-10-14
Release date:2021-08-25
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Kinetics-Driven Drug Design Strategy for Next-Generation Acetylcholinesterase Inhibitors to Clinical Candidate.
J.Med.Chem., 64, 2021
6T1Z
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BU of 6t1z by Molmil
LmrP from L. lactis, in an outward-open conformation, bound to Hoechst 33342
Descriptor: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHATE, 2'-(4-ETHOXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DODECYL-ALPHA-D-MALTOSIDE, ...
Authors:Hutchin, A, Debruycker, V, Masureel, M, Legrand, P, Remaut, H, Govaerts, C.
Deposit date:2019-10-07
Release date:2020-07-29
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:An embedded lipid in the multidrug transporter LmrP suggests a mechanism for polyspecificity.
Nat.Struct.Mol.Biol., 27, 2020
4M0M
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BU of 4m0m by Molmil
The crystal structure of a functionally unknown protein lpg2422 from Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Descriptor: PHOSPHATE ION, Putative uncharacterized protein, TETRAETHYLENE GLYCOL
Authors:Tan, K, Li, H, Clancy, S, Shuman, H, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2013-08-01
Release date:2013-08-21
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.192 Å)
Cite:The crystal structure of a functionally unknown protein lpg2422 from Legionella pneumophila subsp. pneumophila str. Philadelphia 1
To be Published
6D6L
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BU of 6d6l by Molmil
The structure of ligand binding domain of LasR in complex with TP-1 homolog, compound 14
Descriptor: 2,4-dibromo-6-{[(2-nitrobenzene-1-carbonyl)amino]methyl}phenyl 4-chlorobenzoate, Transcriptional activator protein LasR
Authors:Dong, S.H, Nair, S.K.
Deposit date:2018-04-21
Release date:2018-08-08
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Structural and Biochemical Studies of Non-native Agonists of the LasR Quorum-Sensing Receptor Reveal an L3 Loop "Out" Conformation for LasR.
Cell Chem Biol, 25, 2018
7DAH
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BU of 7dah by Molmil
Adenosine triphosphate phosphoribosyltransferase from Vibrio cholerae in complex with ATP and PRPP
Descriptor: 1,2-ETHANEDIOL, 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Pal, R.K, Gourinath, S, Biswal, B.K.
Deposit date:2020-10-16
Release date:2021-10-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.92 Å)
Cite:Adenosine triphosphate phosphoribosyltransferase from Vibrio cholerae in complex with ATP and PRPP
To Be Published
9HCM
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BU of 9hcm by Molmil
Crystal structure of human TRF1 TRFH domain in complex with compound 45
Descriptor: 1,2-ETHANEDIOL, 1-[4-(trifluoromethyloxy)phenyl]thiourea, CALCIUM ION, ...
Authors:Casale, G, Le Bihan, Y.-V, Van Montfort, R.L.M, Guettler, S.
Deposit date:2024-11-11
Release date:2025-11-19
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Discovery of first-in-class inhibitors of the TRF1-TIN2 protein-protein interaction by fragment screening
To Be Published
9HCS
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BU of 9hcs by Molmil
Crystal structure of human TRF1 TRFH domain in complex with compound 49
Descriptor: 1,2-ETHANEDIOL, DIMETHYL SULFOXIDE, N-ethyl-N'-(5-methyl-1,2-oxazol-3-yl)urea, ...
Authors:Casale, G, Le Bihan, Y.-V, Van Montfort, R.L.M, Guettler, S.
Deposit date:2024-11-11
Release date:2025-11-19
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Discovery of first-in-class inhibitors of the TRF1-TIN2 protein-protein interaction by fragment screening
To Be Published
9HCU
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BU of 9hcu by Molmil
Crystal structure of human TRF1 TRFH domain in complex with compound 51
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, N-(4-fluorophenyl)-2-(piperazin-1-yl)acetamide, ...
Authors:Casale, G, Le Bihan, Y.-V, van Montfort, R.L.M, Guettler, S.
Deposit date:2024-11-11
Release date:2025-11-19
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Discovery of first-in-class inhibitors of the TRF1-TIN2 protein-protein interaction by fragment screening
To Be Published
9HCX
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BU of 9hcx by Molmil
Crystal structure of human TRF1 TRFH domain in complex with compound 53
Descriptor: 1,2-ETHANEDIOL, 1-(3,4,5-trimethoxyphenyl)methanamine, CALCIUM ION, ...
Authors:Casale, G, Le Bihan, Y.-V, van Montfort, R.L.M, Guettler, S.
Deposit date:2024-11-11
Release date:2025-11-19
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Discovery of first-in-class inhibitors of the TRF1-TIN2 protein-protein interaction by fragment screening
To Be Published
4M1C
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BU of 4m1c by Molmil
Crystal Structure Analysis of Fab-Bound Human Insulin Degrading Enzyme (IDE) in Complex with Amyloid-Beta (1-40)
Descriptor: Amyloid beta A4 protein, Fab-bound IDE, heavy chain, ...
Authors:McCord, L.M, Liang, W, Farcasanu, M, Scherpelz, K, Meredith, S.C, Koide, S, Tang, W.J.
Deposit date:2013-08-02
Release date:2014-08-06
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (3.5007 Å)
Cite:Crystal Structure Analysis of Fab-Bound Human Insulin Degrading Enzyme (IDE) in Complex with Amyloid-Beta (1-40)
To be Published
3HGN
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BU of 3hgn by Molmil
Structure of porcine pancreatic elastase complexed with a potent peptidyl inhibitor FR130180 determined by neutron crystallography
Descriptor: 4-[[(2S)-3-methyl-1-oxo-1-[(2S)-2-[[(3S)-1,1,1-trifluoro-4-methyl-2-oxo-pentan-3-yl]carbamoyl]pyrrolidin-1-yl]butan-2-yl]carbamoyl]benzoic acid, CALCIUM ION, Elastase-1, ...
Authors:Tamada, T, Kinoshita, T, Kuroki, R, Tada, T.
Deposit date:2009-05-14
Release date:2009-07-28
Last modified:2024-10-30
Method:NEUTRON DIFFRACTION (1.65 Å), X-RAY DIFFRACTION
Cite:Combined High-Resolution Neutron and X-ray Analysis of Inhibited Elastase Confirms the Active-Site Oxyanion Hole but Rules against a Low-Barrier Hydrogen Bond
J.Am.Chem.Soc., 131, 2009

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