PDB: 224004 件ウェブページステータス検索Chemie searchBIRD

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6PPB	Kaposi's sarcoma-associated herpesvirus (KSHV), C5 portal vertex structure 分子名称: Capsid vertex component 1, Capsid vertex component 2, Large tegument protein deneddylase, ... 著者 Gong, D, Dai, X, Jih, J, Liu, Y.T, Bi, G.Q, Sun, R, Zhou, Z.H. 登録日 2019-07-06 公開日 2019-09-11 最終更新日 2019-11-27 実験手法 ELECTRON MICROSCOPY (4.3 Å) 主引用文献 DNA-Packing Portal and Capsid-Associated Tegument Complexes in the Tumor Herpesvirus KSHV. Cell, 178, 2019
8EV6	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs 分子名称: (2S)-N-[(1R,2S,3S,4R,5S)-4-[(2R,3R,4S,5S,6R)-6-(aminomethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-5-azanyl-2-[(2S,3R,4S,5S ,6R)-4-azanyl-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-cyclohexyl]-4-azanyl-2-oxidanyl-butanamide, 16S Ribosomal RNA, 23S Ribosomal RNA, ... 著者 Seely, S.M, Gagnon, M.G. 登録日 2022-10-19 公開日 2023-08-09 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.946 Å) 主引用文献 Molecular basis of the pleiotropic effects by the antibiotic amikacin on the ribosome. Nat Commun, 14, 2023
8EV7	Crystal structure of the Thermus thermophilus 70S ribosome in complex with kanamycin, mRNA, and A-, P-, and E-site tRNAs 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Seely, S.M, Gagnon, M.G. 登録日 2022-10-19 公開日 2023-08-09 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.89 Å) 主引用文献 Molecular basis of the pleiotropic effects by the antibiotic amikacin on the ribosome. Nat Commun, 14, 2023
8PNC	Transcription factor BARHL2 bound to TAAGT DNA sequence 分子名称: BarH-like 2 homeobox protein, DNA 著者 Morgunova, E, Popov, A, Yin, Y, Taipale, J. 登録日 2023-06-30 公開日 2024-07-10 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Transcription factor BARHL2 bound to different DNA sequences To Be Published
6PPH	Kaposi's sarcoma-associated herpesvirus (KSHV), C1 penton vertex register, CATC-binding structure 分子名称: Capsid vertex component 1, Capsid vertex component 2, Large tegument protein deneddylase, ... 著者 Gong, D, Dai, X, Jih, J, Liu, Y.T, Bi, G.Q, Sun, R, Zhou, Z.H. 登録日 2019-07-06 公開日 2019-09-11 最終更新日 2019-11-27 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 DNA-Packing Portal and Capsid-Associated Tegument Complexes in the Tumor Herpesvirus KSHV. Cell, 178, 2019
6PPI	Kaposi's sarcoma-associated herpesvirus (KSHV), C12 portal dodecamer structure 分子名称: Portal protein 著者 Gong, D, Dai, X, Jih, J, Liu, Y.T, Bi, G.Q, Sun, R, Zhou, Z.H. 登録日 2019-07-07 公開日 2019-09-11 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (4.7 Å) 主引用文献 DNA-Packing Portal and Capsid-Associated Tegument Complexes in the Tumor Herpesvirus KSHV. Cell, 178, 2019
6PPD	Kaposi's sarcoma-associated herpesvirus (KSHV), C1 penton vertex register, CATC-absent structure 分子名称: Major capsid protein, Small capsomere-interacting protein, Triplex capsid protein 1, ... 著者 Gong, D, Dai, X, Jih, J, Liu, Y.T, Bi, G.Q, Sun, R, Zhou, Z.H. 登録日 2019-07-06 公開日 2019-09-11 最終更新日 2019-11-27 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 DNA-Packing Portal and Capsid-Associated Tegument Complexes in the Tumor Herpesvirus KSHV. Cell, 178, 2019
6P7N	Cryo-EM structure of LbCas12a-crRNA: AcrVA4 (2:2 complex) 分子名称: Cas12a, MAGNESIUM ION, anti-CRISPR VA4, ... 著者 Knott, G.J, Liu, J.J, Doudna, J.A. 登録日 2019-06-06 公開日 2019-08-21 最終更新日 2023-08-16 実験手法 ELECTRON MICROSCOPY (4.9 Å) 主引用文献 Structural basis for AcrVA4 inhibition of specific CRISPR-Cas12a. Elife, 8, 2019
6Q0X	The cryo-EM structure of the SNX-BAR Mvp1 tetramer 分子名称: Sorting nexin MVP1 著者 Sun, D, Ford, M.G.J, Zhang, P. 登録日 2019-08-02 公開日 2020-04-01 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 The cryo-EM structure of the SNX-BAR Mvp1 tetramer. Nat Commun, 11, 2020
8GKQ	Crystal Structure Analysis of Aspergillus fumigatus alkaline protease 分子名称: 1,2-ETHANEDIOL, Alkaline protease 1, CALCIUM ION, ... 著者 Fernandez, D, Diec, D.D.L, Guo, W, Russi, S. 登録日 2023-03-20 公開日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Targeting Aspergillus allergen oryzin with a chemical probe at atomic precision. Sci Rep, 13, 2023
3X1S	Crystal structure of the nucleosome core particle 分子名称: CHLORIDE ION, DNA (146-MER), Histone H2A type 1-B/E, ... 著者 Sivaraman, P, Kumarevel, T.S. 登録日 2014-11-27 公開日 2015-09-23 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.805 Å) 主引用文献 Structural and functional analyses of nucleosome complexes with mouse histone variants TH2a and TH2b, involved in reprogramming Biochem.Biophys.Res.Commun., 464, 2015
3V5O	Structural and Mechanistic Studies of Catalysis and Sulfa Drug Resistance in Dihydropteroate Synthase 分子名称: Dihydropteroate synthase, SULFATE ION 著者 Yun, M, Wu, Y, Li, Z, Zhao, Y, Waddell, M.B, Ferreira, A.M, Lee, R.E, Bashford, D, White, S.W. 登録日 2011-12-16 公開日 2012-03-14 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Catalysis and sulfa drug resistance in dihydropteroate synthase. Science, 335, 2012
3URP	Re-refinement of PDB entry 5RNT - ribonuclease T1 with guanosine-3',5'-diphosphate and phosphate ion bound 分子名称: GUANOSINE-3',5'-DIPHOSPHATE, Guanyl-specific ribonuclease T1, PHOSPHATE ION, ... 著者 Smart, O.S, Womack, T.O, Flensburg, C, Keller, P, Sharff, A, Paciorek, W, Vonrhein, C, Bricogne, G. 登録日 2011-11-22 公開日 2012-03-28 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (3.19 Å) 主引用文献 Exploiting structure similarity in refinement: automated NCS and target-structure restraints in BUSTER. Acta Crystallogr.,Sect.D, 68, 2012
3USF	Crystal structure of DAVA-4 分子名称: (4S)-4,5-DIAMINOPENTANOIC ACID, (5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE, Glutamate-1-semialdehyde 2,1-aminomutase 著者 Stetefeld, J. 登録日 2011-11-23 公開日 2012-12-05 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.463 Å) 主引用文献 Crystal structure of DAVA-4 To be Published
3V45	Crystal Structure of de novo designed serine hydrolase OSH55, Northeast Structural Genomics Consortium Target OR130 分子名称: CHLORIDE ION, SODIUM ION, Serine hydrolase OSH55 著者 Kuzin, A, Su, M, Seetharaman, J, Maglaqui, M, Xiao, R, Kohan, E, Rajagopalan, S, Everett, J.K, Nair, R, Acton, T.B, Rost, B, Baker, D, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG) 登録日 2011-12-14 公開日 2012-01-04 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Design of activated serine-containing catalytic triads with atomic-level accuracy. Nat.Chem.Biol., 10, 2014
3V2R	COMPcc in complex with fatty acids 分子名称: Cartilage Oligomerization matrix protein (coiled-coil domain), OLEIC ACID 著者 Stetefeld, J. 登録日 2011-12-12 公開日 2013-01-16 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.75 Å) 主引用文献 COMPcc in complex with fatty acids To be Published
3V53	Crystal structure of human RBM25 分子名称: RNA-binding protein 25 著者 Gong, D.S. 登録日 2011-12-16 公開日 2012-12-12 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Crystal structure and functional characterization of the human RBM25 PWI domain and its flanking basic region Biochem.J., 450, 2013
3V72	Crystal Structure of Rat DNA polymerase beta Mutator E295K: Enzyme-dsDNA 分子名称: CHLORIDE ION, DNA 5'-D(P*AP*AP*AP*CP*TP*CP*AP*CP*AP*T)-3', DNA 5'-D(P*AP*TP*GP*TP*GP*AP*GP*T)-3', ... 著者 Gridley, C.L, Jaeger, J. 登録日 2011-12-20 公開日 2012-07-04 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.49 Å) 主引用文献 Unfavorable Electrostatic and Steric Interactions in DNA Polymerase beta E295K Mutant Interfere with the Enzyme s Pathway J.Am.Chem.Soc., 134, 2012
3ULC	Crystal structure of the pleckstrin homology domain of Saccharomyces cerevisiae Avo1, a TORC2 subunit, in the P3121 crystal form 分子名称: Target of rapamycin complex 2 subunit AVO1 著者 Pan, D, Matsuura, Y. 登録日 2011-11-10 公開日 2012-04-11 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structures of the pleckstrin homology domain of Saccharomyces cerevisiae Avo1 and its human orthologue Sin1, an essential subunit of TOR complex 2 Acta Crystallogr.,Sect.F, 68, 2012
3UV0	Crystal structure of the drosophila MU2 FHA domain 分子名称: Mutator 2, isoform B 著者 Luo, S, Ye, K. 登録日 2011-11-29 公開日 2012-01-25 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Dimerization, but not phosphothreonine binding, is conserved between the forkhead-associated domains of Drosophila MU2 and human MDC1 Febs Lett., 586, 2012
3UOW	Crystal Structure of PF10_0123, a GMP Synthetase from Plasmodium Falciparum 分子名称: CALCIUM ION, GMP synthetase, XANTHOSINE-5'-MONOPHOSPHATE 著者 Wernimont, A.K, Dong, A, Hills, T, Amani, M, Perieteanu, A, Lin, Y.H, Loppnau, P, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Weigelt, J, Hui, R, Structural Genomics Consortium (SGC) 登録日 2011-11-17 公開日 2011-12-07 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.72 Å) 主引用文献 Crystal Structure of PF10_0123, a GMP Synthetase from Plasmodium Falciparum TO BE PUBLISHED
3V2N	COMPcc in complex with fatty acids 分子名称: Cartilage Oligomerization matrix protein (coiled-coil domain), MYRISTIC ACID 著者 Stetefeld, J. 登録日 2011-12-12 公開日 2013-01-16 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 The pentameric channel of COMPcc in complex with different fatty acids. Plos One, 7, 2012
3V2Q	COMPcc in complex with fatty acids 分子名称: Cartilage Oligomerization matrix protein (coiled-coil domain), PALMITIC ACID 著者 Stetefeld, J. 登録日 2011-12-12 公開日 2013-01-16 最終更新日 2013-03-20 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 The pentameric channel of COMPcc in complex with different fatty acids. Plos One, 7, 2012
3WEZ	Crystal structure of human beta-galactosidase in complex with NOEV 分子名称: (1S,2S,3S,6R)-4-(hydroxymethyl)-6-(octylamino)cyclohex-4-ene-1,2,3-triol, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Suzuki, H, Ohto, U, Shimizu, T. 登録日 2013-07-16 公開日 2014-04-23 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.11 Å) 主引用文献 Structural basis of pharmacological chaperoning for human beta-galactosidase to be published
3WPF	Crystal structure of mouse TLR9 (unliganded form) 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, SULFATE ION, Toll-like receptor 9 著者 Ohto, U, Shimizu, T. 登録日 2014-01-11 公開日 2015-02-11 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.959 Å) 主引用文献 Structural basis of CpG and inhibitory DNA recognition by Toll-like receptor 9 Nature, 520, 2015

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