Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9NYO
DownloadVisualize
BU of 9nyo by Molmil
Clostridium acetobutylicum alcohol dehydrogenase bound to NADP+, disordered nicotinamide
Descriptor: 1,2-ETHANEDIOL, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Oxidoreductase
Authors:Madzelan, P, Wilson, M.A.
Deposit date:2025-03-28
Release date:2025-07-02
Last modified:2025-09-10
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Is a Malleable Active Site Loop the Key to High Substrate Promiscuity? Hybrid, Biocatalytic Route to Structurally Diverse Taxoid Side Chains with Remarkable Dual Stereocontrol.
Angew.Chem.Int.Ed.Engl., 64, 2025
5VTA
DownloadVisualize
BU of 5vta by Molmil
Co-Crystal Structure of DPPIV with a Chemibody Inhibitor
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-{4-[(3R)-3-amino-4-(2,4,5-trifluorophenyl)butanoyl]piperazin-1-yl}-N-(22-oxo-3,6,9,12,15,18-hexaoxa-21-azatricosan-1-yl)acetamide, ...
Authors:Wang, Z, Johnstone, S, Cheng, A.
Deposit date:2017-05-16
Release date:2018-05-09
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure-guided Discovery of Dual-recognition Chemibodies.
Sci Rep, 8, 2018
9RM4
DownloadVisualize
BU of 9rm4 by Molmil
Crystal Structure of ZIKV NS2B-NS3 protease in complex with ASAP-0015373
Descriptor: SODIUM ION, Serine protease subunit NS2B,Serine protease NS3, ~{N}-[3-chloranyl-5-[(2-methyl-1-oxidanyl-propan-2-yl)carbamoyl]phenyl]-5-[(dimethylamino)methyl]-1~{H}-pyrrole-2-carboxamide
Authors:Ni, X, Marples, P.G, Godoy, A.S, Koekemoer, L, Aschenbrenner, J.C, Balcomb, B.H, Fairhead, M, Lithgo, R.M, Lee, A, Kenton, N, Thompson, W, Tomlinson, C.W.E, Wild, C, Winokan, M, Williams, E.P, Fearon, D, von Delft, F.
Deposit date:2025-06-17
Release date:2025-07-23
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal Structure of ZIKV NS2B-NS3 protease in complex with ASAP-0015373
To Be Published
9NIM
DownloadVisualize
BU of 9nim by Molmil
Structure of a K1305A mutant of the acyltransferase domain of NcdE, a multi-domain NRPS protein from nocardichelin biosynthesis
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, NcdE
Authors:Fisk, M.B, Gulick, A.M, Barrera Ramirez, J.
Deposit date:2025-02-26
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Identification and Characterization of the Biosynthesis of the Hybrid NRPS-NIS Siderophore Nocardichelin.
Acs Chem.Biol., 20, 2025
9QVL
DownloadVisualize
BU of 9qvl by Molmil
Crystal structure of the CtaG_C11A variant from Ruminiclostridium cellulolyticum (P2(1)2(1)2(1)-small)
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Butirosin biosynthesis protein H N-terminal domain-containing protein, IMIDAZOLE, ...
Authors:Gude, F, Bohne, A, Dell, M, Franke, J, Dunbar, K.L, Groll, M, Hertweck, C.
Deposit date:2025-04-11
Release date:2025-10-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Distal peptide elongation by a protease-like ligase and two distinct carrier proteins
Chem, 2025
6UZR
DownloadVisualize
BU of 6uzr by Molmil
Crystal structure of GLUN1/GLUN2A ligand-binding domain in complex with glycine and homoquinolinic acid
Descriptor: 3-(carboxymethyl)pyridine-2-carboxylic acid, GLYCEROL, GLYCINE, ...
Authors:Wang, J.X, Furukawa, H.
Deposit date:2019-11-15
Release date:2020-01-29
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Structural basis of subtype-selective competitive antagonism for GluN2C/2D-containing NMDA receptors.
Nat Commun, 11, 2020
6XTW
DownloadVisualize
BU of 6xtw by Molmil
HumRadA33F in complex with peptidic inhibitor 6
Descriptor: DNA repair and recombination protein RadA, SULFATE ION, ~{N}-[2-[(2~{S})-2-[[(1~{S})-1-(4-methoxyphenyl)ethyl]carbamoyl]pyrrolidin-1-yl]-2-oxidanylidene-ethyl]quinoline-2-carboxamide
Authors:Fischer, G, Marsh, M.E, Scott, D.E, Coyne, A.G, Skidmore, J, Abell, C, Hyvonen, M.
Deposit date:2020-01-16
Release date:2021-01-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:A small-molecule inhibitor of the BRCA2-RAD51 interaction modulates RAD51 assembly and potentiates DNA damage-induced cell death.
Cell Chem Biol, 28, 2021
5IF7
DownloadVisualize
BU of 5if7 by Molmil
Crystal structure of polymerase acid protein (PA) from Influenza A virus, WILSON-SMITH/1933 (H1N1) bound to fragment hit EBSI-279 N-[(4-chlorophenyl)methyl]-1-methyl-1H-pyrazolo[3,4-d]pyrimidin-4-amine
Descriptor: DIMETHYL SULFOXIDE, N-[(4-chlorophenyl)methyl]-1-methyl-1H-pyrazolo[3,4-d]pyrimidin-4-amine, Polymerase acidic protein
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2016-02-25
Release date:2017-02-22
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Fragment screening by STD NMR identifies novel site binders against influenza A virus polymerase PA
To Be Published
8VA3
DownloadVisualize
BU of 8va3 by Molmil
Crystal structure of CapGH3b enzyme retrieved from capybara gut metagenome
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Martins, M.P, Morais, M.A.B, Chinaglia, M, Mandelli, F, Lima, E.A, Murakami, M.T.
Deposit date:2023-12-11
Release date:2024-10-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A functionally augmented carbohydrate utilization locus from herbivore gut microbiota fueled by dietary beta-glucans.
NPJ Biofilms Microbiomes, 10, 2024
5IIS
DownloadVisualize
BU of 5iis by Molmil
Design, synthesis and structure activity relationship of potent pan-PIM kinase inhibitors derived from the pyridyl-amide scaffold
Descriptor: 3-amino-N-(2'-amino-6'-methyl[4,4'-bipyridin]-3-yl)-6-(2-fluorophenyl)pyridine-2-carboxamide, DI(HYDROXYETHYL)ETHER, Serine/threonine-protein kinase pim-1
Authors:Bellamacina, C, Bussiere, D, Burger, M.
Deposit date:2016-03-01
Release date:2016-04-06
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Design, synthesis and structure activity relationship of potent pan-PIM kinase inhibitors derived from the pyridyl carboxamide scaffold.
Bioorg.Med.Chem.Lett., 26, 2016
7PSF
DownloadVisualize
BU of 7psf by Molmil
Crystal Structure of a Class D Carbapenemase Complexed with Imipenem
Descriptor: 1-BUTANOL, BROMIDE ION, Beta-lactamase, ...
Authors:Zhou, Q, He, Y, Jin, Y.
Deposit date:2021-09-23
Release date:2022-10-05
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:An Ion-Pair Induced Intermediate Complex Captured in Class D Carbapenemase Reveals Chloride Ion as a Janus Effector Modulating Activity
Acs Cent.Sci., 2023
9P4S
DownloadVisualize
BU of 9p4s by Molmil
HmuS heme dechelatase: disordered domain 1, heme free.
Descriptor: HmuS heme dechelatase, SODIUM ION
Authors:Gauvin, C.C, Nath, A.K, Rodrigues da Silva, R, Akpoto, E, Dubois, J.L, Lawrence, C.M.
Deposit date:2025-06-17
Release date:2025-09-24
Method:ELECTRON MICROSCOPY (2.55 Å)
Cite:HmuS Heme Dechelatase: Disordered Domain 1, Heme Free
To Be Published
9Q4D
DownloadVisualize
BU of 9q4d by Molmil
A DARPin fused to the double trigger 1TEL variant crystallization chaperone via a direct helical fusion
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, POTASSIUM ION, ...
Authors:Averret, J.C, Bradford, M.J, Wilson, E.W, Averret, B.J, Anderson, E, Doukov, T, Moody, J.D.
Deposit date:2025-08-20
Release date:2025-10-01
Method:X-RAY DIFFRACTION (1.302 Å)
Cite:Opening Doors in Protein Crystallization: TELSAM Fusions with Two pH Triggers
To Be Published
6CY1
DownloadVisualize
BU of 6cy1 by Molmil
Crystal structure of Signal recognition particle receptor FtsY from Elizabethkingia anophelis
Descriptor: 1,2-ETHANEDIOL, SULFATE ION, Signal recognition particle receptor FtsY
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2018-04-04
Release date:2018-05-02
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of Signal recognition particle receptor FtsY from Elizabethkingia anophelis
to be published
8TS5
DownloadVisualize
BU of 8ts5 by Molmil
Structure of the apo FabS1C_C1
Descriptor: 1,2-ETHANEDIOL, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ...
Authors:Singer, A.U, Bruce, H.A, Blazer, L.L, Adams, J.J, Sicheri, F, Sidhu, S.S.
Deposit date:2023-08-10
Release date:2023-11-22
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Engineered antigen-binding fragments for enhanced crystallization of antibody:antigen complexes.
Protein Sci., 33, 2024
7T8R
DownloadVisualize
BU of 7t8r by Molmil
Co-crystal structure of SARS-CoV-2 Mpro C145A with substrate peptide 7/8
Descriptor: 1,2-ETHANEDIOL, 3C-like proteinase, GLYCEROL, ...
Authors:Shaqra, A.M, Schiffer, C.A.
Deposit date:2021-12-16
Release date:2022-06-22
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Defining the substrate envelope of SARS-CoV-2 main protease to predict and avoid drug resistance.
Nat Commun, 13, 2022
5W5O
DownloadVisualize
BU of 5w5o by Molmil
Identification of potent and selective RIPK2 inhibitors for the treatment of inflammatory diseases.
Descriptor: 4-{6-(tert-butylsulfonyl)-7-[2-(4-methylpiperazin-1-yl)ethoxy]imidazo[1,2-a]pyridin-3-yl}-6-chloropyridin-2-amine, Receptor-interacting serine/threonine-protein kinase 2
Authors:Kreusch, A, Spraggon, G.
Deposit date:2017-06-15
Release date:2017-10-25
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:Identification of Potent and Selective RIPK2 Inhibitors for the Treatment of Inflammatory Diseases.
ACS Med Chem Lett, 8, 2017
8BL0
DownloadVisualize
BU of 8bl0 by Molmil
Human Sirt6 in complex with the inhibitor S6023 and ADP-ribose
Descriptor: 3-[4-[[5-(2-fluorophenyl)thiophen-2-yl]methyl]piperazin-1-yl]sulfonylbenzenesulfonamide, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:You, W, Steegborn, C.
Deposit date:2022-11-09
Release date:2023-11-22
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Development of novel Sirtuin 6 inhibitors and activators based on a protein crystallography-based fragment screen
To Be Published
9FF7
DownloadVisualize
BU of 9ff7 by Molmil
Structure of the BMOE-crosslinked transcription termination factor Rho in the presence of ppGpp; S84C/M405C double mutant
Descriptor: 1,1'-ethane-1,2-diylbis(1H-pyrrole-2,5-dione), MAGNESIUM ION, Transcription termination factor Rho
Authors:Said, N, Hilal, T, Wahl, M.C.
Deposit date:2024-05-22
Release date:2025-04-09
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Nucleotide-induced hyper-oligomerization inactivates transcription termination factor rho.
Nat Commun, 16, 2025
6PI6
DownloadVisualize
BU of 6pi6 by Molmil
The evolving story of AtzT, a periplasmic binding protein
Descriptor: 4-(ethylamino)-6-[(propan-2-yl)amino]-1,3,5-triazin-2-ol, Atrazine periplasmic binding protein, DIMETHYL SULFOXIDE
Authors:Peat, T.S, Newman, J, Scott, C, Esquirol, L, Dennis, M, Nebl, T.
Deposit date:2019-06-26
Release date:2019-11-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:The evolving story of AtzT, a periplasmic binding protein.
Acta Crystallogr D Struct Biol, 75, 2019
8BL1
DownloadVisualize
BU of 8bl1 by Molmil
Human Sirt6 in complex with the inhibitor S6039 and ADP-ribose
Descriptor: 2-azanyl-5-[4-[[5-(2-fluorophenyl)thiophen-2-yl]methyl]piperazin-1-yl]sulfonyl-benzenesulfonamide, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:You, W, Steegborn, C.
Deposit date:2022-11-09
Release date:2023-11-22
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Development of novel Sirtuin 6 inhibitors and activators based on a protein crystallography-based fragment screen
To Be Published
5IS5
DownloadVisualize
BU of 5is5 by Molmil
Discovery and Pharmacological Characterization of Novel Quinazoline-based PI3K delta-selective Inhibitors
Descriptor: 5-{4-[3-(4-acetylpiperazine-1-carbonyl)phenyl]quinazolin-6-yl}-2-methoxypyridine-3-carbonitrile, Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform
Authors:Gutmann, S, Rummel, G, Shrestha, B.
Deposit date:2016-03-15
Release date:2016-08-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Discovery and Pharmacological Characterization of Novel Quinazoline-Based PI3K Delta-Selective Inhibitors.
Acs Med.Chem.Lett., 7, 2016
8BQ7
DownloadVisualize
BU of 8bq7 by Molmil
Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH2829
Descriptor: GLYCEROL, N-glycosylase/DNA lyase, NICKEL (II) ION, ...
Authors:Scaletti, E, Stenmark, P.
Deposit date:2022-11-19
Release date:2023-11-29
Last modified:2025-11-12
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Nucleobase catalysts for the enzymatic activation of 8-oxoguanine DNA glycosylase 1
Rsc Chem Biol, 2025
7A50
DownloadVisualize
BU of 7a50 by Molmil
Crystal structure of the APH coiled-coil in complex with nanobody Nb26
Descriptor: 1,2-ETHANEDIOL, Coiled-coil APH, Nanobody Nb26
Authors:Hadzi, S.
Deposit date:2020-08-20
Release date:2021-05-05
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.999 Å)
Cite:A nanobody toolbox targeting dimeric coiled-coil modules for functionalization of designed protein origami structures.
Proc.Natl.Acad.Sci.USA, 118, 2021
6LWG
DownloadVisualize
BU of 6lwg by Molmil
Crystal structure of human NEIL1(P2G, E3Q, R242) bound to duplex DNA containing guanidinohydantoin (Gh)
Descriptor: DNA (5'-D(*CP*GP*TP*CP*CP*AP*(DGH)P*GP*TP*CP*TP*AP*C)-3'), DNA (5'-D(*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*G)-3'), Endonuclease 8-like 1, ...
Authors:Liu, M.H, Zhang, J, Zhu, C.X, Zhang, X.X, Gao, Y.Q, Yi, C.Q.
Deposit date:2020-02-07
Release date:2021-06-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:DNA repair glycosylase hNEIL1 triages damaged bases via competing interaction modes.
Nat Commun, 12, 2021

245663

건을2025-12-03부터공개중

PDB statisticsPDBj update infoContact PDBjnumon