PDB: 159 件ウェブページステータス検索Chemie searchBIRD

---

6RT5	The YTH domain of YTHDC1 protein in complex with Gm6AC oligonucleotide 分子名称: RNA (5'-R(*(6MZ)P*C)-3'), SULFATE ION, YTH domain-containing protein 1 著者 Bedi, R, Sledz, P, Caflisch, A. 登録日 2019-05-22 公開日 2019-11-27 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.303 Å) 主引用文献 Flexible Binding of m6A Reader Protein YTHDC1 to Its Preferred RNA Motif. J Chem Theory Comput, 15, 2019
6LR2	SOLUTION STRUCTURE OF THE YTH DOMAIN IN YTH DOMAIN-2 CONTAINING PROTEIN 2 分子名称: YTH domain containing protein 2 (YTHDC2) 著者 Muto, Y, Kobayashi, N, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2020-01-15 公開日 2021-01-20 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 SOLUTION STRUCTURE OF THE YTH DOMAIN IN YTH DOMAIN-CONTAINING PROTEIN 2 TO BE PUBLISHED
4WQN	Crystal structure of N6-methyladenosine RNA reader YTHDF2 分子名称: 1,2-ETHANEDIOL, GLYCEROL, YTH domain-containing family protein 2 著者 Zhu, T, Roundtree, I.A, Wang, P, Wang, X, Wang, L, Sun, C, Tian, Y, Li, J, He, C, Xu, Y. 登録日 2014-10-22 公開日 2014-11-19 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.121 Å) 主引用文献 Crystal structure of the YTH domain of YTHDF2 reveals mechanism for recognition of N6-methyladenosine. Cell Res., 24, 2014
4U8T	Crystal structure of YTH domain of Zygosaccharomyces rouxii MRB1 protein in complex with N6-Methyladenosine RNA 分子名称: RNA (5'-R(*AP*GP*GP*(6MZ)P*CP*AP*U)-3'), ZYRO0G01672p 著者 Luo, S, Tong, L. 登録日 2014-08-04 公開日 2014-09-10 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Molecular basis for the recognition of methylated adenines in RNA by the eukaryotic YTH domain. Proc.Natl.Acad.Sci.USA, 111, 2014
5ZUU	Crystal structure of AtCPSF30 YTH domain in complex with 10mer m6A-modified RNA 分子名称: 30-kDa cleavage and polyadenylation specificity factor 30, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, ... 著者 Wu, B, Nie, H, Li, S, Patel, D.J. 登録日 2018-05-08 公開日 2019-05-15 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 CPSF30-L-mediated recognition of mRNA m6A modification controls alternative polyadenylation of nitrate signaling-related gene transcripts in Arabidopsis. Mol Plant, 2021
7BIK	Crystal structure of YTHDF2 in complex with m6Am 分子名称: (2~{R},3~{S},4~{R},5~{R})-2-(hydroxymethyl)-4-methoxy-5-[6-(methylamino)purin-9-yl]oxolan-3-ol, GLYCEROL, SULFATE ION, ... 著者 Wang, X, Caflisch, A. 登録日 2021-01-12 公開日 2021-11-24 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal structure of YTHDF2 in complex with m6Am To Be Published
5O8M	Crystal structure of the MmI1 YTH domain 分子名称: GLYCEROL, YTH domain-containing protein mmi1 著者 Brettschneider, J, Verdel, A, Kadlec, J. 登録日 2017-06-13 公開日 2018-04-25 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Selective termination of lncRNA transcription promotes heterochromatin silencing and cell differentiation. EMBO J., 36, 2017
6K6U	Crystal structure of the human YTHDC2 YTH domain 分子名称: 3'-5' RNA helicase YTHDC2 著者 Ma, C, Liao, S, Xu, C. 登録日 2019-06-04 公開日 2019-12-25 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.27 Å) 主引用文献 Crystal structure of human YTHDC2 YTH domain. Biochem.Biophys.Res.Commun., 518, 2019
2MTV	Solution Structure of the YTH Domain of YT521-B in complex with N6-Methyladenosine containing RNA 分子名称: RNA_(5'-R(*UP*GP*(6MZ)P*CP*AP*C)-3'), YTH domain-containing protein 1 著者 Theler, D, Dominguez, C, Blatter, M, Boudet, J, Allain, F.H.-T. 登録日 2014-09-01 公開日 2014-11-26 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution structure of the YTH domain in complex with N6-methyladenosine RNA: a reader of methylated RNA. Nucleic Acids Res., 42, 2014
2YUD	Solution structure of the YTH domain in YTH domain-containing protein 1 (Putative splicing factor YT521) 分子名称: YTH domain-containing protein 1 著者 He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Tarada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2007-04-06 公開日 2007-10-09 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Solution structure of the YTH domain in YTH domain-containing protein 1 (Putative splicing factor YT521) To be Published
2YU6	Solution structure of the YTH domain in YTH domain-containing protein 2 分子名称: YTH domain-containing protein 2 著者 Endo, R, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Tarada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2007-04-05 公開日 2007-10-09 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Solution structure of the YTH domain in YTH domain-containing protein 2 To be Published
7A1V	Crystal structure of YTHDF2 in complex with m1A 分子名称: 6-AMINO-1-METHYLPURINE, GLYCEROL, SULFATE ION, ... 著者 Wang, X, Caflisch, A. 登録日 2020-08-14 公開日 2021-08-25 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure of YTHDF2 in complex with m1A To Be Published
6ZOT	Crystal structure of YTHDF3 YTH domain in complex with m6A RNA 分子名称: RNA, YTH domain-containing family protein 3 著者 Bedi, R.K, Caflisch, A. 登録日 2020-07-07 公開日 2020-10-28 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural and Dynamic Insights into Redundant Function of YTHDF Proteins. J.Chem.Inf.Model., 60, 2020
5H8A	Mmi1 YTH domain 分子名称: YTH domain-containing protein mmi1 著者 Chatterjee, D, Goldgur, Y, Shuman, S. 登録日 2015-12-23 公開日 2016-01-13 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.751 Å) 主引用文献 Transcription of lncRNA prt, clustered prt RNA sites for Mmi1 binding, and RNA polymerase II CTD phospho-sites govern the repression of pho1 gene expression under phosphate-replete conditions in fission yeast. Rna, 22, 2016
5HFZ	Mmi1 YTH domain 分子名称: YTH domain-containing protein mmi1 著者 Chatterjee, D, Goldgur, Y, Shuman, S. 登録日 2016-01-07 公開日 2016-02-10 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.96 Å) 主引用文献 Transcription of lncRNA prt, clustered prt RNA sites for Mmi1 binding, and RNA polymerase II CTD phospho-sites govern the repression of pho1 gene expression under phosphate-replete conditions in fission yeast. Rna, 22, 2016
7L4X	YTH Domain of Human YTHDC1 with dsDNA Comprising Single N6mA joined by two six-bp DNA duplexes in P3221 Crystal 分子名称: 1,2-ETHANEDIOL, YTH domain-containing protein 1, ssDNA w/N6A 著者 Horton, J.R, Cheng, X. 登録日 2020-12-21 公開日 2021-11-03 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.79 Å) 主引用文献 Human MettL3-MettL14 RNA adenine methyltransferase complex is active on double-stranded DNA containing lesions. Nucleic Acids Res., 49, 2021
7L4Y	YTH Domain of Human YTHDC1 with dsDNA Comprising Single N6mA joined by Two Six-bp DNA Duplexes in P212121 Crystal 分子名称: 1,2-ETHANEDIOL, YTH domain-containing protein 1, ssDNA 13mer 著者 Horton, J.R, Cheng, X. 登録日 2020-12-21 公開日 2021-11-03 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.79 Å) 主引用文献 Human MettL3-MettL14 RNA adenine methyltransferase complex is active on double-stranded DNA containing lesions. Nucleic Acids Res., 49, 2021
8BS6	Crystal structure of YTHDF3 disulfide mutant (closed conformation) 分子名称: YTH domain-containing family protein 3 著者 Bedi, R.K, Li, Y, Caflisch, A. 登録日 2022-11-24 公開日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 Crystal structure of YTHDF3 disulfide mutant (closed conformation) To Be Published
8BS5	Crystal structure of YTHDF3 YTH domain open conformation 分子名称: DI(HYDROXYETHYL)ETHER, L(+)-TARTARIC ACID, YTH domain-containing family protein 3 著者 Bedi, R.K, Caflisch, A. 登録日 2022-11-24 公開日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.49 Å) 主引用文献 Crystal structure of YTHDF3 YTH domain open conformation To Be Published
8BS4	Crystal structure of YTHDF1 YTH domain dimer 分子名称: ACETATE ION, GLYCEROL, YTH domain-containing family protein 1 著者 Bedi, R.K, Caflisch, A. 登録日 2022-11-24 公開日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal structure of YTHDF1 YTH domain dimer To Be Published
7NG2	Crystal structure of Toxoplasma CPSF4-YTH domain in apo form 分子名称: ISOPROPYL ALCOHOL, Zinc finger (CCCH type) motif-containing protein 著者 Swale, C, Bowler, M.W. 登録日 2021-02-08 公開日 2021-07-21 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.23 Å) 主引用文献 A plant-like mechanism coupling m6A reading to polyadenylation safeguards transcriptome integrity and developmental gene partitioning in Toxoplasma . Elife, 10, 2021
7NJC	Crystal structure of the Toxoplasma CPSF4 YTH-domain in complex with a 7 mer m6A-modified RNA 分子名称: 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL, N-methyladenosine, RNA (5'-R(*(6MZ)P*CP*A)-3'), ... 著者 Swale, C, Bowler, M.W. 登録日 2021-02-16 公開日 2021-07-21 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.38 Å) 主引用文献 A plant-like mechanism coupling m6A reading to polyadenylation safeguards transcriptome integrity and developmental gene partitioning in Toxoplasma . Elife, 10, 2021
7NH2	Crystal structure of Toxoplasma CPSF4-YTH domain bound to m6A 分子名称: TETRAETHYLENE GLYCOL, Zinc finger (CCCH type) motif-containing protein, ~{N},9-dimethylpurin-6-amine 著者 Swale, C, Bowler, M.W. 登録日 2021-02-09 公開日 2021-07-21 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.35 Å) 主引用文献 A plant-like mechanism coupling m6A reading to polyadenylation safeguards transcriptome integrity and developmental gene partitioning in Toxoplasma . Elife, 10, 2021
6FPP	Structure of S. pombe Mmi1 分子名称: GLYCEROL, MAGNESIUM ION, YTH domain-containing protein mmi1 著者 Stowell, J.A.W, Hill, C.H, Yu, M, Wagstaff, J.L, McLaughlin, S.H, Freund, S.M.V, Passmore, L.A. 登録日 2018-02-11 公開日 2018-05-09 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.93 Å) 主引用文献 A low-complexity region in the YTH domain protein Mmi1 enhances RNA binding. J. Biol. Chem., 293, 2018
6FPQ	Structure of S. pombe Mmi1 in complex with 7-mer RNA 分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, RNA (5'-R(*UP*UP*AP*AP*AP*CP*C)-3'), YTH domain-containing protein mmi1 著者 Stowell, J.A.W, Hill, C.H, Yu, M, Wagstaff, J.L, McLaughlin, S.H, Freund, S.M.V, Passmore, L.A. 登録日 2018-02-11 公開日 2018-05-09 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.42 Å) 主引用文献 A low-complexity region in the YTH domain protein Mmi1 enhances RNA binding. J. Biol. Chem., 293, 2018

 

1234567>