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PDB: 12 results

3ULB
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BU of 3ulb by Molmil
Crystal structure of the pleckstrin homology domain of Saccharomyces cerevisiae Avo1, a TORC2 subunit, in the P212121 crystal form
Descriptor: Target of rapamycin complex 2 subunit AVO1
Authors:Pan, D, Matsuura, Y.
Deposit date:2011-11-10
Release date:2012-04-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structures of the pleckstrin homology domain of Saccharomyces cerevisiae Avo1 and its human orthologue Sin1, an essential subunit of TOR complex 2
Acta Crystallogr.,Sect.F, 68, 2012
3VOQ
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Crystal structure of the pleckstrin homology domain of human Sin1, a TORC2 subunit
Descriptor: Target of rapamycin complex 2 subunit MAPKAP1
Authors:Pan, D, Matsuura, Y.
Deposit date:2012-01-31
Release date:2012-04-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of the pleckstrin homology domain of Saccharomyces cerevisiae Avo1 and its human orthologue Sin1, an essential subunit of TOR complex 2
Acta Crystallogr.,Sect.F, 68, 2012
3W15
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Structure of peroxisomal targeting signal 2 (PTS2) of Saccharomyces cerevisiae 3-ketoacyl-CoA thiolase in complex with Pex7p and Pex21p
Descriptor: 3-ketoacyl-CoA thiolase, peroxisomal, Maltose-binding periplasmic protein, ...
Authors:Pan, D, Nakatsu, T, Kato, H.
Deposit date:2012-11-06
Release date:2013-07-03
Last modified:2017-08-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of peroxisomal targeting signal-2 bound to its receptor complex Pex7p-Pex21p
Nat.Struct.Mol.Biol., 20, 2013
3ULC
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BU of 3ulc by Molmil
Crystal structure of the pleckstrin homology domain of Saccharomyces cerevisiae Avo1, a TORC2 subunit, in the P3121 crystal form
Descriptor: Target of rapamycin complex 2 subunit AVO1
Authors:Pan, D, Matsuura, Y.
Deposit date:2011-11-10
Release date:2012-04-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structures of the pleckstrin homology domain of Saccharomyces cerevisiae Avo1 and its human orthologue Sin1, an essential subunit of TOR complex 2
Acta Crystallogr.,Sect.F, 68, 2012
7FC9
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BU of 7fc9 by Molmil
Crystal structure of CmABCB1 in lipidic mesophase revealed by LCP-SFX
Descriptor: ACETATE ION, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Pan, D, Oyama, R, Sato, T, Nakane, T, Mizunuma, R, Matsuoka, K, Joti, Y, Tono, K, Nango, E, Iwata, S, Nakatsu, T, Kato, H.
Deposit date:2021-07-14
Release date:2022-02-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of CmABCB1 multi-drug exporter in lipidic mesophase revealed by LCP-SFX.
Iucrj, 9, 2022
5D9B
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Luciferin-regenerating enzyme solved by SIRAS using XFEL (refined against native data)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Luciferin regenerating enzyme, MAGNESIUM ION
Authors:Yamashita, K, Pan, D, Okuda, T, Murai, T, Kodan, A, Yamaguchi, T, Gomi, K, Kajiyama, N, Kato, H, Ago, H, Yamamoto, M, Nakatsu, T.
Deposit date:2015-08-18
Release date:2015-09-23
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:An isomorphous replacement method for efficient de novo phasing for serial femtosecond crystallography.
Sci Rep, 5, 2015
5D9D
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BU of 5d9d by Molmil
Luciferin-regenerating enzyme solved by SAD using synchrotron radiation at room temperature
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Luciferin regenerating enzyme, MAGNESIUM ION, ...
Authors:Yamashita, K, Pan, D, Okuda, T, Murai, T, Kodan, A, Yamaguchi, T, Gomi, K, Kajiyama, N, Kato, H, Ago, H, Yamamoto, M, Nakatsu, T.
Deposit date:2015-08-18
Release date:2015-09-23
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.701 Å)
Cite:An isomorphous replacement method for efficient de novo phasing for serial femtosecond crystallography.
Sci Rep, 5, 2015
5D9C
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BU of 5d9c by Molmil
Luciferin-regenerating enzyme solved by SIRAS using XFEL (refined against Hg derivative data)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Luciferin regenerating enzyme, MAGNESIUM ION, ...
Authors:Yamashita, K, Pan, D, Okuda, T, Murai, T, Kodan, A, Yamaguchi, T, Gomi, K, Kajiyama, N, Kato, H, Ago, H, Yamamoto, M, Nakatsu, T.
Deposit date:2015-08-18
Release date:2015-09-23
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:An isomorphous replacement method for efficient de novo phasing for serial femtosecond crystallography.
Sci Rep, 5, 2015
5XFE
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BU of 5xfe by Molmil
Luciferin-regenerating enzyme solved by SAD using XFEL (refined against 11,000 patterns)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Luciferin regenerating enzyme, MAGNESIUM ION, ...
Authors:Yamashita, K, Pan, D, Okuda, T, Murai, T, Kodan, A, Yamaguchi, T, Gomi, K, Kajiyama, N, Kato, H, Ago, H, Yamamoto, M, Nakatsu, T.
Deposit date:2017-04-10
Release date:2017-08-30
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Experimental phase determination with selenomethionine or mercury-derivatization in serial femtosecond crystallography
IUCrJ, 4, 2017
7ETT
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BU of 7ett by Molmil
The FK1 domain of FKBP51 in complex with peptide-inhibitor hit QFPFV
Descriptor: Peptidyl-prolyl cis-trans isomerase FKBP5, peptide-inhibitor hit
Authors:Han, J.T, Zhu, Y.C, Pan, D.B, Xue, H.X, Wang, S, Liu, H.X, He, Y.X, Yao, X.J.
Deposit date:2021-05-14
Release date:2022-02-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Discovery of pentapeptide-inhibitor hits targeting FKBP51 by combining computational modeling and X-ray crystallography.
Comput Struct Biotechnol J, 19, 2021
7ETV
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BU of 7etv by Molmil
The FK1 domain of FKBP51 in complex with peptide-inhibitor hit DFPFV
Descriptor: Peptidyl-prolyl cis-trans isomerase FKBP5, peptide-inhibitor hit
Authors:Han, J.T, Zhu, Y.C, Pan, D.B, Xue, H.X, Wang, S, Liu, H.X, He, Y.X, Yao, X.J.
Deposit date:2021-05-14
Release date:2022-02-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.31 Å)
Cite:Discovery of pentapeptide-inhibitor hits targeting FKBP51 by combining computational modeling and X-ray crystallography.
Comput Struct Biotechnol J, 19, 2021
7ETU
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BU of 7etu by Molmil
The FK1 domain of FKBP51 in complex with peptide-inhibitor hit SFPFT
Descriptor: Peptidyl-prolyl cis-trans isomerase FKBP5, peptide-inhibitor hit
Authors:Han, J.T, Zhu, Y.C, Pan, D.B, Xue, H.X, Wang, S, Liu, H.X, He, Y.X, Yao, X.J.
Deposit date:2021-05-14
Release date:2022-02-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Discovery of pentapeptide-inhibitor hits targeting FKBP51 by combining computational modeling and X-ray crystallography.
Comput Struct Biotechnol J, 19, 2021

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