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PDB: 51 results

2YSR
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BU of 2ysr by Molmil
Solution structure of the DEP domain from human DEP domain-containing protein 1
Descriptor: DEP domain-containing protein 1
Authors:Zhang, H.P, Hayahsi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-03
Release date:2007-10-09
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the DEP domain from human DEP domain-containing protein 1
To be Published
6VSK
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BU of 6vsk by Molmil
Crystal structure of the P-Rex1 DEP1 domain
Descriptor: Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 1 protein
Authors:Tesmer, J, Ravala, S.K.
Deposit date:2020-02-11
Release date:2020-07-22
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.12 Å)
Cite:The first DEP domain of the RhoGEF P-Rex1 autoinhibits activity and contributes to membrane binding.
J.Biol.Chem., 295, 2020
1FSH
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BU of 1fsh by Molmil
STRUCTURAL BASIS OF THE RECOGNITION OF THE DISHEVELLED DEP DOMAIN IN THE WNT SIGNALING PATHWAY
Descriptor: DISHEVELLED-1
Authors:Wong, H.C, Zheng, J.
Deposit date:2000-09-08
Release date:2001-03-08
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structural basis of the recognition of the dishevelled DEP domain in the Wnt signaling pathway.
Nat.Struct.Biol., 7, 2000
1W4M
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BU of 1w4m by Molmil
Structure of the human pleckstrin DEP domain by multidimensional NMR
Descriptor: PLECKSTRIN
Authors:Civera, C, Simon, B, Stier, G, Sattler, M, Macias, M.J.
Deposit date:2004-07-26
Release date:2004-12-15
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure and Dynamics of the Human Pleckstrin Dep Domain: Distinct Molecular Features of a Novel Dep Domain Subfamily
Proteins: Struct.,Funct., Genet., 58, 2005
5LNP
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BU of 5lnp by Molmil
Domain-swapped dimer of human Dishevelled2 DEP domain: monoclinic crystal form crystallised from monomeric fraction
Descriptor: SULFATE ION, Segment polarity protein dishevelled homolog DVL-2
Authors:Renko, M, Gammons, M.V, Bienz, M.
Deposit date:2016-08-05
Release date:2016-10-12
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Wnt Signalosome Assembly by DEP Domain Swapping of Dishevelled.
Mol.Cell, 64, 2016
2CSO
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BU of 2cso by Molmil
Solution structure of the DEP domain of human pleckstrin
Descriptor: Pleckstrin
Authors:Inoue, K, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-22
Release date:2005-11-22
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the DEP domain of human pleckstrin
to be published
1UHW
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BU of 1uhw by Molmil
Solution structure of the DEP domain of mouse pleckstrin
Descriptor: Pleckstrin
Authors:Inoue, K, Yoshida, M, Hatta, R, Hayashi, F, Shirouzu, M, Terada, T, Kigawa, T, Inoue, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Hirota, H, Tanaka, A, Osanai, T, Matsuo, Y, Arakawa, T, Carninci, P, Kawai, J, Hayashizaki, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-07-11
Release date:2004-01-11
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of the DEP domain of mouse pleckstrin
To be Published
1V3F
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BU of 1v3f by Molmil
Solution structure of the DEP domain of mouse pleckstrin2
Descriptor: Pleckstrin 2
Authors:Inoue, K, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-10-31
Release date:2004-04-30
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of the DEP domain of mouse pleckstrin2
To be Published
5SUY
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BU of 5suy by Molmil
Domain-swapped dimer of human Dishevelled2 DEP domain: monoclinic crystal form crystallised from dimeric fraction
Descriptor: SULFATE ION, Segment polarity protein dishevelled homolog DVL-2
Authors:Renko, M, Gammons, M.V, Bienz, M.
Deposit date:2016-08-04
Release date:2016-10-12
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Wnt Signalosome Assembly by DEP Domain Swapping of Dishevelled.
Mol.Cell, 64, 2016
5SUZ
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BU of 5suz by Molmil
Domain-swapped dimer of human Dishevelled2 DEP domain: C-centered monoclinic crystal form crystallised from monomeric fraction
Descriptor: Segment polarity protein dishevelled homolog DVL-2
Authors:Renko, M, Gammons, M.V, Bienz, M.
Deposit date:2016-08-04
Release date:2016-10-12
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Wnt Signalosome Assembly by DEP Domain Swapping of Dishevelled.
Mol.Cell, 64, 2016
7DKL
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BU of 7dkl by Molmil
Crystal structure of the tandem DEP domains of DEPTOR
Descriptor: DEP domain-containing mTOR-interacting protein
Authors:Weng, Z.F, Shen, X.X, Liu, Y.F.
Deposit date:2020-11-24
Release date:2021-12-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural Basis of DEPTOR to Recognize Phosphatidic Acid Using its Tandem DEP Domains.
J.Mol.Biol., 433, 2021
7PED
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BU of 7ped by Molmil
DEPTOR DEP domain tandem (DEPt)
Descriptor: DEP domain-containing mTOR-interacting protein
Authors:Waelchli, M, Jakob, R, Maier, T.
Deposit date:2021-08-09
Release date:2021-09-08
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Regulation of human mTOR complexes by DEPTOR.
Elife, 10, 2021
3ML6
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BU of 3ml6 by Molmil
a complex between Dishevelled2 and clathrin adaptor AP-2
Descriptor: Chimeric complex between protein Dishevelled2 homolog dvl-2 and clathrin adaptor AP-2 complex subunit mu
Authors:Yu, A, Xing, Y, Harrison, S.C, Kirchhausen, T.L.
Deposit date:2010-04-16
Release date:2010-08-11
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural analysis of the interaction between Dishevelled2 and clathrin AP-2 adaptor, a critical step in noncanonical Wnt signaling.
Structure, 18, 2010
8FW5
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BU of 8fw5 by Molmil
Chimeric HsGATOR1-SpGtr-SpLam complex
Descriptor: ALUMINUM FLUORIDE, GATOR complex protein DEPDC5, GATOR complex protein NPRL2, ...
Authors:Tettoni, S.D, Egri, S.B, Doxsey, D.D, Ouch, C, Chang, J, Song, K, Xu, C, Shen, K.
Deposit date:2023-01-20
Release date:2023-07-26
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (3.08 Å)
Cite:Structure of the Schizosaccharomyces pombe Gtr-Lam complex reveals evolutionary divergence of mTORC1-dependent amino acid sensing.
Structure, 31, 2023
8TUA
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BU of 8tua by Molmil
Full-length P-Rex1 in complex with inositol 1,3,4,5-tetrakisphosphate (IP4)
Descriptor: INOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE, Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 1 protein
Authors:Cash, J.N, Tesmer, J.J.G.
Deposit date:2023-08-15
Release date:2024-04-10
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Full-length P-Rex1 in complex with inositol 1,3,4,5-tetrakisphosphate (IP4)
Elife, 2024
6CET
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BU of 6cet by Molmil
Cryo-EM structure of GATOR1
Descriptor: GATOR complex protein DEPDC5, GATOR complex protein NPRL2, GATOR complex protein NPRL3
Authors:Shen, K, Huang, R.K, Brignole, E.J, Yu, Z, Sabatini, D.M.
Deposit date:2018-02-12
Release date:2018-03-28
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Architecture of the human GATOR1 and GATOR1-Rag GTPases complexes.
Nature, 556, 2018
6CES
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BU of 6ces by Molmil
Cryo-EM structure of GATOR1-RAG
Descriptor: GATOR complex protein DEPDC5, GATOR complex protein NPRL2, GATOR complex protein NPRL3, ...
Authors:Shen, K, Huang, R.K, Brignole, E.J, Yu, Z, Sabatini, D.M.
Deposit date:2018-02-12
Release date:2018-03-28
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Architecture of the human GATOR1 and GATOR1-Rag GTPases complexes.
Nature, 556, 2018
7RX9
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BU of 7rx9 by Molmil
Structure of autoinhibited P-Rex1
Descriptor: Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 1 protein, Endolysin chimera, SULFATE ION
Authors:Ellisdon, A.M, Chang, Y.
Deposit date:2021-08-22
Release date:2022-08-10
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.22 Å)
Cite:Structure of the metastatic factor P-Rex1 reveals a two-layered autoinhibitory mechanism.
Nat.Struct.Mol.Biol., 29, 2022
7T3A
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BU of 7t3a by Molmil
GATOR1-RAG-RAGULATOR - Inhibitory Complex
Descriptor: GATOR complex protein DEPDC5, GATOR complex protein NPRL2, GATOR complex protein NPRL3, ...
Authors:Egri, S.B, Shen, K.
Deposit date:2021-12-07
Release date:2022-04-06
Last modified:2022-06-01
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Cryo-EM structures of the human GATOR1-Rag-Ragulator complex reveal a spatial-constraint regulated GAP mechanism.
Mol.Cell, 82, 2022
7T3C
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BU of 7t3c by Molmil
GATOR1-RAG-RAGULATOR - Dual Complex
Descriptor: ALUMINUM FLUORIDE, GATOR complex protein DEPDC5, GATOR complex protein NPRL2, ...
Authors:Egri, S.B, Shen, K.
Deposit date:2021-12-07
Release date:2022-04-06
Last modified:2022-06-01
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Cryo-EM structures of the human GATOR1-Rag-Ragulator complex reveal a spatial-constraint regulated GAP mechanism.
Mol.Cell, 82, 2022
7T3B
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BU of 7t3b by Molmil
GATOR1-RAG-RAGULATOR - GAP Complex
Descriptor: ALUMINUM FLUORIDE, GATOR complex protein DEPDC5, GATOR complex protein NPRL2, ...
Authors:Egri, S.B, Shen, K.
Deposit date:2021-12-07
Release date:2022-04-06
Last modified:2022-06-01
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Cryo-EM structures of the human GATOR1-Rag-Ragulator complex reveal a spatial-constraint regulated GAP mechanism.
Mol.Cell, 82, 2022
7SYF
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BU of 7syf by Molmil
Reconstruction of full-length Prex-1 (PtdIns(3,4,5)P3-dependent Rac Exchanger 1)
Descriptor: Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 1 protein,Endolysin chimera
Authors:Lupton, C.J, Bayly-Jones, C, Ellisdon, A.M.
Deposit date:2021-11-24
Release date:2022-07-27
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Structure of the metastatic factor P-Rex1 reveals a two-layered autoinhibitory mechanism.
Nat.Struct.Mol.Biol., 29, 2022
8U54
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BU of 8u54 by Molmil
The mTORC1 cholesterol sensor LYCHOS (GPR155)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Integral membrane protein GPR155
Authors:Bayly-Jones, C, Lupton, C.J, Ellisdon, A.M.
Deposit date:2023-09-12
Release date:2024-09-18
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (2.65 Å)
Cite:LYCHOS is a human hybrid of a plant-like PIN transporter and a GPCR.
Nature, 2024
8U5V
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BU of 8u5v by Molmil
The mTORC1 cholesterol sensor LYCHOS (GPR155) - auxin bound, closed state
Descriptor: 1H-INDOL-3-YLACETIC ACID, CHOLESTEROL HEMISUCCINATE, Integral membrane protein GPR155
Authors:Bayly-Jones, C, Lupton, C.J, Ellisdon, A.M.
Deposit date:2023-09-13
Release date:2024-09-18
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (2.77 Å)
Cite:LYCHOS is a human hybrid of a plant-like PIN transporter and a GPCR.
Nature, 2024
8U58
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BU of 8u58 by Molmil
The mTORC1 cholesterol sensor LYCHOS (GPR155) with tryptophan
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Integral membrane protein GPR155
Authors:Bayly-Jones, C, Lupton, C.J, Ellisdon, A.M.
Deposit date:2023-09-12
Release date:2024-09-18
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (2.45 Å)
Cite:LYCHOS is a human hybrid of a plant-like PIN transporter and a GPCR.
Nature, 2024

 

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